name	alias	source	ref	consensus	pvalue	cutoff	ic	max	description	chip	knockout	pairs	PFM
ABF1	YKL112W, SBF1, REB2, OBF1, BAF1	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	TATCACTATATACGA	2.365863e-165	8.21	14.272	13.54	"DNA binding protein with possible chromatin-reorganizing activity involved in transcriptional activation, gene silencing, and DNA replication and repair
"	YAL016W, YAL023C, YAL041W, YAL042W, YAL043C, YAL043C-A, YAL053W, YAL054C, YBL007C, YBL032W, YBL033C, YBL038W, YBL039C, YBL041W, YBL042C, YBL056W, YBL057C, YBL079W, YBL080C, YBR011C, YBR029C, YBR030W, YBR077C, YBR078W, YBR080C, YBR101C, YBR109C, YBR110W, YBR122C, YBR124W, YBR129C, YBR146W, YBR198C, YBR199W, YBR211C, YBR212W, YBR222C, YBR224W, YBR225W, YBR283C, YBR284W, YBR286W, YBR290W, YBR293W, YCL001W, YCL004W, YCL005W, YCL011C, YCL016C, YCL017C, YCL031C, YCL045C, YCR001W, YCR003W, YCR053W, YCR082W, YCR092C, YCR093W, YDL010W, YDL012C, YDL020C, YDL026W, YDL028C, YDL032W, YDL035C, YDL051W, YDL052C, YDL070W, YDL072C, YDL073W, YDL074C, YDL081C, YDL084W, YDL105W, YDL106C, YDL116W, YDL122W, YDL145C, YDL159W, YDL160C, YDL189W, YDL190C, YDL193W, YDL195W, YDL208W, YDL209C, YDL229W, YDR001C, YDR002W, YDR027C, YDR035W, YDR120C, YDR121W, YDR130C, YDR144C, YDR145W, YDR194C, YDR195W, YDR207C, YDR208W, YDR233C, YDR234W, YDR245W, YDR266C, YDR280W, YDR283C, YDR284C, YDR285W, YDR295C, YDR296W, YDR312W, YDR326C, YDR327W, YDR329C, YDR330W, YDR339C, YDR340W, YDR359C, YDR361C, YDR365C, YDR365W-A, YDR365W-B, YDR367W, YDR384C, YDR385W, YDR397C, YDR398W, YDR404C, YDR405W, YDR408C, YDR409W, YDR410C, YDR422C, YDR430C, YDR432W, YDR433W, YDR454C, YDR456W, YDR462W, YDR463W, YDR527W, YDR543C, YEL017C-A, YEL017W, YEL037C, YER017C, YER026C, YER071C, YER072W, YER089C, YER090W, YER111C, YER112W, YER124C, YER125W, YER158C, YER165W, YER166W, YFL017W-A, YFL018C, YFL047W, YFL048C, YFR010W, YGL010W, YGL011C, YGL039W, YGL077C, YGL106W, YGL107C, YGL122C, YGL169W, YGL172W, YGL173C, YGL192W, YGL194C, YGL195W, YGL222C, YGL228W, YGL229C, YGL253W, YGR053C, YGR054W, YGR056W, YGR059W, YGR119C, YGR128C, YGR129W, YGR144W, YGR183C, YGR185C, YGR186W, YGR187C, YGR204W, YGR215W, YGR231C, YGR232W, YGR240C, YGR242W, YGR252W, YGR253C, YGR268C, YGR270W, YGR282C, YHL002W, YHL003C, YHL004W, YHL007C, YHL027W, YHL028W, YHL029C, YHR019C, YHR020W, YHR041C, YHR042W, YHR051W, YHR064C, YHR065C, YHR066W, YHR077C, YHR078W, YHR080C, YHR081W, YHR090C, YHR115C, YHR116W, YHR161C, YHR162W, YHR199C, YHR200W, YIL003W, YIL004C, YIL026C, YIL031W, YIL032C, YIL035C, YIL036W, YIL037C, YIL048W, YIL135C, YIL138C, YIL144W, YIL145C, YIL174W, YIL175W, YIR010W, YIR023W, YJL003W, YJL004C, YJL008C, YJL053W, YJL062W, YJL063C, YJL069C, YJL104W, YJL110C, YJL111W, YJL152W, YJL153C, YJL174W, YJL176C, YJL183W, YJL201W, YJL202C, YJR006W, YJR045C, YJR046W, YJR058C, YJR059W, YJR062C, YJR063W, YJR064W, YJR088C, YJR089W, YJR093C, YJR094W-A, YJR104C, YJR105W, YJR116W, YJR127C, YJR137C, YJR138W, YKL004W, YKL005C, YKL007W, YKL008C, YKL012W, YKL013C, YKL014C, YKL015W, YKL016C, YKL019W, YKL020C, YKL028W, YKL029C, YKL039W, YKL040C, YKL041W, YKL047W, YKL048C, YKL060C, YKL078W, YKL094W, YKL098W, YKL099C, YKL135C, YKL143W, YKL144C, YKL167C, YKL172W, YKL177W, YKL179C, YKL182W, YKL190W, YKL191W, YKL192C, YKL195W, YKL196C, YKR015C, YKR016W, YKR029C, YKR030W, YKR038C, YKR046C, YKR047W, YKR056W, YKR057W, YKR059W, YKR068C, YKR069W, YKR075C, YKR081C, YKR082W, YLL011W, YLL012W, YLL013C, YLL033W, YLL034C, YLL044W, YLL046C, YLR003C, YLR023C, YLR024C, YLR025W, YLR029C, YLR030W, YLR055C, YLR056W, YLR095C, YLR096W, YLR117C, YLR131C, YLR163C, YLR164W, YLR174W, YLR179C, YLR180W, YLR192C, YLR201C, YLR202C, YLR203C, YLR204W, YLR222C, YLR229C, YLR254C, YLR259C, YLR260W, YLR264W, YLR292C, YLR293C, YLR294C, YLR295C, YLR296W, YLR330W, YLR347C, YLR349W, YLR370C, YLR371W, YLR373C, YLR375W, YLR396C, YLR399C, YLR400W, YLR401C, YLR402W, YLR453C, YLR454W, YML012W, YML013C-A, YML081W, YMR005W, YMR033W, YMR060C, YMR061W, YMR066W, YMR078C, YMR079W, YMR092C, YMR093W, YMR125W, YMR129W, YMR197C, YMR198W, YMR200W, YMR216C, YMR217W, YMR235C, YMR236W, YMR260C, YMR280C, YMR281W, YMR296C, YMR297W, YNL004W, YNL005C, YNL036W, YNL037C, YNL044W, YNL057W, YNL059C, YNL063W, YNL064C, YNL083W, YNL084C, YNL085W, YNL111C, YNL112W, YNL113W, YNL114C, YNL115C, YNL116W, YNL117W, YNL118C, YNL119W, YNL121C, YNL138W, YNL139C, YNL140C, YNL149C, YNL183C, YNL189W, YNL207W, YNL209W, YNL212W, YNL213C, YNL243W, YNL244C, YNL250W, YNL251C, YNL255C, YNL258C, YNL267W, YNL287W, YNL306W, YNL307C, YNL312W, YNL313C, YNL321W, YNL322C, YNL337W, YNR020C, YNR021W, YNR035C, YNR037C, YNR038W, YNR046W, YNR052C, YNR053C, YOL026C, YOL034W, YOL036W, YOL068C, YOL076W, YOL077C, YOL116W, YOL133W, YOL135C, YOR020C, YOR027W, YOR045W, YOR056C, YOR057W, YOR086C, YOR098C, YOR099W, YOR116C, YOR117W, YOR145C, YOR147W, YOR157C, YOR158W, YOR167C, YOR168W, YOR170W, YOR205C, YOR206W, YOR207C, YOR208W, YOR213C, YOR224C, YOR225W, YOR231W, YOR261C, YOR262W, YOR309C, YOR310C, YOR322C, YOR343C-A, YOR343C-B, YOR354C, YOR357C, YOR358W, YPL001W, YPL002C, YPL012W, YPL013C, YPL036W, YPL037C, YPL104W, YPL105C, YPL146C, YPL159C, YPL160W, YPL161C, YPL179W, YPL228W, YPL232W, YPL242C, YPR017C, YPR018W, YPR045C, YPR046W, YPR063C, YPR064W, YPR104C, YPR128C, YPR129W, YPR137W, YPR148C, YPR154W, YPR165W, YPR176C, YPR178W, YPR184W, YPR186C, YPR187W, YPR190C, YPR191W, YPR202W, YPR203W	YBR032W, YBR034C, YDR366C, YDR404C, YER178W, YHL044W, YGR282C, YIL116W, YJR080C, YJR020W, YKR077W, YLR220W, YML114C, YMR045C, YMR046W-A, YOL013W-A, YOR259C, YAL007C, YBR158W, YBR160W, YBR191W, YGL009C, YHR143W, YJL119C, YLR027C, YLR058C, YDR301W, YBR035C, YCR013C, YCL054W, YDR034C-A, YDR365W-B, YER177W, YGL204C, YGR279C, YHL045W, YIL147C, YJR017C, YJR082C, YJR051W, YOL014W, YOR194C, YJR002W, YAL036C, YAL008W, YBR155W, YBR159W, YGL012W, YGR122C-A, YHR142W, YHR145C, YHR179W, YJL048C, YJL052W, YJL086C, YLR089C, YLR028C, YPL048W, YBR098W, YDL037C, YDR158W, YDR100W, YDR525W-A, YFL010W-A, YGR065C, YIR034C, YJR149W, YLL060C, YLR374C, YMR103C, YOL104C, YOL106W, YOL138C, YBL023C, YBL027W, YDL188C, YER026C, YGL075C, YGL107C, YIL015C-A, YIL048W, YIL018W, YIL050W, YKL168C, YKL170W, YMR316W, YBR061C, YBR095C, YBR067C, YBR097W, YDR127W, YDR159W, YDR461W, YFL010C, YHR021C, YHR050W, YHR026W, YKL017C, YMR102C, YNL146W, YOL103W-B, YPR019W, YBL058W, YBR254C, YDR309C, YDR340W, YER023W, YER083C, YER057C, YGR211W, YGR243W, YIL015W, YIL051C, YKL142W, YLR157C, YNL338W, YBR012C, YBR012W-B, YCR021C, YDR410C, YDR444W, YGL244W, YHR001W-A, YIL088C, YJR089W, YKR049C, YLR256W, YNL058C, YNR071C, YAL044C, YBR163W, YBR199W, YDL108W, YJL121C, YLR098C, YML006C, YMR228W, YOR385W, YPL059W, YOR391C, YBL091C, YCR018C-A, YCL064C, YDR011W, YDR015C, YDR043C, YDR379W, YDR411C, YHL021C, YIL085C, YIL117C, YIL087C, YIL091C, YJR027W, YJR029W, YKR052C, YNL055C, YOR230W, YJR148W, YAL043C-A, YAR009C, YBR162W-A, YBR164C, YBR166C, YBR200W, YBR232C, YGR161C-D, YGR161W-B, YML007W, YOR010C, YOR078W, YDL039C, YDR168W, YDR171W, YDR537C, YDR476C, YFL018C, YGR038C-B, YGR039W, YHR029C, YIR036C, YJL026W, YLR380W, YLR350W, YPR028W, YBL001C, YBR263W, YBR295W, YCL028W, YDR284C, YGL143C, YGL081W, YHR215W, YIL060W, YJL217W, YLR162W, YBR069C, YBR103W, YCR085W, YDL008W, YDL012C, YDR505C, YDR536W, YGR008C, YHR030C, YJL027C, YLR343W, YLR349W, YMR083W, YBL032W, YBR290W, YCL029C, YDL163W, YDL229W, YER088C, YER033C, YGL144C, YGL082W, YGL084C, YGL116W, YIL053W, YJL186W, YJL158C, YJL222W, YKL179C, YKL150W, YPL087W, YBR046C, YBL103C, YIL162W, YJR032W, YLR259C, YGR109W-B, YKL096W, YIL157C, YOL030W, YBR170C, YBR238C, YGR109W-A, YHR157W, YBL007C, YBR142W, YFL026W, YFL059W, YGR019W, YGR049W, YKL030W, YLL044W, YLR356W, YMR120C, YOL152W, YNL071W, YBL070C, YBL009W, YBL041W, YBL011W, YBR267W, YBR273C, YGR260W, YBR141C, YBR143C, YBR145W, YDR178W, YGR074W, YJL037W, YKL029C, YLR355C, YMR085W, YOL119C, YOR332W, YPR002C-A, YBL036C, YBL069W, YBL040C, YBL010C, YBR266C, YDR321W, YDR354W, YGR259C, YJL196C, YKL183W, YNR044W, YNL322C, YPL129W, YER091C, YDR094W, YER138C, YGL258W, YKR065C, YNL073W, YOL041C, YOL072W, YKL114C, YNL054W, YAR033W, YAL060W, YBR215W, YBR247C, YDR210W-D, YDR214W, YGL001C, YBR055C, YBL107W-A, YBR057C, YDR029W, YER138W-A, YGL226C-A, YJR105W, YJR043C, YJR077C, YKR096W, YNL072W, YNL104C, YPL257W-B, YBR210W, YBR242W, YBR212W, YBR244W, YBR246W, YBR216C, YBR248C, YEL066W, YFR055W, YLR452C, YOR056C, YPL044C, YDL023C, YDL054C, YDR156W, YHR105W, YHR046C, YKL005C, YKL035W, YKL008C, YLR334C, YMR158C-B, YOL098C, YOR343C-B, YCL005W, YCL040W, YCL042W, YER051W, YGL159W, YGR238C, YDL022W, YCR100C, YDL055C, YDR121W, YDR517W, YFL062W, YFL033C, YHR104W, YHR075C, YHR047C, YHR108W, YIR025W, YJL046W, YLL053C, YLL057C, YMR153W, YOL165C, YER079W, YGR203W, YGR235C, YIL009C-A, YIL041W, YJL200C, YJL174W, YML079W, YML107C, YML051W	BAS1, GCN4, HSF1, MBP1, PDR1, REB1, RPN4, STB1, STB3, SUM1, SWI4, SWI6	"A | 0.231 0.678 0.006 0.019 0.830 0.002 0.054 0.395 0.156 0.417 0.224 0.980 0.002 0.012 0.459 
C | 0.132 0.017 0.012 0.975 0.004 0.565 0.113 0.159 0.191 0.127 0.267 0.008 0.982 0.004 0.105 
G | 0.119 0.295 0.004 0.004 0.160 0.001 0.059 0.099 0.048 0.270 0.116 0.010 0.008 0.982 0.198 
T | 0.518 0.010 0.978 0.002 0.006 0.432 0.774 0.347 0.605 0.186 0.393 0.002 0.008 0.002 0.238 
"
ABF2	YMR072W	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	TCTAGA		5.68	9.26177	7.58	"Mitochondrial DNA-binding protein involved in mitochondrial DNA replication and recombination, member of HMG1 DNA-binding protein family; activity may be regulated by protein kinase A phosphorylation
"	No Data	No Data	None	"A | 0.090 0.010 0.010 0.970 0.010 0.940 
C | 0.090 0.970 0.010 0.010 0.010 0.020 
G | 0.020 0.010 0.010 0.010 0.970 0.020 
T | 0.800 0.010 0.970 0.010 0.010 0.020 
"
ACA1	YER045C	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	ACTAGTGGATTCACCGA	0.001486547	11.55	17.9193	18.04	"Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family, may regulate transcription of genes involved in utilization of non-optimal carbon sources
"	YAR064W, YBR012C, YBR013C, YBR061C, YBR254C, YBR255W, YDR332W, YHR164C, YHR191C, YHR192W, YOL072W, YOL073C, YPL078C, YPL172C	YCR040W, YGR280C, YIL146C, YKR012C, YNL050C, YGL009C, YCR013C, YKR013W, YMR044W, YFR005C, YHR025W, YIR034C, YLR340W, YLR372W, YOR351C, YPL187W, YHR208W, YML085C, YBR067C, YDR461W, YLR339C, YNL146W, YCL012W, YCL018W, YIL015W, YNL300W, YCL065W, YNR071C, YOR229W, YHR184W, YJL121C, YLR439W, YMR202W, YNL279W, YIL151C, YJR148W, YAL012W, YAL014C, YER001W, YDR502C, YOL086C, YPL280W, YKL209C, YKL178C, YNR035C, YPL092W, YFL052W, YGR038W, YLR343W, YOL111C, YOL143C, YOR221C, YAR075W, YBL032W, YDR344C, YJL158C, YKL177W, YNL312W, YOR239W, YOR243C, YLR040C, YLR420W, YCL066W, YKR086W, YAL018C, YBR240C, YGR137W, YGR109W-A, YHR133C, YJL068C, YJL102W, YKL089W, YKL120W, YLR041W, YLR444C, YOR084W, YPL067C, YPR097W, YCR097W, YFL026W, YOL126C, YBR273C, YGL089C, YFL023W, YBL073W, YGR233C, YJR004C, YKL216W, YMR303C, YNR044W, YNL322C, YPL163C, YLR303W, YOR245C, YOR247W, YEL038W, YML019W, YOR063W, YLR302C, YOR246C, YOR248W, YGL032C, YPL044C, YOR034C, YGR274C, YMR276W, YDL211C, YER073W, YKL197C, YPR176C	GCN4, MSN2, MSN4, RTG3	"A | 0.920 0.347 0.170 0.970 0.010 0.010 0.210 0.360 0.460 0.010 0.020 0.010 0.861 0.010 0.060 0.386 0.470 
C | 0.010 0.614 0.220 0.010 0.010 0.010 0.130 0.010 0.130 0.190 0.436 0.950 0.010 0.970 0.540 0.010 0.040 
G | 0.060 0.020 0.160 0.010 0.960 0.020 0.650 0.560 0.040 0.330 0.089 0.010 0.119 0.010 0.360 0.584 0.350 
T | 0.010 0.020 0.450 0.010 0.020 0.960 0.010 0.070 0.370 0.470 0.455 0.030 0.010 0.010 0.040 0.020 0.140 
"
ACE2	YLR131C	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	AACCAGCA	2.042704e-10	6.34	7.20949	8.38	"Transcription factor that activates expression of early G1-specific genes, localizes to daughter cell nuclei after cytokinesis and delays G1 progression in daughters, localization is regulated by phosphorylation; potential Cdc28p substrate
