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ABF2
YMR072W
Mitochondrial DNA-binding protein involved in mitochondrial DNA replication and recombination, member of HMG1 DNA-binding protein family; activity may be regulated by protein kinase A phosphorylation
01 / RECOMMENDED MATRIX
Best-performing DNA-binding model.
Fisher’s P-valueNo data
Information content9.262
Max PWM score7.58
Recommended cutoff5.68
View and copy the recommended matrices ↘
Position frequency matrix (PFM)
A | 0.09 0.01 0.01 0.97 0.01 0.94 C | 0.09 0.97 0.01 0.01 0.01 0.02 G | 0.02 0.01 0.01 0.01 0.97 0.02 T | 0.80 0.01 0.97 0.01 0.01 0.02
Position count matrix (PCM)
A | 9 1 1 97 1 94 C | 9 97 1 1 1 2 G | 2 1 1 1 97 2 T | 80 1 97 1 1 2
Position weight matrix (PWM)
A | -1.27 -3.47 -3.47 1.11 -3.47 1.08 C | -0.69 1.68 -2.89 -2.89 -2.89 -2.20 G | -2.20 -2.89 -2.89 -2.89 1.68 -2.20 T | 0.92 -3.47 1.11 -3.47 -3.47 -2.77
02 / COMPARATIVE BENCHMARKS
Alternative candidate matrices 0
Historical matrix candidates from the original ScerTF database. Expand a source to inspect its original logo, scores, and matrix values.
No additional matrices in the original archive.
03 / EXPERIMENTAL CONTEXT
Gene-level annotations and interactions.
Genes bound in ChIP-chip experiments 1 genes
No Data
Genes affected by TF deletion 1 genes
No Data
Genes supported by both experiments 1 genes
No Data