S.ScerTFYeast transcription factor database Aaron Spivak
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ACA1

YER045C

View at SGD ↗

Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family, may regulate transcription of genes involved in utilization of non-optimal carbon sources

01 / RECOMMENDED MATRIX

Best-performing DNA-binding model.

RecommendedSource: Foat et. al.
Fisher’s P-value0.001487
Information content17.92
Max PWM score18.04
Recommended cutoff11.55
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.92 0.35 0.17 0.97 0.01 0.01 0.21 0.36 0.46 0.01 0.02 0.01 0.87 0.01 0.06 0.39 0.47 
C | 0.01 0.62 0.22 0.01 0.01 0.01 0.13 0.01 0.13 0.19 0.44 0.95 0.01 0.97 0.54 0.01 0.04 
G | 0.06 0.02 0.16 0.01 0.96 0.02 0.65 0.56 0.04 0.33 0.09 0.01 0.12 0.01 0.36 0.59 0.35 
T | 0.01 0.02 0.45 0.01 0.02 0.96 0.01 0.07 0.37 0.47 0.46 0.03 0.01 0.01 0.04 0.02 0.14
Position count matrix (PCM)
A |  92  35  17  97   1   1  21  36  46   1   2   1  87   1   6  39  47 
C |   1  62  22   1   1   1  13   1  13  19  44  95   1  97  54   1   4 
G |   6   2  16   1  96   2  65  56   4  33   9   1  12   1  36  59  35 
T |   1   2  45   1   2  96   1   7  37  47  46   3   1   1   4   2  14
Position weight matrix (PWM)
A |  1.06  0.09 -0.63  1.11 -3.47 -3.47 -0.42  0.12  0.36 -3.47 -2.77 -3.47  1.00 -3.47 -1.67  0.20  0.38 
C | -2.89  1.24  0.20 -2.89 -2.89 -2.89 -0.33 -2.89 -0.33  0.05  0.89  1.66 -2.89  1.68  1.10 -2.89 -1.50 
G | -1.10 -2.20 -0.12 -2.89  1.67 -2.20  1.28  1.13 -1.50  0.61 -0.69 -2.89 -0.41 -2.89  0.69  1.19  0.66 
T | -3.47 -2.77  0.34 -3.47 -2.77  1.10 -3.47 -1.52  0.15  0.38  0.36 -2.37 -3.47 -3.47 -2.08 -2.77 -0.83
02 / COMPARATIVE BENCHMARKS

Alternative candidate matrices 1

Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.

ACA1Morozov et. al.P = 1View matrix ↘
Sequence logo for ACA1
Fisher’s P-value1
Information content3.882
Max PWM score7.64
Recommended cutoff6.69
Position frequency matrix (PFM)
A | 0.116 0.116 0.116 0.116 0.116 0.256 0.233 0.651 
C | 0.116 0.116 0.116 0.651 0.256 0.372 0.535 0.116 
G | 0.233 0.651 0.651 0.116 0.372 0.116 0.116 0.116 
T | 0.535 0.116 0.116 0.116 0.256 0.256 0.116 0.116
Position count matrix (PCM)
A |  11  11  11  11  11  25  23  65 
C |  11  11  11  65  25  37  53  11 
G |  23  65  65  11  37  11  11  11 
T |  53  11  11  11  25  25  11  11
Position weight matrix (PWM)
A | -1.01 -1.01 -1.01 -1.01 -1.01 -0.22 -0.32  0.71 
C | -0.44 -0.44 -0.44  1.29  0.35  0.73  1.09 -0.44 
G |  0.26  1.29  1.29 -0.44  0.73 -0.44 -0.44 -0.44 
T |  0.51 -1.01 -1.01 -1.01 -0.22 -0.22 -1.01 -1.01
Morozov et. al.
03 / EXPERIMENTAL CONTEXT

Gene-level annotations and interactions.

Genes bound in ChIP-chip experiments 14 genes

YAR064W, YBR012C, YBR013C, YBR061C, YBR254C, YBR255W, YDR332W, YHR164C, YHR191C, YHR192W, YOL072W, YOL073C, YPL078C, YPL172C

Genes affected by TF deletion 110 genes

YCR040W, YGR280C, YIL146C, YKR012C, YNL050C, YGL009C, YCR013C, YKR013W, YMR044W, YFR005C, YHR025W, YIR034C, YLR340W, YLR372W, YOR351C, YPL187W, YHR208W, YML085C, YBR067C, YDR461W, YLR339C, YNL146W, YCL012W, YCL018W, YIL015W, YNL300W, YCL065W, YNR071C, YOR229W, YHR184W, YJL121C, YLR439W, YMR202W, YNL279W, YIL151C, YJR148W, YAL012W, YAL014C, YER001W, YDR502C, YOL086C, YPL280W, YKL209C, YKL178C, YNR035C, YPL092W, YFL052W, YGR038W, YLR343W, YOL111C, YOL143C, YOR221C, YAR075W, YBL032W, YDR344C, YJL158C, YKL177W, YNL312W, YOR239W, YOR243C, YLR040C, YLR420W, YCL066W, YKR086W, YAL018C, YBR240C, YGR137W, YGR109W-A, YHR133C, YJL068C, YJL102W, YKL089W, YKL120W, YLR041W, YLR444C, YOR084W, YPL067C, YPR097W, YCR097W, YFL026W, YOL126C, YBR273C, YGL089C, YFL023W, YBL073W, YGR233C, YJR004C, YKL216W, YMR303C, YNR044W, YNL322C, YPL163C, YLR303W, YOR245C, YOR247W, YEL038W, YML019W, YOR063W, YLR302C, YOR246C, YOR248W, YGL032C, YPL044C, YOR034C, YGR274C, YMR276W, YDL211C, YER073W, YKL197C, YPR176C

Predicted TF–TF partners 4 genes

GCN4, MSN2, MSN4, RTG3

Explore 4 original interaction plots →