"	YAL040C, YAL062W, YBL023C, YBR057C, YBR157C, YBR158W, YBR159W, YBR162C, YBR162W-A, YBR229C, YBR230C, YDL042C, YDL055C, YDL126C, YDL127W, YDR010C, YDR011W, YDR154C, YDR155C, YDR156W, YDR157W, YDR158W, YDR277C, YDR345C, YEL007W, YER066C-A, YER068W, YER078C, YER079W, YER081W, YER087C-A, YER088C, YER124C, YER125W, YER126C, YER127W, YER177W, YER189W, YER190W, YFL021W, YFL022C, YFL056C, YFL057C, YFR017C, YGL007W, YGL008C, YGL028C, YGL133W, YGL147C, YGL227W, YGL228W, YGL229C, YGR041W, YGR125W, YGR234W, YGR283C, YHL012W, YHL013C, YHL028W, YHL029C, YHR091C, YHR143W, YHR193C, YHR194W, YHR195W, YIL009W, YIR004W, YJL075C, YJL078C, YJL080C, YJL098W, YJL159W, YJL160C, YJR044C, YJR145C, YJR146W, YJR147W, YJR148W, YJR149W, YKL030W, YKL031W, YKL032C, YKL084W, YKL096W-A, YKL097C, YKL142W, YKL146W, YKL148C, YKL150W, YKL151C, YKR040C, YKR042W, YLL019C, YLL020C, YLR207W, YLR255C, YLR256W, YLR256W-A, YLR286C, YLR287C-A, YLR300W, YLR370C, YLR371W, YLR397C, YLR439W, YLR440C, YML003W, YML004C, YML007W, YML008C, YML082W, YML083C, YML100W, YML101C, YML102C-A, YML131W, YMR122C, YMR135W-A, YMR165C, YMR251W-A, YMR261C, YMR262W, YNL078W, YNL079C, YNL098C, YNL154C, YNL241C, YNL327W, YNL328C, YNR018W, YOR138C, YOR140W, YOR315W, YOR344C, YPL018W, YPL019C, YPL024W, YPL025C, YPL056C, YPL230W, YPL251W, YPL253C, YPR105C, YPR106W, YPR115W	YCR040W, YER178W, YMR046W-A, YNL016W, YOL013W-A, YOR225W, YOR257W, YBR158W, YDL131W, YFR032C-A, YGL009C, YHR143W, YKL049C, YLR056W, YMR194W, YNL239W, YPR114W, YBR029C, YBR031W, YGR279C, YKR042W, YML113W, YMR011W, YMR013C, YNL078W, YOR226C, YCR097W-A, YBR220C, YDL061C, YGL012W, YGR155W, YGR096W, YHR143W-A, YHR145C, YJL052W, YLR089C, YMR221C, YOR066W, YBR092C, YFR005C, YHR025W, YIR034C, YJR147W, YLR372W, YNL115C, YNL149C, YOL104C, YOR347C, YOR351C, YPL187W, YBR283C, YER026C, YGL105W, YGR180C, YHR208W, YML056C, YMR312W, YBR091C, YBR067C, YDR461W, YFR006W, YHR021C, YLR339C, YNL146W, YNL116W, YOL109W, YOR316C, YBL026W, YCL012W, YCL018W, YDL191W, YDR338C, YER056C, YGL104C, YGR185C, YIL015W, YLR153C, YLR185W, YML055W, YML086C, YDR012W, YGL179C, YIL088C, YLR286C, YLR287C-A, YNL030W, YNR067C, YOR229W, YOR263C, YOR265W, YLR131C, YDL133C-A, YDR224C, YFR044C, YLR439W, YMR230W, YMR173W, YPR147C, YBR009C, YBR011C, YER152C, YER124C, YER154W, YGR285C, YJR025C, YOR230W, YOR264W, YJR148W, YAL012W, YAL043C-A, YDL075W, YKL081W, YLR034C, YDR502C, YFL018C, YGR041W, YLR380W, YOL144W, YPL195W, YBL062W, YBR265W, YGR254W, YGR192C, YJL159W, YKL209C, YKL178C, YML037C, YPL092W, YCR088W, YFL021W, YHR064C, YLL010C, YLR343W, YMR079W, YMR083W, YNL150W, YOL143C, YOR324C, YPL279C, YOR221C, YNR043W, YBL032W, YIL027C, YKL175W, YKL177W, YMR323W, YER060W, YDR086C, YER131W, YHR010W, YKR093W, YPL256C, YIL114C, YBR209W, YKL062W, YLR040C, YLR042C, YOR023C, YOR393W, YPL066W, YCL066W, YCR024C, YGL214W, YHR005C-A, YKR086W, YML126C, YNL035C, YNL066W, YOR210W, YAL022C, YDL081C, YGL028C, YKL120W, YLR041W, YMR173W-A, YOR020C, YPL063W, YCR097W, YFL026W, YHR072W-A, YLR322W, YLR354C, YLR388W, YMR120C, YOL126C, YGL089C, YGR234W, YBR145W, YDR481C, YFL023W, YFR018C, YGR044C, YJR158W, YMR116C, YNL162W, YPL281C, YGR259C, YJR004C, YKL216W, YMR303C, YNR044W, YNR015W, YCR034W, YDR090C, YDR390C, YER170W, YGL225W, YHL004W, YHR018C, YJR046W, YKR035W-A, YLR303W, YMR006C, YNL103W, YPL262W, YBR249C, YEL038W, YGR172C, YGR176W, YHR141C, YJL079C, YLR048W, YLR116W, YML019W, YLR459W, YOR063W, YPL076W, YER136W, YHL003C, YLR302C, YMR064W, YNL070W, YDL121C, YGL032C, YJL078C, YML020W, YMR243C, YMR215W, YBR118W, YBR090C, YKL037W, YJR139C, YKL008C, YLR021W, YLR366W, YMR099C, YOR034C, YCL009C, YDL182W, YDL184C, YJR009C, YKL161C, YKL164C, YLR180W, YML108W, YNL327W, YPL170W, YJL013C, YLR359W, YMR094W, YOL103W, YML081C-A, YNR050C, YOR182C	None	"A | 0.743 0.731 0.001 0.029 0.548 0.274 0.112 0.601 
C | 0.124 0.032 0.804 0.832 0.361 0.030 0.524 0.339 
G | 0.132 0.199 0.027 0.001 0.017 0.646 0.066 0.017 
T | 0.001 0.038 0.168 0.138 0.074 0.050 0.298 0.043 
"
ADR1	YDR216W	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	ATGCAACCTGTCA	5.9994882e-09	10.8	13.5536	14.38	"Carbon source-responsive zinc-finger transcription factor, required for transcription of the glucose-repressed gene ADH2, of peroxisomal protein genes, and of genes required for ethanol, glycerol, and fatty acid utilization
"	YAL022C, YAR009C, YBL025W, YBR109C, YBR110W, YBR163W, YBR223C, YBR226C, YBR227C, YBR228W, YBR236C, YBR237W, YBR256C, YBR257W, YBR298C, YBR299W, YCL051W, YCL052C, YCL055W, YCL056C, YCR054C, YCR095C, YDL017W, YDL018C, YDL027C, YDL054C, YDL073W, YDL074C, YDL089W, YDL090C, YDL117W, YDL119C, YDL122W, YDL159W, YDL160C, YDL176W, YDL177C, YDL179W, YDL240W, YDR045C, YDR159W, YDR164C, YDR165W, YDR183W, YDR236C, YDR237W, YDR279W, YDR289C, YDR318W, YEL004W, YEL005C, YEL061C, YER057C, YER058W, YER099C, YER100W, YER133W, YFL012W, YFL013C, YFR007W, YFR023W, YFR044C, YFR045W, YGL083W, YGL084C, YGL133W, YGL139W, YGL140C, YGL204C, YGL258W, YGR098C, YGR099W, YGR191W, YGR223C, YGR224W, YHR008C, YHR044C, YHR045W, YHR056C, YHR101C, YHR102W, YIL003W, YIL004C, YIL016W, YIL146C, YJL023C, YJL146W, YJL147C, YJL155C, YJL205C-A, YJR004C, YJR005W, YJR088C, YJR089W, YJR154W, YKL015W, YKL016C, YKL071W, YKL216W, YKR051W, YLL016W, YLL035W, YLL036C, YLL038C, YLR035C-A, YLR222C, YLR329W, YLR365W, YLR366W, YLR455W, YML001W, YML108W, YMR158W-A, YMR169C, YNL100W, YNL126W, YNL264C, YNR006W, YNR011C, YNR012W, YNR054C, YNR059W, YOL164W, YOR018W, YOR056C, YOR057W, YOR114W, YOR115C, YOR387C, YPL006W, YPL007C, YPL010W, YPL011C, YPL022W, YPL023C, YPL114W, YPL115C, YPL147W, YPL148C, YPL173W, YPL174C, YPL235W, YPL236C, YPL254W, YPR071W, YPR121W	YJR048W, YOR377W, YPL016W, YBR129C, YDR099W, YDR530C, YOL107W, YCL012W, YCR050C, YAR003W, YLR439W, YOR043W, YER152C, YNR066C, YJR148W, YLR099C, YBR132C, YMR291W, YPL156C, YNL154C, YJL152W, YGR294W, YPL066W, YKL030W, YIL062C, YJL206C, YHR136C, YFR055W, YHR135C, YHR137W	None	"A | 0.574 0.060 0.050 0.010 0.520 0.851 0.297 0.010 0.010 0.020 0.020 0.030 0.505 
C | 0.307 0.010 0.110 0.871 0.010 0.010 0.584 0.970 0.208 0.158 0.010 0.576 0.337 
G | 0.020 0.150 0.800 0.030 0.430 0.069 0.099 0.010 0.010 0.762 0.080 0.091 0.010 
T | 0.099 0.780 0.040 0.089 0.040 0.069 0.020 0.010 0.772 0.059 0.890 0.303 0.149 
"
AFT1	YGL071W, RCS1	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	TTTGCACCC	5.6469312e-26	7.89	11.6629	10.39	"Transcription factor involved in iron utilization and homeostasis; binds the consensus site PyPuCACCCPu and activates the expression of target genes in response to changes in iron availability
"	No Data	No Data	MIG1, RSF2, SOK2	"A | 0.394 0.370 0.090 0.040 0.010 0.970 0.010 0.030 0.010 
C | 0.061 0.130 0.060 0.010 0.901 0.010 0.970 0.950 0.790 
G | 0.121 0.110 0.190 0.940 0.010 0.010 0.010 0.010 0.010 
T | 0.424 0.390 0.660 0.010 0.079 0.010 0.010 0.010 0.190 
"
AFT2	YPL202C	Fordyce et. al.	http://www.ncbi.nlm.nih.gov/pubmed/20802496	GGGGTGTG	2.4100839e-29	7.74	10.1081	9.57	"Iron-regulated transcriptional activator; activates genes involved in intracellular iron use and required for iron homeostasis and resistance to oxidative stress; similar to Aft1p
"	YBL009W, YBL010C, YBL109W, YBL111C, YBL112C, YBL113C, YBR057C, YBR077C, YBR078W, YBR080C, YBR102C, YBR103W, YBR216C, YBR217W, YCR018C-A, YCR019W, YCR096C, YCR105W, YCR107W, YDL045W-A, YDL089W, YDL090C, YDL114W, YDL115C, YDL154W, YDL184C, YDR179C, YDR179W-A, YDR282C, YDR473C, YDR534C, YDR543C, YEL074W, YEL075C, YEL076C, YEL076C-A, YFR041C, YFR042W, YGL227W, YGL259W, YGR116W, YHL010C, YHL011C, YHL042W, YHL049C, YHR005C, YHR012W, YHR085W, YHR090C, YHR091C, YHR147C, YHR148W, YIL027C, YIL038C, YIL070C, YIL082W, YIL083C, YIL177C, YJL205C-A, YJL225C, YJR135C, YKL009W, YKL010C, YKL049C, YKL077W, YKL169C, YKR017C, YKR052C, YKR056W, YKR060W, YLR014C, YLR015W, YLR034C, YLR067C, YLR068W, YLR125W, YLR181C, YLR182W, YLR261C, YLR262C, YLR284C, YLR285W, YLR410W-A, YLR410W-B, YLR462W, YLR464W, YLR466W, YML133C, YMR126C, YMR150C, YMR152W, YMR154C, YMR155W, YMR200W, YMR218C, YMR219W, YNL101W, YNL214W, YNL268W, YNL270C, YNL337W, YNL338W, YNL339C, YOL023W, YOL144W, YOL145C, YOR226C, YOR227W, YPL034W, YPL283C, YPR176C, YPR178W	YLR216C, YHR146W, YJL115W, YKL043W, YDR207C, YMR009W, YMR042W, YOR190W, YOR220W, YLR026C, YPL016W, YBR126C, YFL013W-A, YGR033C, YIR001C, YOR317W, YER030W, YIL020C, YML027W, YMR314W, YMR316W, YBR093C, YFR004W, YMR070W, YMR072W, YNL180C, YDR281C, YER029C, YKL142W, YLR119W, YLR183C, YIL124W, YOR261C, YGR132C, YHR127W, YJL123C, YKL119C, YLR438C-A, YLR412W, YOR075W, YPL055C, YHL021C, YOR198C, YDL135C, YFR041C, YLR099C, YOR074C, YOR386W, YKL026C, YNL155W, YOL082W, YOR357C, YPL120W, YPL156C, YBR101C, YMR144W, YOR298C-A, YGR253C, YNL065W, YOL002C, YBR209W, YNL289W, YPL066W, YOL032W, YDR209C, YEL060C, YGR137W, YGR167W, YOR052C, YOR054C, YOR367W, YLR140W, YPL130W, YBR056W, YBR026C, YOR027W, YCR007C, YDR425W, YGL255W, YIL103W, YOL038W, YPL202C, YBR244W, YJL076W, YLR079W, YLR049C, YPL075W, YBR116C, YDL023C, YPR076W, YCL040W, YJR014W, YDL022W, YKL007W, YNL166C, YOL101C, YML049C, YNL007C	CAT8, FHL1, GSM1, MIG1, MIG3, RAP1, RSF2, SFP1, SUT1, TYE7	"A | 0.190 0.290 0.010 0.010 0.010 0.010 0.010 0.180 
C | 0.270 0.030 0.010 0.010 0.020 0.010 0.386 0.240 
G | 0.370 0.600 0.970 0.970 0.010 0.970 0.010 0.380 
T | 0.170 0.080 0.010 0.010 0.960 0.010 0.594 0.200 
"
ARG80	YMR042W, ARGRI, ARGR1	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	TTTCCGCACTAG	0.003748323	8.25	6.87242	10.04	"Transcription factor involved in regulation of arginine-responsive genes; acts with Arg81p and Arg82p
"	YBL019W, YBL074C, YBR028C, YCR018C-A, YCR019W, YDL044C, YDL068W, YDL071C, YDR003W, YDR012W, YDR042C, YDR048C, YDR064W, YDR065W, YDR098C-A, YDR098C-B, YDR131C, YDR160W, YDR210W-D, YDR245W, YDR279W, YDR434W, YDR468C, YDR469W, YDR473C, YDR495C, YEL050C, YER013W, YER041W, YER069W, YER077C, YER115C, YER135C, YER138C, YFL023W, YFL024C, YFR001W, YGL001C, YGL192W, YGL194C, YGL202W, YGL204C, YGR218W, YGR283C, YHR011W, YHR155W, YJL088W, YJL096W, YJL097W, YJL175W, YJL191W, YJL192C, YJR100C, YKL057C, YLR287C, YLR302C, YML031W, YML098W, YML099C, YMR098C, YMR194W, YNL050C, YNL146W, YNL258C, YNR050C, YOL058W, YOL079W, YOL115W, YOL140W, YOR005C, YOR280C, YOR282W, YOR302W, YOR303W, YOR369C, YPL123C, YPL125W, YPL198W, YPL265W, YPR104C	YJR048W, YJR085C, YDR222W, YOR033C, YOR377W, YDL067C, YEL076C, YEL017C-A, YOR038C, YPL014W, YPL016W, YMR103C, YOL104C, YOL140W, YDR276C, YGL071W, YGR248W, YGR250C, YMR256C, YPL112C, YDR161W, YFR006W, YGR064W, YMR104C, YOL105C, YPL271W, YDR279W, YER057C, YGR211W, YGR183C, YLR121C, YLR183C, YML084W, YMR285C, YPL111W, YCR021C, YHR001W-A, YLR252W, YOR231W, YOR267C, YPL245W, YDL072C, YOR043W, YOR075W, YER150W, YIL087C, YLR251W, YJR148W, YML100W, YBR230C, YJL088W, YLR438W, YOR074C, YLR380W, YMR084W, YER038C, YGR008C, YIR035C, YLR343W, YLR375W, YOR324C, YDR346C, YIL059C, YNR038W, YPL087W, YOL058W, YGR138C, YGR139W, YKL120W, YDL048C, YOR361C, YOR302W, YHR219W, YLL012W, YLR387C, YNL160W, YOL119C, YOL123W, YOR303W, YER067W, YER069W, YGL090W, YJL166W, YBR054W, YJR046W, YLR297W, YCR031C, YDR055W, YMR001C, YMR034C, YEL037C, YGR173W, YHR135C, YHR137W, YJL076W, YLR049C, YLR452C, YLR427W, YMR181C, YMR211W, YMR250W, YOR026W, YJR135W-A, YLL026W, YPR044C, YLR178C, YLR395C, YDL183C, YML081C-A, YOR150W	BAS1, GCN4, RSF2	"A | 0.035 0.031 0.158 0.074 0.051 0.229 0.176 0.360 0.123 0.199 0.427 0.029 
C | 0.244 0.086 0.102 0.564 0.837 0.168 0.373 0.322 0.355 0.147 0.258 0.024 
G | 0.101 0.088 0.199 0.133 0.060 0.355 0.102 0.296 0.283 0.326 0.220 0.929 
T | 0.620 0.795 0.541 0.229 0.052 0.248 0.350 0.023 0.239 0.328 0.096 0.018 
"
ARG81	YML099C, ARGRII, ARGR2	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	GTGACTCT	1.5020386e-07	5.2	10.8156	9.69	"Zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type, involved in the regulation of arginine-responsive genes; acts with Arg80p and Arg82p
"	YBR012W-A, YBR012W-B, YBR099C, YBR159W, YBR178W, YCR039C, YCR040W, YCR041W, YDL068W, YDL071C, YDL152W, YDR042C, YDR084C, YDR098C, YDR282C, YDR372C, YDR373W, YDR426C, YDR427W, YDR491C, YDR493W, YDR522C, YEL050C, YER007C-A, YER069W, YFL023W, YFL024C, YFL034W, YGL188C, YGR024C, YGR174C, YHR179W, YHR193C, YHR194W, YJL032W, YJL059W, YJL085W, YJL088W, YKL057C, YKL072W, YKR056W, YLR322W, YLR398C, YLR435W, YML098W, YML099C, YMR057C, YMR058W, YNL337W, YNR052C, YOL058W, YOL121C, YOL139C, YOL140W, YOR302W, YOR303W, YPL130W, YPL265W, YPL266W	YLR276C, YOR191W, YPL211W, YPR080W, YDR187C, YGR153W, YOR003W, YFL013W-A, YOL140W, YPL283C, YPL111W, YGR296W, YGL244W, YKL088W, YJL088W, YKL087C, YLR438W, YLR411W, YPR119W, YDL039C, YDR472W, YDR504C, YGR038C-B, YMR141C, YNL123W, YNL187W, YOR325W, YCL028W, YDL164C, YDL228C, YGL145W, YGL117W, YML037C, YMR324C, YOR137C, YOR139C, YOR109W, YOR141C, YOR171C, YMR138W, YPL275W, YJL222W, YCR026C, YCR061W, YDR024W, YDR084C, YDR086C, YDR384C, YDR386W, YER129W, YER160C, YGL221C, YHL026C, YHR010W, YIL096C, YLR262C-A, YLR264W, YNL095C, YOL058W, YOL002C, YDL180W, YAR023C, YBR241C, YDR210W, YGL029W, YPR094W, YDR246W, YGL188C, YML097C, YDL115C, YNL161W, YNL193W, YOL154W, YOR302W, YGR230W, YLR142W, YDL047W, YDR515W, YLR014C, YMR118C, YOL119C, YOR303W, YER069W, YML099C, YML100W-A, YPL157W, YCR006C, YKR037C, YAL033W, YEL067C, YGR172C, YHR136C, YHR170W, YKL099C, YMR247C, YPR108W, YBL106C, YCR071C, YDR027C, YJR103W, YLR265C, YMR034C, YDR243C, YOR034C, YDL186W, YER076C, YLR148W, YFL068W, YKL038W, YLL057C, YMR157C, YCL010C, YIL071C, YIL010W, YKL224C, YKL162C, YML046W, YOR122C	CAT8, STB4	"A | 0.300 0.040 0.080 0.970 0.010 0.010 0.010 0.320 
C | 0.060 0.010 0.010 0.010 0.970 0.010 0.970 0.320 
G | 0.420 0.020 0.900 0.010 0.010 0.010 0.010 0.020 
T | 0.220 0.930 0.010 0.010 0.010 0.970 0.010 0.340 
"
ARO80	YDR421W	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	CGGTAATTATCGG	2.781104e-09	11.42	9.76573	11.98	"Zinc finger transcriptional activator of the Zn2Cys6 family; activates transcription of aromatic amino acid catabolic genes in the presence of aromatic amino acids
"	YBR012W-A, YBR012W-B, YBR099C, YBR152W, YBR160W, YCL065W, YCL066W, YCL067C, YCL074W, YCR018C-A, YCR019W, YCR039C, YCR040W, YCR041W, YDL091C, YDR048C, YDR183W, YDR184C, YDR290W, YDR291W, YDR370C, YDR371W, YDR375C, YDR376W, YDR377W, YDR378C, YDR379W, YDR380W, YDR381W, YDR382W, YDR421W, YDR468C, YDR469W, YDR523C, YER061C, YFL059W, YFL060C, YGR053C, YGR054W, YGR166W, YGR244C, YHR132C, YHR133C, YHR134W, YHR135C, YHR136C, YHR137W, YHR138C, YHR139C, YHR139C-A, YHR140W, YHR141C, YHR142W, YHR143W, YJL008C, YJR001W, YKL051W, YKL052C, YKL072W, YKR059W, YKR060W, YLR082C, YMR194W, YMR283C, YNL012W, YNL013C, YNL117W, YNL118C, YNL122C, YNL123W, YNL124W, YNL125C, YNL126W, YNL337W, YNR006W, YOL001W, YOL002C, YOL116W, YOR005C, YOR110W, YOR205C, YOR206W, YOR218C, YOR273C, YOR274W, YPL018W, YPL019C, YPL251W, YPL253C, YPR155C, YPR162C	YCR040W, YER178W, YGR280C, YIL082W-A, YJR020W, YOR225W, YOR257W, YDL131W, YFR032C-A, YGL009C, YHR174W, YBR029C, YBR031W, YER146W, YMR044W, YOR252W, YOR226C, YCR097W-A, YHR143W-A, YJL052W, YLR405W, YNL244C, YDR096W, YGR063C, YHR053C, YNL147W, YNL149C, YOR287C, YOR351C, YPR020W, YPL187W, YGL075C, YHR208W, YKL172W, YOR103C, YBR091C, YDR461W, YGR064W, YHR021C, YNL146W, YOL077W-A, YNL280C, YCL018W, YDR281C, YIL015W, YLR185W, YML055W, YCL065W, YDR378C, YLR287C-A, YNL030W, YPL183W-A, YDL106C, YHR123W, YNL279W, YOR045W, YBR011C, YCR045C, YJR148W, YBR162W-A, YER001W, YEL021W, YLR348C, YOL144W, YOL086C, YOR357C, YGR192C, YKL209C, YKL178C, YLR343W, YLR349W, YNL150W, YOL143C, YOR221C, YBR262C, YIL027C, YKL177W, YMR323W, YHR010W, YLR262C-A, YLR234W, YOR239W, YGR140W, YLR040C, YLR420W, YNL259C, YOR393W, YCL066W, YHR005C-A, YIL127C, YOR210W, YDL081C, YKL120W, YLR041W, YLR043C, YOR020C, YCR097W, YFL026W, YGR015C, YHR072W-A, YLR388W, YOL126C, YPR062W, YDR322C-A, YGL089C, YBR145W, YFL023W, YNL162W, YPL281C, YBR268W, YJR004C, YKL216W, YMR303C, YNR044W, YDR056C, YLR303W, YAL033W, YER019C-A, YGL031C, YGR148C, YHR141C, YJL141C, YCR028C-A, YDR421W, YLR302C, YNL070W, YGL032C, YGR114C, YLR051C, YLR421C, YBR118W, YGR025W, YJR135W-A, YOL132W, YDL184C, YJR009C, YKL164C, YKL163W, YML081C-A, YOR182C	None	"A | 0.052 0.091 0.018 0.243 0.373 0.569 0.198 0.085 0.276 0.212 0.053 0.026 0.076 
C | 0.827 0.044 0.062 0.223 0.180 0.137 0.146 0.339 0.234 0.028 0.876 0.151 0.066 
G | 0.058 0.833 0.797 0.100 0.075 0.170 0.188 0.187 0.247 0.208 0.035 0.748 0.834 
T | 0.063 0.032 0.123 0.434 0.372 0.124 0.468 0.388 0.244 0.552 0.036 0.075 0.024 
"
ARR1	YPR199C, ACR1, YAP8	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	GTTACTAATC	0.08567418	6.25	5.9877	9.15	"Transcriptional activator of the basic leucine zipper (bZIP) family, required for transcription of genes involved in resistance to arsenic compounds
"	YAL017W, YAL018C, YBR040W, YBR057C, YCL065W, YCL066W, YCL067C, YCR024C, YCR039C, YCR040W, YCR041W, YCR096C, YDL068W, YDL071C, YDR042C, YDR052C, YDR084C, YDR101C, YDR210W, YDR210W-D, YDR308C, YDR317W, YDR463W, YEL001C, YER007C-A, YER041W, YER078C, YER079W, YER138C, YFR001W, YGR024C, YGR188C, YGR190C, YHR087W, YHR138C, YHR195W, YJL148W, YJR044C, YKL057C, YKL118W, YLL016W, YLR022C, YLR023C, YLR397C, YLR439W, YML048W-A, YML124C, YML125C, YMR014W, YMR086C-A, YMR087W, YMR132C, YMR133W, YMR135W-A, YMR165C, YMR204C, YNL188W, YNL241C, YNR018W, YOR001W, YOR154W, YPL034W, YPL050C, YPL261C, YPR198W	YMR220W, YOR039W, YPL053C, YNL051W, YPL016W, YML027W, YMR314W, YBR093C, YDR099W, YFR006W, YMR072W, YOR320C, YGL175C, YJR089W, YLR100W, YML004C, YMR173W, YOR043W, YPR120C, YMR052W, YJR148W, YKR023W, YDL071C, YDL073W, YLR099C, YLR101C, YMR172W, YOR008C-A, YOR386W, YDL045C, YBR103W, YDL044C, YIL128W, YMR027W, YML130C, YKL095W, YNL293W, YER138W-A, YMR062C, YMR036C, YOR214C, YBL051C, YGR274C, YIL044C, YMR276W, YBR089W, YBR121C, YFL068W, YGR024C, YGR086C, YKL007W, YOL097C, YOR372C, YPR069C, YPR041W, YIL041W, YNR052C	None	"A | 0.214 0.219 0.172 0.621 0.107 0.024 0.754 0.758 0.156 0.103 
C | 0.127 0.020 0.077 0.072 0.746 0.085 0.110 0.022 0.233 0.624 
G | 0.556 0.032 0.054 0.135 0.119 0.080 0.070 0.027 0.281 0.095 
T | 0.103 0.729 0.697 0.172 0.028 0.811 0.066 0.193 0.330 0.178 
"
ASG1	YIL130W	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	CCGGCCGAGTTCCGG	0.2051048	9.58	16.5814	18.47	"Zinc cluster protein proposed to function as a transcriptional regulator involved in the stress response; null mutants have a respiratory deficiency, calcofluor white sensitivity and slightly increased cycloheximide resistance
"	No Data	No Data	None	"A | 0.051 0.020 0.010 0.050 0.232 0.263 0.040 0.480 0.060 0.350 0.110 0.040 0.020 0.010 0.071 
C | 0.859 0.890 0.100 0.070 0.424 0.505 0.060 0.070 0.070 0.060 0.320 0.840 0.870 0.080 0.020 
G | 0.020 0.080 0.870 0.840 0.283 0.061 0.650 0.220 0.650 0.080 0.140 0.070 0.100 0.890 0.859 
T | 0.071 0.010 0.020 0.040 0.061 0.172 0.250 0.230 0.220 0.510 0.430 0.050 0.010 0.020 0.051 
"
ASH1	YKL185W	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	CCGAATCAGG	1.50265e-12	9.29	10.4696	11.25	"Zinc-finger inhibitor of HO transcription; mRNA is localized and translated in the distal tip of anaphase cells, resulting in accumulation of Ash1p in daughter cell nuclei and inhibition of HO expression; potential Cdc28p substrate
"	YCR064C, YCR065W, YDR077W, YDR544C, YDR545W, YER152C, YER153C, YER154W, YHR193C, YHR194W, YIL099W, YIL122W, YML133C, YNL289W, YNL338W, YNL339C	YHR113W, YKL043W, YOR065W, YAL008W, YOR036W, YOR378W, YBR126C, YHR053C, YHR055C, YOR317W, YDL220C, YMR284W, YPL078C, YBR093C, YBR097W, YDR461W, YDR497C, YFR006W, YIL015W, YIL124W, YIL156W, YDR260C, YHR121W, YER119C, YOL055C, YJR148W, YLR099C, YLR438W, YOL082W, YOL150C, YOR298W, YPL092W, YFL021W, YMR110C, YPL137C, YCL027W, YNL312W, YKR093W, YML131W, YLR042C, YJR033C, YML128C, YMR027W, YML130C, YDR209C, YGR141W, YPL004C, YKL001C, YOL152W, YMR272C, YMR304C-A, YOL151W, YML067C, YNR044W, YBR056W, YCR065W, YDR214W, YGR150C, YHR136C, YOR027W, YBR244W, YGL032C, YKL067W, YLR049C, YLR452C, YLR423C, YDR104C, YMR305C, YNL200C, YPR005C, YGR241C, YLR173W	MBP1, MCM1, SWI6	"A | 0.001 0.001 0.391 0.376 0.809 0.006 0.223 0.505 0.001 0.015 
C | 0.729 0.960 0.080 0.189 0.001 0.048 0.503 0.002 0.037 0.002 
G | 0.039 0.001 0.447 0.342 0.189 0.037 0.037 0.311 0.828 0.851 
T | 0.231 0.038 0.082 0.093 0.001 0.909 0.237 0.182 0.134 0.132 
"
AZF1	YOR113W	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	TTTTTCTTTTTCTGTTTC	4.840699e-13	13.05	14.7675	16.21	"Zinc-finger transcription factor, involved in induction of CLN3 transcription in response to glucose; genetic and physical interactions indicate a possible role in mitochondrial transcription or genome maintenance
"	YAL032C, YAL037W, YAR009C, YAR019C, YAR023C, YBL029W, YBL074C, YBR157C, YBR158W, YBR159W, YBR230C, YBR281C, YBR282W, YDL037C, YDL122W, YDL245C, YDL246C, YDR001C, YDR002W, YDR006C, YDR007W, YDR042C, YDR257C, YDR259C, YDR441C, YDR442W, YDR524C, YDR525W, YDR526C, YEL047C, YEL050C, YEL055C, YEL062W, YEL063C, YER001W, YER007C-A, YER097W, YER098W, YER101C, YER102W, YFL034W, YGL001C, YGL012W, YGL013C, YGL115W, YGL135W, YGL136C, YGL189C, YGL195W, YGR001C, YGR084C, YGR085C, YGR190C, YHL034C, YHL041W, YIL014W, YIL015C-A, YIL056W, YIL099W, YIR020C, YJL048C, YJL148W, YJL191W, YJL192C, YJR100C, YJR158W, YLL019C, YLL020C, YLR023C, YLR027C, YLR074C, YLR075W, YLR166C, YLR167W, YLR367W, YLR368W, YLR413W, YML007W, YML008C, YML124C, YNL111C, YNL145W, YNR050C, YOL121C, YOR032C, YOR102W, YOR106W, YOR108W, YOR272W, YOR315W, YOR360C, YOR369C, YPL130W, YPL143W, YPR010C, YPR013C, YPR080W	YPL016W, YML089C, YNL300W, YEL050C, YKL119C, YOL150C, YOR298W, YBL061C, YBR296C, YMR027W, YOR367W, YOL151W, YPL159C, YEL038W, YLR079W, YPR008W, YOR034C, YMR306W	None	"A | 0.014 0.332 0.001 0.001 0.027 0.180 0.014 0.111 0.069 0.069 0.001 0.152 0.235 0.250 0.014 0.001 0.055 0.042 
C | 0.216 0.064 0.001 0.001 0.015 0.549 0.007 0.015 0.098 0.181 0.416 0.764 0.015 0.001 0.299 0.125 0.007 0.540 
G | 0.007 0.022 0.042 0.001 0.223 0.049 0.216 0.181 0.015 0.015 0.001 0.015 0.181 0.500 0.007 0.292 0.216 0.001 
T | 0.763 0.582 0.956 0.997 0.735 0.222 0.763 0.693 0.818 0.735 0.582 0.069 0.569 0.250 0.680 0.582 0.722 0.417 
"
BAS1	YKR099W	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	TGACTCTGGC	4.62684e-18	8.32	10.6837	10.62	"Myb-related transcription factor involved in regulating basal and induced expression of genes of the purine and histidine biosynthesis pathways; also involved in regulation of meiotic recombination at specific genes
"	YAL044C, YAL045C, YAL046C, YAL051W, YBR025C, YBR099C, YCL030C, YCR018C-A, YCR019W, YDL044C, YDL063C, YDL104C, YDR017C, YDR018C, YDR019C, YDR020C, YDR021W, YDR048C, YDR064W, YDR319C, YDR408C, YDR409W, YEL055C, YER061C, YER091C, YER092W, YER109C, YFL059W, YFL060C, YGL115W, YGL186C, YGL234W, YGL236C, YGL247W, YGR061C, YGR183C, YGR204W, YJL191W, YJL192C, YKL072W, YKL111C, YKL118W, YKL164C, YKL217W, YKR010C, YKR056W, YKR079C, YKR080W, YKR081C, YKR082W, YLL027W, YLR057W, YLR058C, YLR059C, YLR060W, YLR061W, YLR358C, YLR359W, YMR070W, YMR098C, YMR120C, YMR186W, YMR187C, YMR188C, YMR189W, YMR190C, YMR191W, YMR193W, YMR243C, YMR244W, YMR300C, YNL009W, YNL145W, YNL188W, YNL220W, YNL221C, YOL023W, YOL121C, YOR128C, YOR268C, YOR269W, YOR273C, YOR274W, YPL018W, YPL019C, YPL251W, YPL253C, YPR135W, YPR198W	YCR012W, YCR040W, YDR034C-C, YDR366C, YER172C, YGL232W, YGL234W, YHL014C, YIL116W, YJR016C, YJR048W, YLR244C, YLR216C, YLR278C, YMR012W, YMR045C, YOL013W-A, YOR192C-A, YOR223W, YOR193W, YOR259C, YPL237W, YMR016C, YMR109W, YAL007C, YBR187W, YBR189W, YBR191W, YDL064W, YDL100C, YDR222W, YFR036W, YGR121C, YHR146W, YKL043W, YLR058C, YLR090W, YLR029C, YLR062C, YMR194W, YOR065W, YOR071C, YOR377W, YPL017C, YDR207C, YCR009C, YCR013C, YDR034C-D, YDR035W, YDR365W-B, YDR429C, YDR399W, YGL231C, YGR277C, YHL015W, YLR217W, YML113W, YMR046C, YNL084C, YOR192C, YOR222W, YOR192C-B, YOR226C, YPL238C, YPL177C, YPL208W, YPL240C, YPL210C, YAL053W, YML010W-A, YDR187C, YGL038C, YGR122C-A, YHR112C, YHR145C, YJL052W, YLR055C, YLR026C, YLR089C, YLR028C, YLR061W, YLR405W, YMR189W, YNL240C, YOR038C, YPL018W, YER011W, YBR092C, YBR124W, YDR098C, YFL012W, YGR001C, YGR061C, YGR033C, YGR035C, YJR145C, YKL016C, YLL001W, YLL034C, YMR134W, YNL175C, YOL104C, YOL077C, YOR317W, YPL266W, YPL110C, YBL027W, YCL019W, YDL162C, YDL226C, YER055C, YER056C-A, YER030W, YGL103W, YGL105W, YIL015C-A, YIL052C, YJL145W, YJL177W, YKL141W, YLR152C, YLR156W, YLR186W, YLR157C-A, YML027W, YMR314W, YMR256C, YMR290C, YNL333W, YNL303W, YNR028W, YJL050W, YBR093C, YBR129C, YDL004W, YDR127W, YDR159W, YDR098C-A, YDR161W, YDR461W, YDR497C, YFR006W, YJL017W, YMR070W, YMR131C, YMR135C, YNL174W, YNL178W, YNL116W, YOL103W-B, YOL139C, YOR344C, YPL271W, YBL024W, YBL058W, YCL020W, YDR340W, YDR281C, YER029C, YGL136C, YGL076C, YGR211W, YGR183C, YHR211W, YIL051C, YJL148W, YLR183C, YLR155C, YLR157C, YML024W, YNL300W, YNL332W, YNL302C, YNL334C, YNL306W, YPL079W, YPL081W, YBR010W, YBR012C, YBR012W-B, YDR046C, YHR001W-A, YIL124W, YJR026W, YJR091C, YJR028W, YJR060W, YKR081C, YLR282C, YLR227W-A, YLR287C-A, YMR020W, YMR050C, YMR052C-A, YML125C, YNL030W, YOR197W, YOR229W, YOR261C, YOR199W, YOR201C, YPL245W, YPL215W, YAL044C, YAR010C, YAR015W, YBR195C, YBR199W, YDL134C, YDL136W, YDR224C, YEL024W, YGR161C-C, YGR161W-A, YGR105W, YJL059W, YJL063C, YKL117W, YLR100W, YML004C, YLR410W-B, YLR441C, YLR412W, YNL279W, YNL284C-A, YOR009W, YOR073W, YOR043W, YOR389W, YBL091C, YBL092W, YBR009C, YBR012W-A, YCL056C, YCR047C, YCL064C, YER148W, YER122C, YGR285C, YIL117C, YJR025C, YJR027W, YKR046C, YKR048C, YKR080W, YLR285W, YLR256W-A, YMR017W, YML120C, YMR049C, YMR051C, YML124C, YNL054W-A, YNL059C, YOL052C, YOL022C, YOR260W, YOR198C, YOR230W, YOR200W, YOR232W, YOR202W, YOR234C, YPL249C-A, YJR148W, YLL008W, YAR009C, YDL135C, YDL075W, YDR225W, YEL051W, YGL016W, YGL048C, YGR161C-D, YGR161W-B, YJL122W, YLR099C, YLR101C, YLR437C, YLR438W, YLR410W-A, YNL248C, YNL220W, YOR072W, YOR046C, YPL026C, YDR502C, YGR038C-B, YHR089C, YLR007W, YLR348C, YMR145C, YNL155W, YOL144W, YOL088C, YOR323C, YOR298W, YPR060C, YLL016W, YNR016C, YBL003C, YBR265W, YCL030C, YDR347W, YGL111W, YIL022W, YIL056W, YHR215W, YIL060W, YJL217W, YKL145W, YKL180W, YLR192C, YLR196W, YMR291W, YNL309W, YNR033W, YNR035C, YPL086C, YPL088W, YPL090C, YPL122C, YPL092W, YBR101C, YDL040C, YDR471W, YFL016C, YGR038W, YGR012W, YIR035C, YJR123W, YJR156C, YLL037W, YLL041C, YLR343W, YLR349W, YMR142C, YOL111C, YOL143C, YOR294W, YOR298C-A, YOR328W, YAR071W, YAR075W, YBL002W, YBL032W, YCL025C, YBR296C, YDL231C, YDL201W, YDR316W-A, YDR346C, YER031C, YER090W, YER062C, YER064C, YGL078C, YGL112C, YGL148W, YGR187C, YGR253C, YKL212W, YKL181W, YKL214C, YLR129W, YLR161W, YLR163C, YLR195C, YML035C, YML063W, YML094W, YML095C-A, YMR290W-A, YMR321C, YNR001C, YNL310C, YNR003C, YNL312W, YNR036C, YNL314W, YNR038W, YPL117C, YPL091W, YBL099W, YBL101W-B, YBR052C, YER131W, YGL215W, YIL094C, YKR061W, YLR291C, YLR232W, YMR061W, YNL036W, YNL067W, YNL099C, YOR239W, YPL257W-A, YDL082W, YDR261W-A, YDR234W, YML010C-B, YLR420W, YMR242C, YNL289W, YOR393W, YBL101W-A, YDR019C, YDR447C, YDR417C, YER156C, YER188W, YER159C-A, YGL245W, YGL188C, YHL001W, YJR069C, YKR025W, YKR056W, YLR231C, YML126C, YML130C, YMR031C, YNL031C, YNL064C, YNL096C, YNR072W, YOL057W, YOL059W, YOR240W, YOR272W, YPL220W, YPL190C, YPL226W, YLR454W, YAR018C, YDL143W, YDL083C, YDR209C, YDR237W, YHR133C, YKL120W, YLR075W, YLR413W, YML010W, YLR448W, YMR235C, YNL260C, YNL290W, YPL032C, YPL063W, YBR084C-A, YDL021W, YFL059W, YGR049W, YJL034W, YKL030W, YLL044W, YMR120C, YOL126C, YOR331C, YOR302W, YOR367W, YPR002W, YBL041W, YBL072C, YCL038C, YDR298C, YGR260W, YJR007W, YLR166C, YLR198C, YLR172C, YML045W-A, YMR300C, YMR272C, YBR143C, YDR174W, YDR509W, YDR481C, YFL058W, YFL060C, YJR133W, YLR008C, YLL045C, YLR321C, YLR355C, YLR325C, YMR116C, YMR146C, YMR119W-A, YMR121C, YNL160W, YOL119C, YOL121C, YOL123W, YOR332W, YOR362C, YOR303W, YBL005W-A, YBL042C, YCL031C, YER094C, YER100W, YGR259C, YGR261C, YIL063C, YKL216W, YKL185W, YKL156W, YKL220C, YLR197W, YLR167W, YLR199C, YLR203C, YML067C, YML040W, YML042W, YML073C, YPL157W, YPL129W, YPL131W, YPL163C, YBR054W, YBR026C, YCR004C, YER138C, YHL004W, YIL172C, YJR076C, YLR268W, YMR033W, YMR035W, YMR067C, YNL109W, YOL066C, YOL041C, YPL197C, YPL199C, YPL203W, YNL054W, YAL062W, YAR053W, YBR181C, YDR210W-D, YGL031C, YGR148C, YGR176W, YHR136C, YHR200W, YML021C, YMR182C, YMR214W, YMR186W, YOR095C, YCR003W, YCR005C, YDR055W, YFL002W-B, YGL255W, YHL003C, YHL033C, YHR013C, YIL133C, YJR045C, YLR267W, YLR269C, YMR001C, YMR003W, YMR064W, YMR005W, YMR038C, YNL108C, YOL007C, YOL038W, YOR212W, YOR276W, YOR278W, YOR218C, YPL257W-B, YPL198W, YPL202C, YPL263C, YJR137C, YKL009W, YBR244W, YBR248C, YDR210W-A, YDR239C, YDR210W-C, YDR241W, YEL037C, YGL032C, YGR118W, YHR203C, YJL074C, YLR047C, YLR049C, YLR421C, YMR246W, YPL042C, YPL075W, YPR158W-B, YBR087W, YDR120C, YFR028C, YFR031C-A, YGR085C, YGR027C, YHR046C, YKL035W, YLR017W, YMR093W, YNL141W, YOL132W, YOL103W-A, YOL166C, YOR369C, YOR309C, YOR373W, YOR343C-B, YPR044C, YOR034C, YDR365W-A, YER049W, YGR204W, YGR208W, YIL070C, YIL044C, YIL076W, YLR208W, YLR150W, YMR276W, YNR018W, YNR022C, YBR089W, YGR086C, YHR108W, YKL007W, YLR359W, YLR361C, YLR363C, YLR395C, YLR333C, YMR092C, YMR157C, YOL097C, YOL127W, YOL133W, YOR338W, YOR310C, YOR342C, YOR312C, YOR343C-A, YPR009W, YPR041W, YPR043W, YGR207C, YKR001C, YML109W, YNL007C, YMR277W, YNR050C, YNR052C, YOR184W, YER061C	ABF1, ARG80, GCN4, RTG3	"A | 0.033 0.056 0.920 0.004 0.004 0.003 0.017 0.171 0.208 0.149 
C | 0.006 0.014 0.003 0.908 0.035 0.955 0.268 0.074 0.227 0.414 
G | 0.051 0.903 0.038 0.004 0.004 0.003 0.244 0.386 0.303 0.079 
T | 0.911 0.026 0.038 0.085 0.958 0.040 0.472 0.371 0.262 0.359 
"
CAD1	YDR423C, YAP2	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	ATTAGTAAGC	4.875699e-27	9.48	12.4842	11.47	"AP-1-like basic leucine zipper (bZIP) transcriptional activator involved in stress responses, iron metabolism, and pleiotropic drug resistance; controls a set of genes involved in stabilizing proteins; binds consensus sequence TTACTAA
"	YAL058W, YBL008W, YBL034C, YBR046C, YBR047W, YBR057C, YBR280C, YCR037C, YDL104C, YDL239C, YDR036C, YDR037W, YDR132C, YDR135C, YDR137W, YDR543C, YEL044W, YEL045C, YEL046C, YER141W, YGL115W, YGL157W, YGR167W, YGR233C, YGR234W, YHL039W, YHL040C, YHR008C, YHR048W, YHR053C, YHR055C, YHR077C, YHR078W, YHR091C, YHR133C, YHR134W, YJL100W, YJL101C, YJR044C, YKL039W, YKL040C, YKL086W, YKL087C, YKL101W, YKL102C, YKL103C, YKL154W, YKL155C, YKR052C, YKR071C, YLL002W, YLL060C, YLL065W, YLR108C, YLR109W, YLR456W, YML116W, YML133C, YMR038C, YNL134C, YNL337W, YOL077W-A, YOL078W, YOL080C, YOL119C, YOR173W, YPL283C, YPR048W	YJR048W, YMR192W, YOR377W, YBL087C, YOR192C-B, YOR258W, YEL017C-A, YHR145C, YLR089C, YPL016W, YOL104C, YLR152C, YLR184W, YMR258C, YOR133W, YOR165W, YPL084W, YGR064W, YMR102C, YCL020W, YDR281C, YGR183C, YML022W, YBR012C, YCR050C, YCL065W, YDR410C, YHR001W-A, YAR010C, YHR152W, YLR410W-B, YOR043W, YOR075W, YPL060W, YCR093W, YCL058C, YJR027W, YNR066C, YJR148W, YGR161C, YGR161W-B, YLR035C-A, YLR099C, YHR214C-B, YIL060W, YJL191W, YMR291W, YPL156C, YDL040C, YLR345W, YMR108W, YMR110C, YOR356W, YPR055W, YDL231C, YHR214C-C, YCR024C-A, YER129W, YGR294W, YIL100W, YBR235W, YGR164W, YLR110C, YBL101W-A, YDR417C, YGL188C, YOL059W, YEL060C, YKL120W, YKL030W, YPR002W, YDR298C, YKL221W, YOL119C, YPR035W, YHR136C, YJL143W, YBL107W-A, YCR031C, YFL002W-B, YER138W-A, YIL133C, YIL103W, YLR300W, YPL228W, YDR210W-A, YDR210W-C, YDR213W, YHR135C, YJL076W, YMR211W, YPL075W, YPR158W-B, YDL023C, YOL103W-A, YOR343C-B, YIL011W, YKL192C, YDL022W, YLR395C, YMR123W, YPR043W, YGR209C, YIL069C, YML081C-A	None	"A | 0.811 0.026 0.007 0.850 0.159 0.016 0.834 0.986 0.004 0.030 
C | 0.116 0.002 0.008 0.027 0.155 0.004 0.147 0.002 0.006 0.901 
G | 0.042 0.009 0.005 0.006 0.664 0.006 0.006 0.005 0.607 0.011 
T | 0.032 0.963 0.979 0.116 0.022 0.974 0.012 0.007 0.383 0.057 
"
CAT8	YMR280C, MSP8, DIL1	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	CCGGAA	0.01089178	7.31	9.52132	7.87	"Zinc cluster transcriptional activator necessary for derepression of a variety of genes under non-fermentative growth conditions, active after diauxic shift, binds carbon source responsive elements
"	No Data	YCR040W, YOR225W, YGL009C, YOR351C, YPL187W, YHR208W, YDR461W, YNL146W, YCL018W, YIL015W, YLR348C, YKL178C, YLR343W, YLR349W, YOL143C, YOR221C, YKL177W, YMR294W, YLR040C, YLR420W, YCL066W, YKL120W, YLR041W, YFL026W, YOL126C, YER066W, YGL089C, YJR004C, YKL216W, YGL226W, YIL168W, YLR303W, YLR302C, YGL032C, YGR056W	AFT2, ARG81, MIG3, PDR1, RSC3, RSF2, SKN7, STP1, YRM1	"A | 0.010 0.010 0.010 0.010 0.650 0.320 
C | 0.970 0.970 0.010 0.010 0.130 0.180 
G | 0.010 0.010 0.970 0.970 0.210 0.280 
T | 0.010 0.010 0.010 0.010 0.010 0.220 
"
CBF1	YJR060W, CPF1, CEP1	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	GTCACGTG	1.2652122e-162	7.88	14.1818	11.38	"Helix-loop-helix protein that binds the motif CACRTG, which is present at several sites including MET gene promoters and centromere DNA element I (CDEI); required for nucleosome positioning at this motif; targets Isw1p to DNA
"	YAL026C, YAL053W, YAL054C, YBR049C, YBR051W, YBR089C-A, YBR090C, YBR222C, YBR224W, YBR225W, YBR249C, YBR250W, YCR092C, YCR093W, YDL020C, YDL058W, YDL059C, YDR508C, YDR510W, YEL024W, YEL025C, YEL043W, YER017C, YER060w-A, YER092W, YER094C, YER095W, YER099C, YER100W, YER111C, YER112W, YER114C, YER124C, YER125W, YFL017W-A, YFL018C, YFR018C, YFR019W, YFR030W, YGL252C, YGR116W, YGR204W, YGR223C, YGR224W, YHR089C, YHR098C, YHR099W, YHR136C, YHR137W, YIL074C, YIL088C, YIL126W, YIL127C, YIR017C, YIR018W, YJL115W, YJL116C, YJL117W, YJL119C, YJL133W, YJL167W, YJL168C, YJL209W, YJL211C, YJR009C, YJR010W, YJR095W, YKL007W, YKL008C, YKL015W, YKL016C, YKL191W, YKL192C, YLL008W, YLL009C, YLL010C, YLL055W, YLL056C, YLR081W, YLR092W, YLR139C, YLR142W, YLR149C, YLR150W, YLR155C, YLR156W, YLR157C, YLR160C, YLR174W, YNL036W, YNL037C, YNL094W, YNL095C, YNL220W, YNL221C, YNL277W, YNL282W, YNL283C, YNR033W, YOR038C, YOR039W, YOR064C, YOR065W, YOR327C, YOR328W, YPL068C, YPL093W, YPL094C, YPL096W, YPL204W, YPL206C, YPL221W	YGL171W, YHL048W, YIL116W, YJR016C, YNR059W, YOR193W, YBR187W, YBR189W, YDL131W, YDR222W, YGL039W, YGL009C, YJL115W, YLR058C, YOR033C, YOR377W, YPL049C, YBR005W, YKR072C, YML113W, YNL051W, YOL011W, YOL048C, YOR220W, YMR198W, YAL034C, YBR186W, YEL011W, YJL048C, YJL116C, YKL110C, YLR405W, YMR189W, YMR191W, YNL274C, YPL014W, YPL016W, YBR126C, YJR116W, YJR147W, YKL016C, YMR103C, YMR105C, YNL111C, YOR289W, YPR048W, YOR359W, YPL235W, YBR287W, YER053C, YER055C, YGR248W, YGR250C, YLR120C, YLR156W, YBR093C, YGR032W, YJL017W, YMR070W, YMR104C, YNL174W, YNL116W, YNL180C, YPL267W, YPR017C, YBL058W, YDR281C, YER029C, YER057C, YGR211W, YHR209W, YIL051C, YJL148W, YLR119W, YLR181C, YLR121C, YLR183C, YML082W, YMR251W-A, YNL332W, YNL336W, YCR048W, YCR050C, YCR021C, YDR074W, YHR001W-A, YLR282C, YLR257W, YML123C, YNL058C, YOL052C-A, YOR201C, YOR203W, YPL245W, YPL250C, YNL040W, YAR015W, YBR169C, YGL053W, YKL051W, YKL113C, YLR410W, YLR439W, YMR170C, YMR173W, YOR043W, YOR385W, YPL057C, YCR047C, YCL064C, YDR077W, YER150W, YIL119C, YNL027W, YOL052C, YOR202W, YPL212C, YJR148W, YML100W, YEL051W, YJL060W, YMR169C, YNL282W, YOR046C, YOR384W, YBR104W, YDR502C, YHR089C, YLR348C, YLR350W, YMR145C, YOL144W, YBR265W, YDL198C, YDL234C, YER036C, YER063W, YGL111W, YIL022W, YHR215W, YJL217W, YLR130C, YLR194C, YML093W, YPL086C, YPL090C, YPL122C, YPL154C, YPL092W, YFL014W, YGR008C, YHR030C, YLL039C, YLR349W, YMR144W, YOL115W, YAR071W, YDR348C, YER064C, YHR214W-A, YJL158C, YKL150W, YLR159W, YLR161W, YMR319C, YNR001C, YPL087W, YKR061W, YKR093W, YMR061W, YNL036W, YOL029C, YOL064C, YPL252C, YPL223C, YPL227C, YIL114C, YBR177C, YBR241C, YGR138C, YJL101C, YLR414C, YLR449W, YMR236W, YNL259C, YDR023W, YER158C, YGR295C, YIL127C, YKR025W, YLR258W, YML128C, YML132W, YNL096C, YNL037C, YPL251W, YPL190C, YMR008C, YAR018C, YAR027W, YDR235W, YGR139W, YGR110W, YJL134W, YKL120W, YMR173W-A, YMR235C, YMR175W, YMR239C, YOR052C, YPL063W, YDL048C, YFL030W, YGR079W, YGR049W, YHR097C, YIR044C, YMR120C, YOL156W, YBL070C, YGR234W, YJL167W, YLR142W, YMR300C, YMR304C-A, YNL319W, YDR174W, YDR115W, YFR022W, YGR078C, YIR043C, YJR158W, YLR321C, YLR355C, YNL160W, YNL192W, YOL119C, YOL153C, YOL093W, YOR360C, YBR302C, YMR301C, YNR009W, YNR044W, YER091C, YBR054W, YBR056W, YIL170W, YJR074W, YLR297W, YLR270W, YNL109W, YDL124W, YGR144W, YGR146C, YDR027C, YDR055W, YFL004W, YHL033C, YMR001C, YMR034C, YMR007W, YMR038C, YNL108C, YOL007C, YBR214W, YEL037C, YJL142C, YMR215W, YMR246W, YMR250W, YFR028C, YGR055W, YLL026W, YMR093W, YOR309C, YCL040W, YCL042W, YDL182W, YDL216C, YGR208W, YLR178C, YMR305C, YMR310C, YDR121W, YFL062W, YHR104W, YKL034W, YLR327C, YLR359W, YOL097C, YOR342C, YPR069C, YBL077W, YBL018C, YJL200C, YLR149C, YNL009W, YNR050C, YPL171C	GCN4, HMS1, INO2, MET32, MET4, YDR026C	"A | 0.245 0.029 0.011 0.985 0.004 0.018 0.017 0.001 
C | 0.002 0.003 0.978 0.001 0.938 0.018 0.008 0.007 
G | 0.737 0.081 0.005 0.012 0.006 0.961 0.004 0.984 
T | 0.016 0.887 0.006 0.002 0.052 0.003 0.971 0.008 
"
CEP3	YMR168C, CSL1, CBF3B, CBF3	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	GGCGACTTCGGAAATATGAG		13.95	13.7945	18.61	"Essential kinetochore protein, component of the CBF3 complex that binds the CDEIII region of the centromere; contains an N-terminal Zn2Cys6 type zinc finger domain, a C-terminal acidic domain, and a putative coiled coil dimerization domain
"	No Data	No Data	MIG3	"A | 0.090 0.240 0.232 0.130 0.410 0.110 0.030 0.010 0.010 0.010 0.010 0.788 0.890 0.660 0.210 0.347 0.120 0.202 0.420 0.170 
C | 0.180 0.150 0.434 0.310 0.150 0.570 0.366 0.030 0.960 0.280 0.010 0.040 0.010 0.140 0.320 0.277 0.160 0.162 0.110 0.130 
G | 0.580 0.480 0.061 0.480 0.210 0.170 0.089 0.010 0.020 0.700 0.970 0.141 0.030 0.100 0.110 0.149 0.190 0.434 0.300 0.570 
T | 0.150 0.130 0.273 0.080 0.230 0.150 0.515 0.950 0.010 0.010 0.010 0.030 0.070 0.100 0.360 0.228 0.530 0.202 0.170 0.130 
"
CHA4	YLR098C, SIL3, SIL2	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	CGGTTATAAGAAGCCGA	0.0106593689684711	8.98	7.57271	13.23	"DNA binding transcriptional activator, mediates serine/threonine activation of the catabolic L-serine (L-threonine) deaminase (CHA1); Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain
"	YBL025W, YBR245C, YBR251W, YBR272C, YCL038C, YCL063W, YCL064C, YCL065W, YCL066W, YCL067C, YCR039C, YCR040W, YCR041W, YDL034W, YDL036C, YDL054C, YDR056C, YDR057W, YDR076W, YDR149C, YDR177W, YDR304C, YDR322W, YDR355C, YDR523C, YER007C-A, YER044C, YER082C, YER084W, YER085C, YER086W, YER181C, YGL002W, YGL003C, YGL121C, YGL227W, YGR066C, YGR100W, YHR065C, YHR066W, YHR091C, YHR186C, YHR187W, YIL097W, YIL098C, YIL139C, YJL148W, YJL205C-A, YJR012C, YJR013W, YJR014W, YKL077W, YKL129C, YKR026C, YLR053C, YLR367W, YLR395C, YLR415C, YLR416C, YLR417W, YMR065W, YMR135W-A, YMR187C, YNL123W, YNL296W, YOL033W, YOL102C, YOR093C, YOR094W, YOR154W, YOR209C, YOR210W, YOR280C, YOR282W, YOR318C, YOR319W, YPL194W, YPR139C, YPR140W, YPR172W	YOR225W, YGR097W, YOR226C, YMR189W, YPL016W, YPR138C, YER081W, YGR211W, YIL051C, YLR441C, YOR043W, YCL063W, YCL064C, YLR099C, YPL273W, YCL025C, YDL201W, YDR344C, YKL177W, YMR321C, YPL119C, YLR258W, YAR018C, YKL120W, YKL001C, YLR355C, YNL160W, YPR035W, YER100W, YBL108W, YAL060W, YGL255W, YMR034C, YHR137W, YLR111W, YLR049C, YFL034C-A, YGR085C, YLR362W, YDL218W, YFL034C-B	None	"A | 0.041 0.068 0.117 0.218 0.109 0.559 0.194 0.304 0.363 0.121 0.348 0.314 0.155 0.293 0.158 0.017 0.561 
C | 0.808 0.074 0.102 0.176 0.169 0.097 0.305 0.286 0.205 0.055 0.192 0.138 0.255 0.391 0.483 0.083 0.166 
G | 0.079 0.759 0.760 0.148 0.311 0.134 0.165 0.240 0.191 0.494 0.227 0.306 0.339 0.125 0.219 0.833 0.084 
T | 0.072 0.099 0.021 0.458 0.412 0.210 0.336 0.170 0.241 0.329 0.232 0.242 0.251 0.192 0.140 0.067 0.189 
"
CIN5	YOR028C, YAP4, HAL6	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	ATTACGTAAGC	1.5127425e-54	6.64	9.08502	10.53	"Basic leucine zipper (bZIP) transcription factor of the yAP-1 family, mediates pleiotropic drug resistance and salt tolerance; nuclearly localized under oxidative stress and sequestered in the cytoplasm by Lot6p under reducing conditions
"	YAL037W, YBL029W, YBL030C, YBL043W, YBL044W, YBL045C, YBL060W, YBL061C, YBL063W, YBL064C, YBR007C, YBR008C, YBR054W, YBR067C, YBR068C, YBR069C, YBR070C, YBR071W, YBR157C, YBR182C, YBR183W, YBR196C, YCL024W, YCL025C, YCL046W, YCL047C, YCR102C, YDL003W, YDL037C, YDL129W, YDL168W, YDL169C, YDL170W, YDL171C, YDR033W, YDR042C, YDR077W, YDR089W, YDR132C, YDR210W, YDR259C, YDR300C, YDR301W, YDR338C, YDR343C, YDR345C, YDR441C, YDR442W, YDR479C, YDR480W, YDR504C, YDR505C, YDR508C, YDR510W, YDR533C, YEL006W, YEL011W, YEL040W, YEL044W, YEL045C, YEL046C, YEL052W, YEL053C, YER028C, YER038C, YER044C, YER045C, YER046W, YER073W, YER158C, YFL004W, YFL012W, YFL013C, YFR039C, YFR040W, YGL209W, YGL253W, YGR009C, YGR010W, YGR011W, YGR035C, YGR060W, YGR108W, YGR121C, YGR122W, YGR134W, YGR144W, YGR161C, YGR171C, YGR178C, YGR180C, YGR182C, YGR192C, YGR229C, YGR230W, YGR233C, YGR234W, YGR238C, YGR249W, YGR282C, YHL028W, YHL029C, YHL034C, YHL041W, YHL044W, YHR047C, YHR049W, YHR128W, YHR179W, YHR185C, YIL045W, YIL099W, YIL108W, YIL109C, YIL118W, YIL119C, YIL122W, YIL170W, YIL171W, YIL172C, YIR001C, YIR020C, YJL028W, YJL029C, YJL030W, YJL031C, YJL076W, YJL077C, YJL078C, YJL105W, YJL171C, YJL216C, YJL217W, YJL219W, YJL221C, YJR003C, YJR011C, YJR061W, YJR094C, YJR100C, YJR102C, YJR103W, YJR132W, YJR145C, YJR146W, YJR147W, YJR154W, YJR158W, YKL028W, YKL029C, YKL039W, YKL040C, YKL044W, YKL072W, YKL086W, YKL087C, YKL103C, YKL107W, YKL110C, YKL132C, YKL142W, YKL157W, YKL182W, YKR039W, YKR066C, YKR067W, YKR102W, YLL006W, YLL007C, YLL052C, YLL053C, YLL054C, YLL061W, YLL062C, YLR001C, YLR029C, YLR030W, YLR034C, YLR044C, YLR055C, YLR056W, YLR074C, YLR075W, YLR081W, YLR105C, YLR121C, YLR154C, YLR228C, YLR304C, YLR310C, YLR328W, YLR332W, YLR368W, YLR413W, YLR460C, YML116W, YML119W, YML120C, YML131W, YMR014W, YMR017W, YMR038C, YMR081C, YMR082C, YMR172C-A, YMR173W, YMR173W-A, YMR177W, YMR244C-A, YMR246W, YMR265C, YMR266W, YMR283C, YMR319C, YNL066W, YNL087W, YNL145W, YNL178W, YNL179C, YNL180C, YNL217W, YOL052C-A, YOL059W, YOL060C, YOL109W, YOL116W, YOL151W, YOL154W, YOL156W, YOL157C, YOL159C, YOR019W, YOR032C, YOR047C, YOR049C, YOR178C, YOR230W, YOR273C, YOR274W, YOR302W, YOR303W, YOR306C, YOR311C, YOR315W, YOR317W, YOR318C, YOR319W, YOR344C, YOR369C, YOR381W, YPL061W, YPL062W, YPL160W, YPL161C, YPL165C, YPL275W, YPL276W, YPL277C, YPL278C, YPR005C, YPR013C, YPR014C, YPR016C, YPR035W, YPR065W, YPR122W, YPR124W, YPR126C, YPR127W, YPR149W, YPR158C-C, YPR158C-D, YPR159W, YPR184W	YCR040W, YGR280C, YIL082W-A, YIL148W, YKR010C, YML116W, YOR225W, YDL064W, YFR032C-A, YGL009C, YHR143W, YLR056W, YLR062C, YLR406C, YMR194W, YNL211C, YCR013C, YDR401W, YER117W, YGR279C, YJR051W, YKR038C, YKR042W, YKR013W, YMR044W, YNR062C, YOR252W, YOR194C, YOR226C, YCR097W-A, YAL034C, YAL065C, YAL069W, YBR224W, YDL061C, YDR187C, YDR253C, YEL041W, YHR112C, YHR143W-A, YHR116W, YHR177W, YJL052W, YLR089C, YLR028C, YLR061W, YMR225C, YNL244C, YDR096W, YFR005C, YGR063C, YHR053C, YHR025W, YHR055C, YIR034C, YJR143C, YJR116W, YLR372W, YLR311C, YMR071C, YNL147W, YNL149C, YOR285W, YOR347C, YOR321W, YOR351C, YPR020W, YMR196W, YPL187W, YAR068W, YBR283C, YGL103W, YHR208W, YML056C, YML085C, YMR286W, YPL142C, YBR091C, YBR067C, YDR461W, YGL263W, YGR034W, YGR064W, YHR021C, YJR146W, YJR117W, YLR339C, YMR074C, YNL110C, YNL176C, YNL146W, YOL077W-A, YOL109W, YAR062W, YBL026W, YCL018W, YBR256C, YDL191W, YDR281C, YGL070C, YGL102C, YGR181W, YIL015W, YLR185W, YML024W, YML055W, YML084W, YPL143W, YPL145C, YER042W, YCL065W, YDR378C, YJR094W-A, YLR287C-A, YNL030W, YOR265W, YPL183W-A, YBR169C, YDL133C-A, YDL136W, YDR224C, YFR044C, YHR182W, YHR123W, YHR188C, YLR066W, YMR230W, YNL279W, YOR045W, YBR009C, YDR077W, YDR373W, YER152C, YER154W, YNR068C, YOR234C, YJR148W, YAL012W, YBR162W-A, YBR196C, YDL075W, YEL021W, YKL081W, YOR078W, YGR037C, YLR344W, YLR348C, YOL144W, YOL086C, YOR293W, YOR357C, YOR329C, YGR254W, YJL159W, YKL209C, YKL178C, YMR260C, YPL092W, YDR471W, YHR032W, YLL010C, YLR343W, YLR379W, YLR349W, YNL150W, YOL143C, YOR221C, YNR043W, YBL028C, YBR262C, YIL027C, YJL188C, YKL175W, YKL177W, YML030W, YDR086C, YER131W, YGL189C, YHR010W, YHL032C, YKR057W, YKR093W, YOR237W, YPL225W, YBR171W, YJL135W, YKL058W, YLR040C, YLR420W, YNL259C, YOR393W, YPL037C, YCL066W, YDR447C, YHR005C-A, YHL001W, YJR063W, YLR292C, YML126C, YNL066W, YOR210W, YAL022C, YDL081C, YKL120W, YLR041W, YLR043C, YML009C, YOR020C, YOR084W, YCR097W, YFL026W, YHR072W-A, YKL032C, YKL003C, YLR388W, YOL126C, YPR062W, YDR322C-A, YGL087C, YGL089C, YDL016C, YLL018C, YLR325C, YNL162W, YPL281C, YBR268W, YJR004C, YKL216W, YKL156W, YLR167W, YNL005C, YNR044W, YDR056C, YDR454C, YDR396W, YGL191W, YLR303W, YMR006C, YOR277C, YOR247W, YAL033W, YER019C-A, YGL031C, YGR148C, YHR136C, YHR141C, YJL141C, YJL079C, YPR159W, YCR028C-A, YKR094C, YLR237W, YLR302C, YNL070W, YNL045W, YOR248W, YBR210W, YBR244W, YGL032C, YGR118W, YJL136C, YLR051C, YLR421C, YMR215W, YBR090C, YFL034C-A, YFL037W, YGR027C, YJR135W-A, YKL006W, YLR332W, YOR369C, YPR074C, YCL007C, YDL184C, YIL008W, YKL196C, YLR180W, YML108W, YPL170W, YLR333C, YOL127W, YOR312C, YPR043W, YBL018C, YDL211C, YER048W-A, YGR209C, YIL069C, YKL160W, YKL195W, YLR147C, YML079W, YML081C-A, YOR182C, YOR186W, YPR176C	MIG3, PDR3, PDR8, YPR196W	"A | 0.558 0.014 0.011 0.864 0.041 0.330 0.025 0.836 0.924 0.129 0.156 
C | 0.255 0.014 0.010 0.081 0.614 0.257 0.021 0.141 0.036 0.221 0.629 
G | 0.107 0.037 0.118 0.023 0.125 0.359 0.044 0.007 0.022 0.357 0.153 
T | 0.080 0.935 0.861 0.032 0.220 0.054 0.910 0.016 0.018 0.293 0.062 
"
CRZ1	YNL027W, TCN1, HAL8	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	GTGGCTG	1.029546e-09	5.52	9.8602	9.03	"Transcription factor that activates transcription of genes involved in stress response; nuclear localization is positively regulated by calcineurin-mediated dephosphorylation
"	No Data	YMR016C, YJL053W, YBR005W, YGL166W, YMR009W, YOL014W, YOL016C, YOR220W, YPL016W, YHR053C, YHR055C, YBR287W, YLR120C, YMR314W, YMR316C-A, YMR316W, YBR093C, YBR129C, YDL002C, YER029C, YLR257W, YNL030W, YGL053W, YOR385W, YPL057C, YGL174W, YIL117C, YNL027W, YNL029C, YGR161C, YKL055C, YLR099C, YLR350W, YBL003C, YLR194C, YMR294W-A, YPL156C, YBR071W, YBR101C, YDL012C, YOR298C-A, YBR296C, YER035W, YML094W, YOR209C, YDR210W, YGR136W, YLR414C, YLR231C, YLR294C, YOL032W, YDR209C, YEL060C, YGR137W, YNL290W, YOR052C, YBR082C, YKL001C, YLL012W, YDL241W, YAL033W, YBR244W, YDR213W, YDR486C, YDL212W, YGR268C, YDR151C	STP1, SUT1	"A | 0.046 0.349 0.011 0.011 0.011 0.011 0.166 
C | 0.046 0.041 0.011 0.011 0.967 0.011 0.096 
G | 0.867 0.156 0.967 0.967 0.011 0.186 0.572 
T | 0.041 0.454 0.011 0.011 0.011 0.792 0.166 
"
CST6	YIL036W, SHF1, ACA2	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	TGACGT	0.6468761	4.77	10.331	8.27	"Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family, proposed to be a regulator of oleate responsive genes; involved in utilization of non-optimal carbon sources and chromosome stability
"	YAL015C, YAL062W, YBL018C, YBL059W, YBL095W, YBR012C, YBR012W-A, YBR012W-B, YBR013C, YBR089W, YBR109C, YBR110W, YBR167C, YBR168W, YBR185C, YBR186W, YBR229C, YBR251W, YCL065W, YCL066W, YCL067C, YCL074W, YDL034W, YDL036C, YDL044C, YDL091C, YDL092W, YDL093W, YDL094C, YDL096C, YDL114W, YDL115C, YDL146W, YDR039C, YDR042C, YDR045C, YDR067C, YDR068W, YDR084C, YDR279W, YDR282C, YDR322C-A, YDR323C, YDR370C, YDR371W, YDR372C, YDR373W, YDR393W, YDR423C, YDR478W, YDR544C, YDR545W, YEL001C, YER077C, YER189W, YER190W, YFR001W, YFR007W, YFR017C, YFR023W, YFR041C, YFR042W, YGL250W, YGL251C, YGR040W, YGR150C, YGR289C, YHL036W, YHL037C, YHR091C, YHR155W, YHR171W, YJL057C, YJR088C, YJR089W, YJR100C, YKL077W, YKL177W, YKL179C, YKR060W, YKR103W, YLR022C, YLR452C, YLR462W, YLR464W, YLR466W, YML133C, YMR065W, YMR125W, YMR200W, YMR258C, YMR283C, YMR293C, YMR294W, YNL001W, YNL002C, YNL111C, YNL126W, YOL023W, YOL115W, YOR093C, YOR094W, YOR285W, YPL044C, YPL186C, YPR081C	YBR002C, YBR004C, YBR034C, YBL090W, YBR006W, YBR036C, YCL048W, YCR010C, YCL050C, YCR012W, YCR040W, YCR014C, YCR042C, YCL055W, YCR016W, YCR044C, YDR064W, YDR034W-B, YDR070C, YDR368W, YDR370C, YDR434W, YDR372C, YDR404C, YER143W, YER116C, YER145C, YER118C, YER147C, YGL230C, YGL169W, YGL232W, YGL171W, YGL234W, YGL173C, YGL236C, YGR276C, YGR280C, YHL014C, YGR282C, YHL016C, YIL078W, YIL110W, YIL142W, YIL146C, YIL084C, YIL116W, YIL148W, YJR016C, YJR083C, YJR020W, YKR039W, YKR012C, YKR045C, YLR244C, YLR218C, YMR010W, YMR041C, YMR043W, YML116W, YNL050C, YNL083W, YNL022C, YNL085W, YOL012C, YNR061C, YOL047C, YNR063W, YOL017W, YOR191W, YOR253W, YOR255W, YOR193W, YOR225W, YOR259C, YPL205C, YPL237W, YPL207W, YPL239W, YPL209C, YPL211W, YEL073C, YNL131W, YAL004W, YAL037W, YBR187W, YBR219C, YBR158W, YBR189W, YBR221C, YBR191W, YBR162C, YBR193C, YDL096C, YDL128W, YDL130W, YDL100C, YDR188W, YDR190C, YDR194C, YDR254W, YEL012W, YEL042W, YEL014C, YEL044W, YFR032C-A, YGL039W, YGL009C, YGL041C, YGL011C, YGL013C, YGL045W, YGR121C, YGR152C, YGR095C, YGR124W, YGR156W, YHR143W, YHR174W, YHR115C, YHR144C, YHR117W, YHR146W, YHR119W, YHR148W, YHR180W, YJL051W, YJL117W, YJL087C, YKL043W, YKL074C, YKL107W, YKL078W, YKL080W, YLR056W, YLR088W, YLR027C, YLR058C, YLR090W, YLR029C, YLR060W, YLR062C, YLR432W, YLR463C, YLR404W, YLR406C, YMR160W, YMR190C, YMR222C, YMR224C, YMR166C, YMR194W, YMR226C, YNL209W, YNL273W, YOR002W, YOR033C, YOR065W, YOR067C, YOR006C, YOR377W, YPL017C, YPL049C, YOR381W, YPL019C, YPL051W, YPL021W, YPR078C, YPR110C, YPR139C, YPR080W, YBL079W, YCL061C, YDR457W, YDR507C, YEL007W, YPL064C, YBL083C, YBR001C, YBR031W, YBL087C, YBR003W, YBR005W, YCR009C, YCL051W, YCR013C, YCL054W, YCR043C, YDR067C, YDR397C, YDR429C, YDR399W, YDR369C, YDR433W, YER171W, YER117W, YER146W, YGL198W, YGL200C, YGL231C, YGR275W, YGR277C, YHL011C, YGR279C, YHL013C, YHL015W, YIL109C, YIL111W, YIL143C, YIL082W, YIL145C, YIL083C, YIL147C, YJR015W, YJR047C, YJR021C, YKR009C, YKR072C, YKR011C, YKR044W, YKR076W, YLR243W, YLR247C, YLR219W, YLR249W, YMR040W, YML113W, YMR011W, YML115C, YMR013C, YNL082W, YNL084C, YNR056C, YNR058W, YOL044W, YNR060W, YOL014W, YOL048C, YOR254C, YOR224C, YOR226C, YPL173W, YPL175W, YPL238C, YPL208W, YPL210C, YPL242C, YDR039C, YJR002W, YJR078W, YMR240C, YMR266W, YCR097W-A, YKL123W, YAL003W, YAL035C-A, YAL036C, YAL067C, YAL038W, YBR155W, YBR186W, YBR220C, YBR161W, YBR192W, YDL061C, YDL063C, YDL095W, YDL065C, YDL129W, YDL130W-A, YEL011W, YEL041W, YEL013W, YEL043W, YEL015W, YEL017C-A, YGL008C, YGL040C, YGL042C, YGL012W, YGR090W, YGR120C, YGR092W, YGR094W, YGR123C, YGR155W, YGR096W, YGR125W, YHR142W, YHR143W-A, YHR175W, YHR118C, YHR147C, YHR179W, YJL048C, YJL080C, YJL116C, YJL118W, YKL073W, YKL104C, YKL106W, YKL046C, YKL077W, YKL110C, YLR055C, YLR089C, YLR061W, YLR429W, YLR433C, YLR464W, YLR405W, YLR466W, YMR191W, YMR221C, YNL208W, YNL240C, YNL274C, YNL244C, YOR032C, YOR064C, YOR005C, YOR007C, YPL048W, YPL018W, YPL050C, YPL020C, YPR115W, YBR126C, YDR050C, YBR092C, YBR068C, YDL001W, YCR082W, YDL037C, YDR158W, YDR098C, YDR100W, YDR132C, YDR164C, YDR466W, YDR500C, YFL039C, YFR005C, YFL013W-A, YFL043C, YFL045C, YFR009W, YGR001C, YGR033C, YGR063C, YGR065C, YHR081W, YHR053C, YHR083W, YHR025W, YHR055C, YHR027C, YHR087W, YIL176C, YIR001C, YJL020C, YJR112W, YJR143C, YJR145C, YJR147W, YJR118C, YKL018W, YLL066C, YLR309C, YLR340W, YLR372W, YLR342W, YMR105C, YMR107W, YNL115C, YNL181W, YOL077C, YOL142W, YOR289W, YOR321W, YPL266W, YPL268W, YPR016C, YPR018W, YPR020W, YPR052C, YMR196W, YPL110C, YPL135W, YPL036W, YPL187W, YPL235W, YPL283C, YPR184W, YAR064W, YBL055C, YAR068W, YBL025W, YBL027W, YBL059W, YBR283C, YBR285W, YBR255W, YBR257W, YDL222C, YDL192W, YDR276C, YDR308C, YDR339C, YDR280W, YDR312W, YDR341C, YDR282C, YER024W, YER026C, YER055C, YER056C-A, YER086W, YER058W, YER087W, YGL103W, YGL135W, YGL105W, YGL137W, YGR180C, YGR244C, YGR214W, YGR184C, YGR216C, YGR248W, YGR186W, YGR250C, YHR208W, YIL016W, YIL018W, YIL020C, YIL052C, YJL145W, YJL177W, YKL172W, YKL143W, YKL207W, YLR184W, YLR186W, YML054C, YML056C, YML085C, YMR312W, YMR254C, YNL301C, YNR028W, YNL305C, YNL307C, YPL142C, YPL080C, YPL112C, YPL148C, YFL029C, YFR016C, YGR070W, YHR023W, YHR183W, YJL150W, YBR061C, YBR093C, YBR127C, YBR067C, YBR129C, YCR077C, YDR095C, YDR125C, YDR157W, YDR097C, YDR129C, YDR161W, YDR099W, YDR461W, YDR525W, YDR495C, YDR465C, YFL010C, YFL038C, YFR002W, YFL040W, YFR004W, YFL042C, YFR006W, YGR028W, YGR030C, YGR060W, YGR032W, YGR004W, YGR034W, YHR054C, YJL017W, YIL177C, YIR002C, YJR113C, YKL013C, YJR117W, YKR102W, YKR104W, YLL061W, YLL063C, YLR304C, YLR367W, YLR339C, YLR373C, YMR131C, YMR106C, YNL110C, YNL112W, YNL146W, YNL148C, YNL180C, YOL103W-B, YOL076W, YOL105C, YOL137W, YOL139C, YOL109W, YOR284W, YOR286W, YOR346W, YOR318C, YOR348C, YOR320C, YPR013C, YPR047W, YPL269W, YPR017C, YPR019W, YPR051W, YPL121C, YOR211C, YPL155C, YOR083W, YAR060C, YBL024W, YBL056W, YAR069C, YBL026W, YBL058W, YBR282W, YBR252W, YBR254C, YBR288C, YCL020W, YDL191W, YDL223C, YDL161W, YDL193W, YDL225W, YDR279W, YDR311W, YDR281C, YER023W, YER052C, YER025W, YER054C, YER056C, YER087C-A, YGL070C, YGL102C, YGL074C, YGL106W, YGL138C, YGL140C, YGR211W, YGR243W, YGR181W, YGR213C, YGR185C, YHR207C, YIL015W, YIL047C, YHR209W, YIL017C, YIL049W, YIL019W, YIL051C, YJL208C, YJL178C, YJL148W, YJL212C, YJL182C, YKL138C, YKL202W, YKL140W, YKL171W, YKL204W, YKL142W, YKL173W, YKL206C, YLR153C, YLR183C, YLR155C, YLR185W, YLR125W, YLR157C, YML022W, YML082W, YML024W, YML057W, YML086C, YML028W, YML058W, YMR251W-A, YMR313C, YMR255W, YMR287C, YMR257C, YMR289W, YNL300W, YNL332W, YNR025C, YNL302C, YOR160W, YPL109C, YPL079W, YPL143W, YPL081W, YPL113C, YPL145C, YPL083C, YGR170W, YIL055C, YHR192W, YBR038W, YBR010W, YCL057W, YCR046C, YCL059C, YCR048W, YDR012W, YDR072C, YDR074W, YDR018C, YDR408C, YDR378C, YDR410C, YDR412W, YER119C-A, YGL238W, YGL211W, YGL244W, YGR284C, YHL050C, YHR001W-A, YIL118W, YIL088C, YIL090W, YIL124W, YIL156W, YJR089W, YJR028W, YJR060W, YJR030C, YJR094W-A, YKR016W, YKR047W, YKR018C, YKR049C, YKR081C, YLR222C, YLR252W, YLR284C, YLR286C, YLR227W-A, YLR287C-A, YMR050C, YML123C, YMR052C-A, YML125C, YMR024W, YNL058C, YNL030W, YNR067C, YOL052C-A, YNR071C, YOR197W, YOR199W, YPL245W, YPL183W-A, YPL185W, YPL249C, YDR334W, YKL166C, YLR131C, YMR129W, YNL088W, YNL163C, YAL043C, YAR008W, YAL044C, YAR010C, YAR015W, YBR169C, YDL070W, YDL133C-A, YDL072C, YDL074C, YDL136W, YDR224C, YDR226W, YEL052W, YER006W, YFR040W, YGL049C, YFR044C, YGL019W, YGL021W, YGR128C, YGR160W, YGR101W, YGR103W, YGR132C, YGR161W-A, YGR105W, YGR162W, YHR123W, YHR152W, YHR127W, YHR188C, YJL121C, YJL125C, YJL063C, YKL117W, YKL056C, YKL119C, YLR064W, YLR068W, YLR100W, YLR102C, YML004C, YLR441C, YLR443W, YML008C, YMR170C, YMR173W, YMR202W, YNL215W, YNL247W, YNL281W, YNL283C, YNL221C, YNL284C-A, YOR041C, YOR073W, YOR075W, YOR045W, YOR077W, YOR047C, YOR079C, YOR385W, YPL023C, YCR093W, YDR147W, YDR310C, YBL091C, YBL092W, YBR009C, YBL094C, YBR011C, YCL056C, YCL064C, YCR051W, YDR373W, YDR379W, YER148W, YER120W, YER124C, YER154W, YGL174W, YGL239C, YGL241W, YGL180W, YGL243W, YHL049C, YGR285C, YHL021C, YIL085C, YIL117C, YIL119C, YIL151C, YIL121W, YIL153W, YIL091C, YIL123W, YIL155C, YJR027W, YJR029W, YKR048C, YKR080W, YLR251W, YLR281C, YLR223C, YLR283W, YLR285W, YLR256W-A, YMR017W, YML120C, YMR019W, YMR049C, YML124C, YMR023C, YMR052W, YNL057W, YNR064C, YOL018C, YOL020W, YOL052C, YOL022C, YOL024W, YOR260W, YOR198C, YOR202W, YOR234C, YPL181W, YPL244C, YPL246C, YPL184C, YPL216W, YPL186C, YPL218W, YPL249C-A, YBL008W, YJR148W, YKR023W, YLL008W, YML111W, YMR207C, YML100W, YAR002W, YAL012W, YAL042W, YAL016W, YBR162W-A, YBR196C, YBR166C, YBR230C, YDL069C, YDL075W, YDR225W, YDR259C, YDR261C, YER001W, YEL051W, YER003C, YFR039C, YGL014W, YGL046W, YGL016W, YGL048C, YGL018C, YGL050W, YGL020C, YGR159C, YGR161C, YHR149C, YHR181W, YHR151C, YJL088W, YJL122W, YKL081W, YKL087C, YLR095C, YLR034C, YLR065C, YLR097C, YLR437C, YML001W, YMR195W, YMR169C, YMR197C, YMR172W, YMR201C, YNL246W, YNL248C, YNL220W, YOR008C-A, YOR042W, YOR078W, YPL054W, YPL026C, YPL028W, YPL060C-A, YPR091C, YBR070C, YBR132C, YBR074W, YBR104W, YBR106W, YCR084C, YDL011C, YDR134C, YFL049W, YFL022C, YFR017C, YGR037C, YGR009C, YGR038C-B, YGR011W, YHR089C, YHR061C, YHR033W, YHR063C, YIR011C, YJL030W, YJR124C, YKL024C, YJR126C, YJR157W, YKL026C, YLL011W, YLR344W, YLR378C, YLR348C, YLR380W, YLR350W, YMR141C, YMR145C, YNL155W, YOL082W, YOL086C, YOL116W, YOL148C, YOL150C, YOR293W, YOR323C, YOR295W, YPL274W, YPR028W, YPR060C, YPR010C, YBL003C, YBL064C, YBR263W, YCL028W, YBR265W, YCL030C, YDL228C, YDL232W, YDR284C, YDR347W, YDR349C, YER036C, YER063W, YER038C, YGL079W, YGL111W, YGL083W, YGL147C, YGR254W, YGR192C, YGR194C, YHR214C-B, YIL022W, YHR214W, YHR215W, YHR217C, YIL060W, YJL153C, YJL159W, YJL191W, YKL145W, YKL149C, YKL180W, YKL151C, YLR158C, YLR130C, YLR160C, YLR192C, YLR134W, YLR164W, YLR196W, YMR318C, YMR296C, YNR002C, YNL313C, YPL090C, YPL154C, YPL092W, YFL014W, YFL031W, YJL062W, YBR069C, YBR101C, YBR103W, YBR135W, YBR075W, YBR105C, YDL040C, YCR087C-A, YDR133C, YDR167W, YDR105C, YDR170W-A, YDR471W, YFL017W-A, YFL048C, YFR014C, YGR008C, YGR038W, YGR012W, YGR072W, YHR058C, YHR088W, YHR062C, YHR064C, YIR008C, YJL029C, YKL019W, YKL021C, YJR123W, YJR156C, YLL037W, YLR002C, YLL039C, YLL010C, YLR313C, YLR347C, YLR379W, YLR349W, YMR108W, YMR079W, YMR142C, YMR083W, YOL111C, YOL143C, YOL117W, YPL273W, YPR053C, YPR025C, YPL279C, YPR059C, YPR160W, YNR043W, YAR071W, YBL059C-A, YAR075W, YBL002W, YBL032W, YCL025C, YCL027W, YCL029C, YDL229W, YDL231C, YDL201W, YDR316W-A, YDR346C, YDR289C, YDR350C, YER031C, YER090W, YER035W, YER062C, YER037W, YER064C, YGL078C, YGL110C, YGL112C, YGL114W, YGR187C, YGR251W, YGR221C, YGR253C, YGR191W, YGR193C, YHR213W, YIL053W, YIL023C, YHR214W-A, YHR216W, YIL027C, YJL184W, YJL188C, YJL190C, YJL222W, YKL175W, YKL208W, YKL177W, YKL210W, YKL148C, YKL150W, YKL181W, YKL214C, YLR129W, YLR161W, YLR133W, YML061C, YML092C, YML063W, YML094W, YMR292W, YMR321C, YNR001C, YNL312W, YNR036C, YNR038W, YPL117C, YPL123C, YER060W, YIL129C, YBR046C, YBR048W, YBR050C, YCL074W, YCR061W, YDR382W, YDR418W, YDR450W, YDR420W, YER127W, YER131W, YGL189C, YHR008C, YHR010W, YIL094C, YIL158W, YIL128W, YIL160C, YIL130W, YIL162W, YIL164C, YJR064W, YJR036C, YJR100C, YJR070C, YKR026C, YKR057W, YKR059W, YLR259C, YLR230W, YLR261C, YLR291C, YLR262C-A, YLR293C, YLR264W, YML127W, YML131W, YML133C, YNL067W, YNL069C, YNL101W, YOL064C, YOR271C, YOR209C, YOR243C, YPL252C, YPL223C, YDR345C, YER101C, YIL095W, YLR169W, YAL054C, YAR028W, YAL025C, YBR171W, YBR205W, YBR209W, YBR241C, YDL078C, YDL110C, YDL082W, YDL084W, YDR234W, YDR210W, YDR238C, YDR266C, YEL026W, YEL058W, YER009W, YFR050C, YFR052W, YGL029W, YHR190W, YHR132W-A, YHR162W, YHR196W, YJL097W, YJL069C, YJL101C, YKL058W, YKL060C, YKL092C, YKL125W, YKL127W, YLR040C, YLR044C, YLR076C, YLR110C, YLR447C, YLR449W, YML012W, YLR420W, YMR242C, YNL255C, YOR017W, YOR019W, YOR085W, YPL037C, YEL054C, YBR013C, YBR045C, YBR015C, YBR047W, YBL101W-A, YBL102W, YBR051W, YCL066W, YCR022C, YCR053W, YCR062W, YDR047W, YDR385W, YDR449C, YDR419W, YER126C, YER156C, YER187W, YER188W, YER190W, YGL245W, YGL188C, YHR005C-A, YHR007C, YGR295C, YHL029C, YHL001W, YHL031C, YIL157C, YIL127C, YIL161W, YIL099W, YJR063W, YJR069C, YKR025W, YKR056W, YKR088C, YKR092C, YLR258W, YLR229C, YLR262C, YML126C, YML128C, YMR056C, YMR058W, YNL031C, YNL064C, YNL096C, YNL066W, YNL068C, YOL057W, YOL030W, YOL061W, YOR204W, YOR268C, YOR270C, YOR240W, YOR272W, YOR210W, YOR242C, YPL220W, YPL251W, YPL222W, YPL194W, YPL226W, YJR041C, YLR084C, YMR008C, YAL018C, YAR018C, YBR202W, YBR206W, YBR238C, YDL111C, YDL141W, YDL081C, YDL143W, YDL083C, YDL145C, YDR205W, YDR209C, YER010C, YEL029C, YEL060C, YEL031W, YGL022W, YGL054C, YGL026C, YGL058W, YGL028C, YGR106C, YGR135W, YGR163W, YGR110W, YHR128W, YHR193C, YHR133C, YHR163W, YJL134W, YKL120W, YKL091C, YKL093W, YKL095W, YLR041W, YLR073C, YLR043C, YLR075W, YLR045C, YLR413W, YLR448W, YMR173W-A, YMR203W, YMR235C, YMR205C, YMR239C, YMR209C, YMR241W, YNL288W, YOR080W, YOR054C, YBR078W, YBR142W, YBR082C, YBR084C-A, YBR146W, YDL015C, YDL046W, YDL050C, YDL021W, YDL052C, YDR545W, YFL026W, YFL028C, YFL030W, YFR024C-A, YGR075C, YGR019W, YGR079W, YGR049W, YHR097C, YHR069C, YHR072W-A, YIR044C, YJL002C, YJL034W, YJL004C, YJL006C, YJL038C, YKL028W, YKL030W, YJR132W, YKL003C, YKL033W-A, YLR011W, YLL018C-A, YLR354C, YLR356W, YLR388W, YMR149W, YMR120C, YMR091C, YNL127W, YOL120C, YOL152W, YOL092W, YOL158C, YOR331C, YOR361C, YOR335C, YPR030W, YPR062W, YPR004C, YPR036W, YPR136C, YBL068W, YBL041W, YBL072C, YBL011W, YDR292C, YDR353W, YDR294C, YDR298C, YDR327W, YER043C, YER070W, YER099C, YGL121C, YGL123W, YGR260W, YGR264C, YGR234W, YHR219W, YIL036W, YJL193W, YJR001W, YJL167W, YJR007W, YKL153W, YKL186C, YLR166C, YLR168C, YLR142W, YLR172C, YML070W, YML043C, YML045W-A, YML074C, YMR270C, YNL004W, YNR041C, YPL094C, YPL096W, YPL128C, YPL098C, YGL233W, YBR139W, YBR109C, YBR143C, YBR145W, YDL014W, YDL051W, YDR111C, YDR143C, YDR174W, YDR481C, YFR018C, YFL025C, YFR024C, YGR078C, YGR020C, YHR096C, YHR068W, YHR070W, YHR100C, YIR012W, YJL001W, YJL033W, YJL003W, YKL027W, YJR129C, YKL029C, YJR131W, YJR133W, YLL014W, YLL045C, YLL018C, YLR351C, YLR355C, YLR325C, YLR357W, YMR116C, YMR146C, YMR090W, YMR121C, YNL190W, YNL128W, YNL160W, YNL162W, YNL164C, YOL089C, YOL151W, YOL121C, YOL123W, YOL125W, YOR330C, YOR304W, YOR336W, YPL281C, YPR063C, YPR033C, YPR003C, YPR035W, YBL067C, YBL038W, YBL040C, YBL042C, YBR266C, YCL031C, YBR268W, YCL035C, YBR272C, YCL001W-A, YDL175C, YDR321W, YDR322W, YDR354W, YDR295C, YDR358W, YER039C, YER067W, YER100W, YGL086W, YGL088W, YGL120C, YGL154C, YGL156W, YGR195W, YGR259C, YGR261C, YGR199W, YGR231C, YGR201C, YGR265W, YIL029C, YIL061C, YIL005W, YIL035C, YJL192C, YJL164C, YJL196C, YJL166W, YJL198W, YKL152C, YKL216W, YKL154W, YKL156W, YKL220C, YKL158W, YLR197W, YLR167W, YML038C, YML067C, YML073C, YMR297W, YMR299C, YMR303C, YNR042W, YNR013C, YNR044W, YNR015W, YNR046W, YOR178C, YPL093W, YPL157W, YPL131W, YPR182W, YBR054W, YBR056W, YBR026C, YBL111C, YBR028C, YCR002C, YCR034W, YCR072C, YDR056C, YDR454C, YDR456W, YDR394W, YDR458C, YGL193C, YGL225W, YHL004W, YHL034C, YHR016C, YHR020W, YIL134W, YIL106W, YIL140W, YJR076C, YJR046W, YKR063C, YKR065C, YKR069W, YKR101W, YLR299W, YLR270W, YLR301W, YLR242C, YMR004W, YMR006C, YNL103W, YNL044W, YNL109W, YOL039W, YOL010W, YOL041C, YOR277C, YOR215C, YOR247W, YOR251C, YPL197C, YEL027W, YAR033W, YAL060W, YAL033W, YBR179C, YBR243C, YBR181C, YBR247C, YBR185C, YBR249C, YDL086W, YDL120W, YDL124W, YDR212W, YEL034W, YEL038W, YGL031C, YGL001C, YGR172C, YGR117C, YGR148C, YGR176W, YGR119C, YGR178C, YHR138C, YHR200W, YHR170W, YHR141C, YHR204W, YJL075C, YJL077C, YJL111W, YJL143W, YKL068W, YKL103C, YLR048W, YLR080W, YLR082C, YLR114C, YLR086W, YML019W, YLR459W, YML021C, YMR186W, YMR188C, YNL263C, YOR057W, YOR089C, YOR027W, YOR059C, YOR061W, YOR063W, YOR095C, YPL007C, YPL039W, YPL070W, YPL011C, YPL074W, YPL013C, YPL045W, YBL107W-A, YCR028C-A, YCR031C, YCR005C, YCR035C, YDR087C, YDR029W, YDR033W, YDR453C, YDR393W, YDR427W, YFL002W-B, YER136W, YER165W, YFL004W, YER138W-A, YGL253W, YGL224C, YGL255W, YHL003C, YHL033C, YHR013C, YHR017W, YHL039W, YHR019C, YIL101C, YIL133C, YIL103W, YIL107C, YJR039W, YJR071W, YJR073C, YJR045C, YKR094C, YKR035C, YKR098C, YKR100C, YLR237W, YLR267W, YLR298C, YLR300W, YLR271W, YLR302C, YMR001C, YMR034C, YMR007W, YMR038C, YNL104C, YNL043C, YNL076W, YNL108C, YOL005C, YOL007C, YOL038W, YOL040C, YOL071W, YOR244W, YOR276W, YOR246C, YOR216C, YOR248W, YPL198W, YPL230W, YPL232W, YPL261C, YPL202C, YPL234C, YKL009W, YAL059W, YAL061W, YBR210W, YBR242W, YBR244W, YBR214W, YBR246W, YBR248C, YDL085W, YDL121C, YDR210W-A, YDR210W-C, YEL037C, YFR055W, YGL030W, YFR057W, YGL032C, YGL064C, YGL002W, YGR114C, YGR145W, YGR173W, YGR147C, YGR175C, YGR118W, YGR149W, YGR177C, YHR139C, YHR169W, YHR201C, YHR140W, YHR203C, YJL072C, YJL136C, YJL138C, YJL078C, YJL142C, YKL128C, YKL130C, YKL069W, YKL100C, YKL071W, YLR051C, YLR083C, YLR421C, YLR452C, YML014W, YML018C, YMR243C, YMR213W, YMR215W, YMR246W, YMR217W, YMR250W, YNL268W, YNL298W, YOR024W, YOR056C, YOR026W, YOR090C, YOR062C, YPL010W, YPL042C, YBR116C, YBR087W, YBR118W, YDL023C, YDL025C, YDL027C, YCR104W, YDL029W, YDR120C, YDR152W, YDR182W, YDR124W, YDR490C, YFL034C-A, YFR028C, YFL037W, YFR031C-A, YGR051C, YGR085C, YGR027C, YGR087C, YHR074W, YHR046C, YHR076W, YHR078W, YHR111W, YJL008C, YJL041W, YIR022W, YJL012C, YIR026C, YJL014W, YJR135W-A, YKL006W, YJR139C, YKL008C, YLL020C, YLR019W, YLL024C, YLR328W, YLR362W, YLR394W, YLR332W, YLR398C, YMR093W, YMR124W, YMR095C, YMR126C, YMR097C, YMR099C, YMR130W, YNL199C, YNL203C, YNL173C, YOL160W, YOL100W, YOR369C, YOR309C, YOR371C, YOR375C, YPR074C, YPR044C, YBL076C, YBL078C, YBL051C, YBL082C, YCL040W, YCL042W, YCL009C, YDR300C, YDR331W, YER048C, YER049W, YER080W, YER110C, YGL097W, YGR204W, YGR240C, YGR272C, YGR210C, YGR274C, YIL009W, YIL040W, YIL011W, YIL042C, YIL074C, YIL044C, YIL076W, YJR009C, YJR014W, YKL192C, YKL164C, YLR174W, YLR176C, YLR148W, YLR178C, YLR150W, YLR180W, YLR212C, YML076C, YML106W, YML050W, YML052W, YML110C, YMR276W, YMR305C, YNL010W, YMR282C, YNL325C, YNR049C, YNL327W, YNR020C, YNR022C, YNR055C, YPL102C, YPL134C, YPL106C, YPL170W, YPL172C, YBR117C, YBR149W, YBR151W, YBR089W, YBR121C, YDL022W, YDR119W, YDR485C, YFR025C, YGR024C, YGR052W, YGR026W, YGR054W, YHR104W, YHR045W, YHR047C, YJL009W, YJL044C, YKL004W, YLL019C, YLR327C, YLR359W, YLR390W-A, YLR333C, YMR123W, YMR098C, YNL134C, YNL166C, YNL136W, YNL200C, YNL140C, YOL097C, YOL127W, YOL103W, YOR338W, YOR308C, YOR310C, YOR342C, YOR312C, YOR374W, YPR005C, YPR069C, YPR039W, YPR009W, YPR041W, YPR043W, YBL046W, YBL077W, YBL048W, YBL081W, YBR280C, YCL045C, YDL185W, YDR001C, YDR299W, YDR362C, YER073W, YER102W, YER079W, YGR235C, YGR237C, YIL007C, YIL037C, YIL039W, YIL043C, YIL075C, YJL200C, YJR008W, YJR011C, YKL191W, YLR173W, YLR205C, YLR175W, YLR149C, YLR179C, YLR211C, YML075C, YML048W, YMR304W, YMR279C, YMR307W, YMR309C, YNR021W, YNR023W, YOR182C, YPL165C, YPL107W, YPL139C, YPL171C	SUT1, YER184C	"A | 0.010 0.010 0.970 0.010 0.050 0.010 
C | 0.010 0.010 0.010 0.970 0.010 0.010 
G | 0.010 0.910 0.010 0.010 0.930 0.010 
T | 0.970 0.070 0.010 0.010 0.010 0.970 
"
CUP2	YGL166W, ACE1	Pachkov et al	http://www.ncbi.nlm.nih.gov/pubmed/17130146	CAGCAAAAATG	0.1372963	12.25	15.1417	12.58	"Copper-binding transcription factor; activates transcription of the metallothionein genes CUP1-1 and CUP1-2 in response to elevated copper concentrations
"	No Data	YJR085C, YJR054W, YNL016W, YOL047C, YHR146W, YKL111C, YMR220W, YMR192W, YOR033C, YGL166W, YOL048C, YAL053W, YEL011W, YLR433C, YOR038C, YPL014W, YPL016W, YMR103C, YMR105C, YOR289W, YPL283C, YDR276C, YGL071W, YGR250C, YKL205W, YMR104C, YOL076W, YOR318C, YPL271W, YER057C, YGR183C, YIL015W, YLR183C, YPL141C, YCR021C, YDR074W, YHR001W-A, YLR252W, YOL052C-A, YPL183W-A, YDL072C, YLR033W, YOR073W, YOR043W, YOR075W, YPL160W, YDR011W, YER150W, YHL021C, YIL087C, YLR251W, YML120C, YMR023C, YNL055C, YOR228C, YJR148W, YML100W, YGR131W, YFR015C, YFR017C, YMR084W, YOR355W, YPR028W, YER038C, YGL147C, YML093W, YGR008C, YIR035C, YLR375W, YMR081C, YNL118C, YOR324C, YPR055W, YLL023C, YJL186W, YJL220W, YNR038W, YPL087W, YBR209W, YGR138C, YLR110C, YOR017W, YOR051C, YPL066W, YGL188C, YKR056W, YLR258W, YNL068C, YAR020C, YAR027W, YAL055W, YBR240C, YDL113C, YDR265W, YEL025C, YEL057C, YER008C, YEL059C-A, YER010C, YGL056C, YGL060W, YGR139W, YJL064W, YJL066C, YJL098W, YKL091C, YKL126W, YMR235C, YMR239C, YPL063W, YBR142W, YDL048C, YLL046C, YLR356W, YLR390W, YMR122C, YOL090W, YOR361C, YER072W, YHR219W, YDR513W, YLR387C, YNL160W, YOL089C, YOL119C, YOL123W, YER067W, YER044C, YBR054W, YBR060C, YJR046W, YLR297W, YMR037C, YNL103W, YOR217W, YBR183W, YHR136C, YMR216C, YDR055W, YMR001C, YMR034C, YHR135C, YJL076W, YJL110C, YJL142C, YKL096W-A, YLR049C, YLR452C, YLR427W, YMR181C, YMR211W, YMR250W, YCR099C, YDR122W, YLL026W, YNL135C, YCL040W, YER049W, YKL194C, YLR178C, YFL068W, YLR327C, YLR395C, YNL200C, YOR370C, YOR372C, YGR209C, YML081C-A, YMR277W	None	"A | 0.001 0.997 0.001 0.222 0.666 0.444 0.997 0.997 0.776 0.443 0.222 
C | 0.776 0.001 0.001 0.776 0.001 0.111 0.001 0.001 0.001 0.001 0.001 
G | 0.001 0.001 0.997 0.001 0.332 0.444 0.001 0.001 0.222 0.001 0.776 
T | 0.222 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.555 0.001 
"
CUP9	YPL177C	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	CCATACATCAC	1.552448e-05	10.81	7.80095	10.81	"Homeodomain-containing transcriptional repressor of PTR2, which encodes a major peptide transporter; imported peptides activate ubiquitin-dependent proteolysis, resulting in degradation of Cup9p and de-repression of PTR2 transcription
"	YAL064W, YBL029W, YBL043W, YBL074C, YBR291C, YBR300C, YCR024C-A, YDL027C, YDL037C, YDL129W, YDL130W, YDL245C, YDL246C, YDR042C, YDR064W, YDR077W, YDR098C, YDR143C, YDR259C, YDR343C, YDR441C, YDR442W, YEL040W, YEL047C, YEL069C, YEL070W, YER158C, YFL003C, YFR005C, YFR006W, YGL001C, YGL077C, YGL101W, YGL102C, YGL135W, YGL136C, YGR024C, YGR027C, YGR108W, YGR249W, YHL034C, YHR033W, YIL056W, YIL099W, YIL102C, YIL119C, YIL170W, YIL171W, YIL172C, YIR020C, YJL148W, YJL191W, YJL192C, YJL219W, YJL221C, YJR100C, YJR158W, YJR159W, YKL044W, YKL057C, YKR038C, YKR093W, YLR043C, YLR074C, YLR075W, YLR286C, YLR367W, YLR368W, YMR014W, YMR017W, YMR056C, YMR070W, YMR135C, YMR136W, YMR194W, YMR242C, YNL025C, YNL145W, YOL121C, YOR032C, YOR049C, YOR223W, YOR236W, YOR315W, YPL198W, YPR013C	YBR002C, YBL090W, YCR012W, YCR040W, YER112W, YER178W, YGR280C, YGR282C, YHL016C, YIL148W, YJR020W, YJR087W, YKR012C, YMR010W, YML116W, YMR046W-A, YNL081C, YOR225W, YOR257W, YOR227W, YPL239W, YPL178W, YKL122C, YBR187W, YBR162C, YDL064W, YDL128W, YDL131W, YEL046C, YFR032C-A, YGL009C, YGR121C, YGR124W, YHR143W, YHR174W, YHR115C, YLR025W, YLR056W, YLR088W, YLR058C, YLR062C, YLR432W, YLR434C, YLR406C, YMR193W, YMR194W, YNL211C, YOR002W, YOR067C, YOR006C, YOR071C, YBR001C, YBR031W, YCR013C, YDR063W, YDR397C, YER117W, YER146W, YGR279C, YJR086W, YKR042W, YKR013W, YLR275W, YLR249W, YMR015C, YNL080C, YOL011W, YOR252W, YOR192C, YOR194C, YOR226C, YOR258W, YPL177C, YCR097W-A, YAL069W, YBR220C, YDL061C, YGR122C-A, YGR157W, YHR143W-A, YHR147C, YJL052W, YJL118W, YLR089C, YLR061W, YLR435W, YMR221C, YMR193C-A, YMR225C, YNL244C, YPL048W, YOR380W, YPR138C, YCR082W, YDR096W, YDR158W, YDR160W, YGR005C, YHR081W, YHR053C, YHR025W, YHR055C, YIR034C, YJR143C, YJR116W, YJR147W, YLR340W, YLR372W, YLR374C, YMR071C, YNL147W, YNL149C, YOL140W, YOR285W, YOR287C, YOR321W, YOR351C, YPR016C, YPL270W, YPR050C, YPR020W, YPL036W, YPL187W, YAR068W, YBL027W, YBL059W, YBR283C, YBR253W, YCL017C, YDR339C, YER086W, YER030W, YGL103W, YGL077C, YGR180C, YHR208W, YIL016W, YKL137W, YKL172W, YML056C, YML085C, YML029W, YMR312W, YMR286W, YMR256C, YNL307C, YPL142C, YPL144W, YPL146C, YHR183W, YCR077C, YDR461W, YGR030C, YGR034W, YHR021C, YJR117W, YLR339C, YMR074C, YNL110C, YNL176C, YNL146W, YOL105C, YOL077W-A, YOL109W, YOR286W, YPL271W, YAR062W, YBL026W, YCL018W, YBR256C, YDL191W, YDR338C, YDR281C, YER052C, YGL070C, YGL102C, YGR181W, YGR215W, YGR185C, YIL015W, YHR211W, YIL019W, YJL148W, YKL199C, YKL169C, YLR153C, YLR185W, YLR187W, YML024W, YML055W, YML026C, YML057W, YML086C, YNL300W, YNL306W, YPL143W, YPL145C, YER042W, YDR012W, YDR072C, YDR378C, YGL242C, YIL088C, YIL090W, YJR094W-A, YLR286C, YLR287C-A, YML123C, YNL030W, YOL019W, YOR265W, YAL043C, YDL133C-A, YDL136W, YDR224C, YER002W, YHR121W, YHR123W, YHR188C, YJL121C, YJL093C, YKL053C-A, YLR066W, YLR098C, YLR068W, YLR439W, YMR230W, YNL215W, YNL279W, YNL219C, YNL283C, YOR009W, YOR011W, YOR045W, YBR009C, YDR071C, YDR077W, YDR373W, YER154W, YIL153W, YIL123W, YJR023C, YKR084C, YNL055C, YNL057W, YOL020W, YOR234C, YPL246C, YPL184C, YAL010C, YAL040C, YAL012W, YAL016W, YBR162W-A, YBR196C, YDL135C, YDL075W, YDR261C, YER005W, YJL122W, YKL081W, YLR034C, YOR014W, YOR078W, YOR384W, YOR390W, YFL017C, YGR037C, YJR151C, YLL009C, YLR344W, YLR378C, YLR348C, YNL155W, YOL144W, YOL086C, YOR293W, YOR327C, YOR357C, YPR054W, YBL003C, YGR254W, YJL159W, YKL178C, YMR260C, YNR037C, YPL124W, YHR199C, YJL062W, YDR105C, YDR139C, YDR471W, YHR032W, YIR004W, YJR121W, YLR343W, YLR379W, YMR081C, YMR112C, YNL150W, YOL143C, YPL279C, YJL130C, YLL023C, YNR043W, YBL028C, YBL030C, YBL032W, YBR262C, YGR189C, YHR214W-A, YHR216W, YIL027C, YJL188C, YJL158C, YKL175W, YKL146W, YKL177W, YML030W, YML094W, YML095C-A, YMR323W, YNL308C, YCR023C, YDR086C, YDR450W, YER131W, YGL189C, YHL026C, YHR010W, YIL162W, YKR057W, YLR262C-A, YOL058W, YOR239W, YPL221W, YPL225W, YBR171W, YDR232W, YDR234W, YGR140W, YHR190W, YKL060C, YLR040C, YLR044C, YLR420W, YNL259C, YOR081C, YOR021C, YOR085W, YPL037C, YBL098W, YCL066W, YCR053W, YDR447C, YDR385W, YDR387C, YHR005C-A, YIL127C, YJR063W, YLR262C, YLR292C, YML126C, YNL066W, YOL030W, YOL061W, YOR270C, YOR210W, YAL022C, YDL141W, YDL081C, YDL113C, YDR205W, YEL031W, YGL028C, YHR189W, YKL057C, YKL120W, YKL063C, YLR041W, YLR043C, YML009C, YMR203W, YMR205C, YOR020C, YOR084W, YBR084C-A, YCR097W, YDR510W, YFL026W, YHR072W-A, YJL036W, YKL001C, YKL003C, YKL033W-A, YLL050C, YLR354C, YLR388W, YOL122C, YOR302W, YOR304C-A, YOR305W, YPR062W, YDL208W, YDR322C-A, YDR294C, YDR357C, YER043C, YGL087C, YGL089C, YGL093W, YGR260W, YLR198C, YLR170C, YNL321W, YBR145W, YDL045W-A, YDR115W, YLL018C, YLR325C, YMR116C, YNL190W, YNL162W, YOL155C, YOR303W, YPL281C, YBR268W, YCL035C, YDL173W, YGR259C, YJL196C, YJR004C, YJL166W, YKL216W, YKL156W, YLR167W, YMR303C, YNR042W, YNR013C, YNR044W, YNL322C, YBL107C, YDR056C, YDR454C, YDR396W, YGL191W, YGL225W, YIL138C, YLR303W, YMR006C, YOR277C, YOR247W, YOR283W, YPL262W, YAL033W, YER019C-A, YER022W, YGL031C, YGR148C, YHR136C, YHR141C, YJL079C, YKL099C, YMR245W, YMR188C, YNL263C, YPL076W, YPR159W, YBR053C, YCR028C-A, YCR003W, YKR094C, YLR237W, YLR300W, YLR302C, YNL070W, YOR276W, YOR248W, YBR244W, YGL032C, YGR118W, YJL136C, YJL140W, YKL069W, YLR051C, YLR083C, YLR421C, YMR215W, YNL268W, YPL071C, YBR090C, YFL034C-A, YFL067W, YFL037W, YFR001W, YGR027C, YJR135W-A, YKL008C, YLR332W, YLR334C, YMR158C-B, YOR369C, YPR074C, YPR044C, YBL082C, YCL009C, YDL184C, YDR002W, YER048C, YIL008W, YKL164C, YKL196C, YML108W, YNR055C, YPL170W, YHR047C, YKL004W, YKL006C-A, YLR022C, YLR390W-A, YLR333C, YOL127W, YOL159C, YOR312C, YPR073C, YPR043W, YBL018C, YER048W-A, YGR209C, YIL069C, YKL160W, YLR147C, YML081C-A, YOR182C	None	"A | 0.147 0.102 0.578 0.057 0.800 0.270 0.589 0.054 0.011 0.881 0.047 
C | 0.580 0.567 0.097 0.064 0.096 0.485 0.164 0.339 0.939 0.030 0.623 
G | 0.183 0.098 0.199 0.128 0.072 0.094 0.154 0.154 0.026 0.077 0.147 
T | 0.090 0.233 0.126 0.751 0.032 0.150 0.093 0.453 0.024 0.012 0.183 
"
DAL80	YKR034W, UGA43	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	GATAA	0.03473682	6.08	7.70562	6.08	"Negative regulator of genes in multiple nitrogen degradation pathways; expression is regulated by nitrogen levels and by Gln3p; member of the GATA-binding family, forms homodimers and heterodimers with Deh1p
"	YAL025C, YBL018C, YBL050W, YBL051C, YBR041W, YBR102C, YBR103W, YCR083W, YDL049C, YDL089W, YDL090C, YDL233W, YDL234C, YDR042C, YDR113C, YDR115W, YDR127W, YDR473C, YER085C, YER086W, YGR222W, YHL042W, YHR074W, YHR182W, YIL048W, YIL085C, YIL086C, YIL087C, YIL150C, YJL157C, YJL205C-A, YJR051W, YKL070W, YKR017C, YLL011W, YLR172C, YLR173W, YLR242C, YLR243W, YLR272C, YLR273C, YLR274W, YLR363C, YLR364W, YMR178W, YNL131W, YNL188W, YNL256W, YNL257C, YNL258C, YOL023W, YOL042W, YOL043C, YOL055C, YOR093C, YOR094W, YOR151C, YOR174W, YOR209C, YOR210W, YOR280C, YOR282W, YPL020C	YDR398W, YHR146W, YPL016W, YOL110W, YBR093C, YDR281C, YGL072C, YLR183C, YMR023C, YBR166C, YLR099C, YHR031C, YLR316C, YHR215W, YLR312C, YAR071W, YIL059C, YCR024C-A, YMR026C, YNL099C, YOR209C, YOR017W, YPL001W, YPL066W, YOR333C, YDR322W, YNL318C, YHR136C, YBR182C, YHR135C, YJL142C, YCR099C, YJL047C, YJR013W, YOR124C	GAT1, GLN3, GZF3	"A | 0.012 0.964 0.012 0.964 0.964 
C | 0.012 0.012 0.012 0.012 0.012 
G | 0.964 0.012 0.012 0.012 0.012 
T | 0.012 0.012 0.964 0.012 0.012 
"
DAL81	YIR023W, UGA35	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	TATCTTATCTCC	1.8297234e-14	10.23	15.1631	13.92	"Positive regulator of genes in multiple nitrogen degradation pathways; contains DNA binding domain but does not appear to bind the dodecanucleotide sequence present in the promoter region of many genes involved in allantoin catabolism
"	YBR040W, YBR068C, YBR069C, YBR119W, YBR178W, YBR195C, YCL012W, YCL014W, YCL018W, YCL024W, YCL025C, YCR039C, YCR040W, YCR041W, YDL007W, YDL041W, YDL043C, YDL150W, YDL153C, YDL182W, YDR046C, YDR047W, YDR065W, YDR072C, YDR073W, YDR098C, YDR098C-A, YDR098C-B, YDR114C, YDR472W, YDR508C, YDR510W, YEL033W, YEL034W, YEL035C, YEL044W, YEL045C, YEL046C, YER044C-A, YFR012W, YGL090W, YGL091C, YGL188C, YGL254W, YGR055W, YGR120C, YGR282C, YHR011W, YJL024C, YJL088W, YJL210W, YJL212C, YKL118W, YKR037C, YKR038C, YKR040C, YKR042W, YKR074W, YKR093W, YLR031W, YLR062C, YLR063W, YLR094C, YLR112W, YLR127C, YLR128W, YLR170C, YLR198C, YLR266C, YLR267W, YLR303W, YLR379W, YLR384C, YLR397C, YML031W, YML039W, YML040W, YMR056C, YMR085W, YOL077W-A, YOL078W, YOL080C, YOL125W, YOL126C, YOR279C, YOR281C, YOR283W, YPL123C, YPL124W, YPL265W, YPR035W, YPR145W	YBR005W, YOL014W, YOL016C, YOR220W, YPL016W, YHR053C, YHR055C, YOR347C, YMR316W, YBR093C, YKL011C, YDR281C, YOR385W, YGR161C, YLR194C, YBR101C, YBR135W, YPL273W, YER035W, YMR321C, YIL064W, YGR136W, YGR142W, YCR060W, YNL096C, YDR209C, YGR137W, YOR052C, YGR019W, YDL241W, YBR185C, YGR173W, YJL142C, YKL036C, YNL007C	None	"A | 0.030 0.495 0.010 0.010 0.010 0.080 0.703 0.010 0.010 0.020 0.111 0.150 
C | 0.010 0.446 0.010 0.960 0.010 0.010 0.010 0.010 0.970 0.010 0.576 0.710 
G | 0.100 0.050 0.110 0.020 0.010 0.010 0.228 0.010 0.010 0.010 0.273 0.130 
T | 0.860 0.010 0.870 0.010 0.970 0.900 0.059 0.970 0.010 0.960 0.040 0.010 
"
DAL82	YNL314W	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	CGAAACTTGCGCAG	1.707048e-12	9.03	16.3696	16.05	"Positive regulator of allophanate inducible genes; binds a dodecanucleotide sequence upstream of all genes that are induced by allophanate; contains an UISALL DNA-binding, a transcriptional activation, and a coiled-coil domain
"	YAL017W, YAL018C, YAL060W, YBR002C, YBR003W, YBR052C, YBR098W, YBR100W, YBR130C, YBR131W, YBR240C, YBR280C, YCL032W, YCL033C, YCL034W, YCL035C, YCR007C, YCR009C, YCR010C, YCR011C, YCR013C, YCR014C, YCR015C, YCR016W, YDL086W, YDL087C, YDL093W, YDL096C, YDR203W, YDR243C, YDR244W, YDR306C, YDR313C, YER099C, YER100W, YFR008W, YFR026C, YFR030W, YGL181W, YGL182C, YGL227W, YGL240W, YGL241W, YGL242C, YGL245W, YGL246C, YGR216C, YGR217W, YGR234W, YGR239C, YHL022C, YHL047C, YHR036W, YHR073W, YHR118C, YHR119W, YHR139C-A, YHR140W, YIL039W, YIL136W, YIL137C, YIR027C, YIR028W, YIR030C, YJL124C, YJR057W, YJR080C, YKL075C, YKL076C, YKR078W, YLR008C, YLR009W, YLR160C, YLR181C, YLR182W, YLR291C, YLR437C, YLR438W, YML119W, YML120C, YNL119W, YNL121C, YNL138W, YNL139C, YNL140C, YNL255C, YNL259C, YOL035C, YOL037C, YOL075C, YOL076W, YOL077C, YOL087C, YOL122C, YOR021C, YPL010W, YPL011C, YPL095C, YPL207W, YPL251W, YPL253C, YPR128C, YPR129W	YDR004W, YDR064W, YDR034W-B, YDR404C, YGL236C, YIL148W, YJR048W, YJR085C, YNL052W, YOL012C, YNR061C, YAL024C, YBR189W, YLR062C, YLR461W, YNL275W, YOR004W, YBL079W, YER175C, YOR252W, YOR222W, YPL016W, YPR140W, YDR406W, YBR092C, YBR096W, YCR073W-A, YDL035C, YCR082W, YDR100W, YDR527W, YDR498C, YFL045C, YHR083W, YJR145C, YKL016C, YJR118C, YLL028W, YLL062C, YLL064C, YLR340W, YLR372W, YMR071C, YNL149C, YOL136C, YOL077C, YOL138C, YOL142W, YOR285W, YPL266W, YPR016C, YPR050C, YPR020W, YPR052C, YNR014W, YNR065C, YDL156W, YDR276C, YER024W, YER053C, YER056C-A, YGL135W, YGR182C, YGR214W, YIL018W, YJL177W, YNL301C, YPL144W, YOL077W-A, YPL271W, YPR051W, YPL089C, YBR252W, YDL187C, YDL219W, YDL221W, YDR281C, YER057C, YER087C-A, YGR217W, YIL051C, YML022W, YML058W, YNL302C, YPL081W, YIL126W, YBR042C, YCR019W, YCR020C-A, YDR016C, YDR076W, YDR018C, YDR046C, YDR078C, YDR374C, YDR438W, YDR376W, YDR378C, YER184C, YGL207W, YGL213C, YGR286C, YJR094W-A, YLR287C-A, YML123C, YMR022W, YML125C, YNL087W, YNL056W, YNL028W, YNL030W, YOR201C, YPL183W-A, YPL249C, YNL163C, YAL043C, YAL044C, YDL108W, YGL015C, YJL089W, YJL121C, YJL091C, YKL056C, YMR168C, YPL025C, YPL059W, YCR093W, YCR017C, YDR011W, YDR015C, YDR043C, YDR017C, YER185W, YGR287C, YJR090C, YOR266W, YPL218W, YPL249C-A, YAL014C, YAL045C, YER007C-A, YGR161C, YHR181W, YLR099C, YLR438W, YOR390W, YDR134C, YDR537C, YGR037C, YLR344W, YOL116W, YOL088C, YOR297C, YPR028W, YDL164C, YNL315C, YDL038C, YLL006W, YLR345W, YOL143C, YPR053C, YNL314W, YCR024C-A, YDR414C, YDR418W, YER131W, YER162C, YHR010W, YIL158W, YKR057W, YLR230W, YLR264W, YLR295C, YNL067W, YNL069C, YOL002C, YPL252C, YDR208W, YDR236C, YEL026W, YKL058W, YLR104W, YLR110C, YPL005W, YPL037C, YBR088C, YDR417C, YEL060C, YLR073C, YBR084C-A, YFR023W, YIR017C, YJL004C, YLR356W, YLR388W, YOL120C, YOL092W, YPR062W, YPR004C, YDR298C, YER072W, YLR204W, YNL323W, YPL094C, YPL098C, YBR141C, YDL049C, YDL020C, YHR036W, YHR066W, YLL012W, YLR325C, YMR116C, YNL162W, YOL121C, YPR063C, YDL205C, YDL207W, YJL160C, YNL001W, YCR004C, YCR034W, YCR072C, YDR056C, YDR454C, YGL225W, YHL036W, YJR104C, YJR074W, YKR063C, YLR268W, YLR301W, YMR002W, YMR039C, YNL075W, YOL008W, YOL039W, YOL010W, YOR277C, YOR247W, YOR281C, YOR251C, YPL197C, YPL199C, YPL262W, YEL027W, YEL034W, YER019C-A, YHR141C, YLR048W, YLR112W, YLR050C, YCR028C-A, YCR031C, YGL222C, YIL133C, YIL103W, YJR073C, YJR109C, YNL070W, YOL065C, YOL040C, YOL071W, YPL234C, YBR210W, YEL070W, YGL030W, YGL032C, YJL076W, YKL096W-A, YNL230C, YNL294C, YDL054C, YDR122W, YDR154C, YDR520C, YFR031C-A, YIR022W, YJL045W, YJR135W-A, YKL006W, YJR139C, YLR398C, YNL135C, YNL137C, YOR369C, YOR311C, YPR044C, YCL007C, YIL011W, YLR146C, YML078W, YML106W, YML052W, YNL010W, YNR053C, YPL170W, YGR050C, YLR395C, YLR333C, YMR123W, YOL101C, YPR043W, YDL247W, YER045C, YER077C, YKR005C, YML077W, YML081C-A, YNL324W, YNR048W, YNL326C	IME1, PDR1, PHD1, UME6, YER184C	"A | 0.010 0.051 0.770 0.960 0.920 0.410 0.020 0.010 0.010 0.010 0.010 0.010 0.490 0.050 
C | 0.693 0.253 0.010 0.010 0.060 0.490 0.079 0.303 0.010 0.970 0.010 0.710 0.080 0.290 
G | 0.248 0.687 0.010 0.020 0.010 0.010 0.396 0.333 0.970 0.010 0.960 0.140 0.030 0.530 
T | 0.050 0.010 0.210 0.010 0.010 0.090 0.505 0.354 0.010 0.010 0.020 0.140 0.400 0.130 
"
DIG1	YPL049C, RST1	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	AAGAATGT	6.918492e-17	8.02	9.91429	8.83	"Regulatory protein of unknown function, constitutively-expressed, involved in the regulation of mating-specific genes and the invasive growth pathway, required for MAP-kinase imposed repression, inhibits pheromone-responsive transcription
"	YAL002W, YAR009C, YAR027W, YBL004W, YBL016W, YBL017C, YBL023C, YBR083W, YBR084W, YCL019W, YCL020W, YCL022C, YCL023C, YCL027W, YCL055W, YCL056C, YCR017C, YCR026C, YCR089W, YDL127W, YDR042C, YDR085C, YDR210W-D, YDR211W, YDR240C, YDR307W, YDR316W-A, YDR316W-B, YDR386W, YDR461W, YEL012W, YEL027W, YER138C, YER159C-A, YER160C, YFL039C, YFR023W, YGL032C, YGL062W, YGL134W, YGR013W, YGR014W, YGR038C-A, YGR038C-B, YGR162W, YGR165W, YGR189C, YGR256W, YHR005C, YHR072W, YHR072W-A, YHR082C, YHR083W, YHR084W, YHR086W, YIL015W, YIL036W, YIL037C, YIL082W, YIL083C, YIL095W, YIL123W, YIL169C, YJL148W, YJL186W, YJL187C, YKL095W, YKL189W, YKR091W, YLR035C-A, YLR105C, YLR344W, YLR452C, YML124C, YMR013C, YMR014W, YMR052C-A, YMR052W, YMR053C, YMR054W, YMR065W, YMR119W, YMR119W-A, YMR197C, YMR198W, YMR232W, YNL032W, YNL034W, YNL043C, YNL145W, YNL279W, YNL280C, YNR028W, YOL103W, YOR086C, YOR236W, YOR343C, YPL130W, YPL156C, YPL192C, YPL198W, YPL257W-A, YPL257W-B, YPR002C-A, YPR036W, YPR060C, YPR135W, YPR158W-A, YPR158W-B, YPR198W	YCL055W, YLR216C, YOL045W, YMR226C, YPL049C, YNL078W, YMR189W, YOR066W, YPL016W, YPL048W, YKL016C, YOL104C, YAR064W, YAR068W, YDR339C, YER028C, YLR154C, YBR093C, YBR129C, YDR461W, YDR530C, YMR072W, YNL146W, YOL139C, YOL109W, YOR086C, YER029C, YGL106W, YIL015W, YBR010W, YHR005C, YJR060W, YML119W, YNL058C, YNL030W, YOR203W, YBR009C, YLR285W, YNL057W, YOR202W, YDL075W, YDR225W, YMR171C, YOR074C, YBR132C, YJR153W, YPR060C, YBL003C, YHR214W, YHR215W, YLR192C, YMR260C, YMR294W-A, YPL156C, YGR040W, YMR112C, YOL149W, YOR298C-A, YPL273W, YAR071W, YCL027W, YHR214W-A, YML063W, YML094W, YML095C-A, YMR321C, YNL312W, YPL117C, YPR199C, YKR093W, YNL065W, YLR231C, YLR292C, YLR294C, YNL031C, YOL032W, YDR209C, YGR137W, YOR052C, YBR082C, YFL026W, YGR019W, YGR234W, YMR304C-A, YBR083W, YDR481C, YFL027C, YBL042C, YGR195W, YNR044W, YPL129W, YHR018C, YNL107W, YNL109W, YMR034C, YNL108C, YOR212W, YGL032C, YHR201C, YLR079W, YLR049C, YLR452C, YNL266W, YPL038W, YPL071C, YBR087W, YBR090C, YCR099C, YDR486C, YDR524C, YGR085C, YNL205C, YIL044C, YIL076W, YLR210W, YMR305C, YGR024C, YOL159C, YOL133W, YOR342C, YIL009C-A	None	"A | 0.505 0.590 0.020 0.960 0.970 0.010 0.010 0.010 
C | 0.010 0.080 0.010 0.020 0.010 0.010 0.010 0.416 
G | 0.426 0.320 0.960 0.010 0.010 0.010 0.830 0.079 
T | 0.059 0.010 0.010 0.010 0.010 0.970 0.150 0.495 
"
DOT6	YER088C, PBF2	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	ACCTCATCGC	0.0001402672	6.04	12.5946	12.03	"Protein involved in rRNA and ribosome biogenesis; binds polymerase A and C motif; subunit of the RPD3L histone deacetylase complex; similar to Tod6p; has chromatin specific SANT domain; involved in telomeric gene silencing and filamentation
"	YDL146W, YER044C-A, YFR007W, YMR056C	YDR036C, YJR083C, YHR146W, YMR191W, YPL016W, YJR112W, YOL136C, YAR068W, YNL337W, YBR129C, YNL146W, YDR309C, YDR313C, YER029C, YKL206C, YOR229W, YGR134W, YMR023C, YNR066C, YLR099C, YML007W, YMR171C, YMR145C, YHR214W, YNL309W, YPL156C, YBR135W, YNL152W, YCL025C, YPR199C, YGL062W, YNL065W, YNR077C, YNL289W, YDR019C, YAL018C, YMR175W, YGR049W, YJR130C, YLL050C, YLR015W, YMR151W, YPR066W, YJL167W, YMR298W, YIR016W, YOL155C, YHR018C, YLR297W, YGR146C, YLR428C, YIL169C, YLR265C, YLR269C, YMR034C, YOR212W, YBR244W, YDL117W, YLR049C, YNL264C, YDR122W, YHR074W, YNR018W, YJR011C	EDS1, STB3, TOD6	"A | 0.515 0.080 0.030 0.010 0.010 0.950 0.010 0.010 0.040 0.220 
C | 0.059 0.420 0.760 0.051 0.970 0.010 0.010 0.950 0.010 0.580 
G | 0.139 0.390 0.200 0.081 0.010 0.010 0.030 0.010 0.871 0.180 
T | 0.287 0.110 0.010 0.859 0.010 0.030 0.950 0.030 0.079 0.020 
"
ECM22	YLR228C	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	CCGGGTGGCCGGA	0.5251944	7.98	15.7113	15.97	"Sterol regulatory element binding protein, regulates transcription of sterol biosynthetic genes; contains Zn[2]-Cys[6] binuclear cluster; homologous to Upc2p; relocates from intracellular membranes to perinuclear foci on sterol depletion
"	YAL008W, YBR260C, YBR261C, YBR263W, YFR050C, YPL185W	YDR432W, YDR188W, YLR056W, YIL111W, YKR038C, YNL017C, YGL012W, YDR098C, YIR030C, YNL143C, YMR314W, YLL059C, YMR072W, YLR100W, YOL053W, YJR101W, YEL023C, YKL055C, YLR101C, YMR227C, YOR072W, YPR148C, YLR164W, YIR037W, YBR296C, YJL222W, YIL096C, YLR228C, YMR030W, YFR048W, YNL094W, YPL063W, YMR272C, YMR146C, YMR119W-A, YOL153C, YER044C, YER100W, YLR165C, YMR325W, YER091C, YBR024W, YCR006C, YIL172C, YMR033W, YAR047C, YBR185C, YGL255W, YAL026C, YAL058C-A, YAR031W, YAL059W, YBR178W, YDL087C, YDR267C, YDR213W, YML014W, YDR182W, YGR085C, YHR046C, YHR107C, YMR154C, YNL203C, YOL132W, YBR151W, YBR089W, YDR121W, YGR024C, YGR267C	None	"A | 0.059 0.010 0.010 0.040 0.242 0.140 0.228 0.230 0.350 0.020 0.010 0.020 0.920 
C | 0.525 0.780 0.030 0.010 0.020 0.260 0.297 0.080 0.420 0.930 0.040 0.020 0.010 
G | 0.129 0.200 0.949 0.940 0.717 0.160 0.347 0.420 0.110 0.010 0.940 0.950 0.050 
T | 0.287 0.010 0.010 0.010 0.020 0.440 0.129 0.270 0.120 0.040 0.010 0.010 0.020 
"
ECM23	YPL021W, SRD2	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	AGATC		4.63	6.65032	6.17	"Non-essential protein of unconfirmed function; affects pre-rRNA processing, may act as a negative regulator of the transcription of genes involved in pseudohyphal growth; homologous to Srd1p
"	No Data	No Data	None	"A | 0.720 0.100 0.970 0.030 0.010 
C | 0.110 0.020 0.010 0.010 0.890 
G | 0.100 0.860 0.010 0.010 0.030 
T | 0.070 0.020 0.010 0.950 0.070 
"
EDS1	YBR033W	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	GGAAAAA	0.02798364	7.79	9.01658	7.76	"Putative zinc cluster protein; YBR033W is not an essential gene
"	YBL068W, YBL070C, YBR109C, YBR110W, YBR185C, YBR186W, YCL002C, YCL006C, YCL007C, YCL008C, YCL009C, YCL010C, YCR002C, YCR004C, YCR005C, YCR006C, YCR008W, YCR012W, YCR023C, YDL044C, YDL092W, YDL094C, YDL108W, YDL109C, YDR056C, YDR057W, YEL002C, YEL015W, YEL016C, YER060W, YER183C, YFR023W, YGL133W, YGR066C, YGR100W, YJL037W, YJL038C, YJR012C, YJR013W, YJR041C, YJR042W, YJR098C, YJR099W, YJR132W, YJR154W, YKL026C, YKL061W, YKL072W, YKL128C, YKL167C, YKL177W, YKL179C, YLL035W, YLL036C, YLL038C, YLR199C, YLR200W, YLR412W, YML065W, YML066C, YMR126C, YMR187C, YMR200W, YMR267W, YMR283C, YNL259C, YOR058C, YOR059C, YOR128C, YOR148C, YOR256C, YOR257W, YOR353C, YPL118W, YPL119C, YPL150W, YPL151C, YPL185W, YPL238C, YPL258C, YPR118W	No Data	DOT6, HSF1, RGT1, STB3, TOD6	"A | 0.010 0.010 0.970 0.743 0.475 0.970 0.830 
C | 0.010 0.010 0.010 0.010 0.238 0.010 0.010 
G | 0.970 0.970 0.010 0.010 0.099 0.010 0.010 
T | 0.010 0.010 0.010 0.238 0.188 0.010 0.150 
"
ERT1	YBR239C	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	CCGGAAC	0.0009950707	5.71	10.6467	9.51	"Transcriptional regulator of nonfermentable carbon utilization; GFP-fusion protein localizes to cytoplasm, nucleus; null mutation affects periodicity of transcriptional and metabolic oscillation; plays role in restricting Ty1 transposition
"	No Data	No Data	None	"A | 0.086 0.013 0.010 0.014 0.958 0.955 0.048 
C | 0.494 0.963 0.011 0.010 0.011 0.012 0.644 
G | 0.069 0.014 0.969 0.967 0.015 0.021 0.046 
T | 0.351 0.010 0.010 0.010 0.017 0.012 0.263 
"
FHL1	YPR104C, SPP42	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	GACGCAAA	2.4435615e-10	4.92	10.956	9.8	"Regulator of ribosomal protein transcription; has forkhead associated domain that binds phosphorylated proteins; also has forkhead DNA-binding domain but does not bind DNA in vitro; suppresses RNA pol III and splicing factor prp4 mutants
"	YAL022C, YBL072C, YBL087C, YBL092W, YBL093C, YBR012W-A, YBR012W-B, YBR084C-A, YBR085W, YBR116C, YBR117C, YBR118W, YBR126C, YBR181C, YBR184W, YBR188C, YBR189W, YBR190W, YBR191W, YDL060W, YDL061C, YDL075W, YDL076C, YDL082W, YDL083C, YDL130W, YDL133W, YDL136W, YDL183C, YDL184C, YDL191W, YDR024W, YDR025W, YDR064W, YDR159W, YDR384C, YDR385W, YDR418W, YDR447C, YDR448W, YDR449C, YDR450W, YDR470C, YDR471W, YDR500C, YDR501W, YEL008W, YEL009C, YEL054C, YER056C-A, YER074W, YER101C, YER102W, YER116C, YER117W, YER130C, YER131W, YFL034W, YFR031C-A, YGL030W, YGL031C, YGL100W, YGL103W, YGL104C, YGL123W, YGL124C, YGL134W, YGL135W, YGL136C, YGL147C, YGL188C, YGL189C, YGR027C, YGR033C, YGR034W, YGR084C, YGR085C, YGR117C, YGR118W, YGR148C, YGR149W, YGR213C, YGR214W, YHL001W, YHL015W, YHL016C, YHL033C, YHR021C, YHR021W-A, YHR141C, YHR142W, YHR203C, YHR204W, YIL018W, YIL069C, YIL133C, YIL148W, YIL149C, YJL134W, YJL135W, YJL136C, YJL177W, YJL178C, YJL189W, YJL190C, YJL191W, YJL192C, YJR123W, YJR145C, YJR146W, YJR147W, YKL006C-A, YKL006W, YKL156W, YKL180W, YKR057W, YKR094C, YKR095W, YLL043W, YLL045C, YLR029C, YLR030W, YLR047C, YLR048W, YLR061W, YLR074C, YLR075W, YLR149C, YLR150W, YLR166C, YLR167W, YLR183C, YLR184W, YLR185W, YLR264W, YLR287C-A, YLR325C, YLR326W, YLR333C, YLR340W, YLR344W, YLR367W, YLR387C, YLR388W, YLR406C, YLR407W, YLR441C, YLR447C, YLR448W, YLR452C, YML024W, YML025C, YML026C, YML063W, YML064C, YML073C, YMR013C, YMR116C, YMR142C, YMR143W, YMR194W, YMR229C, YMR230W, YMR242C, YNL067W, YNL068C, YNL069C, YNL096C, YNL162W, YNL163C, YNL178W, YNL302C, YOL039W, YOL040C, YOL120C, YOL121C, YOL127W, YOL128C, YOR095C, YOR096W, YOR161C, YOR182C, YOR183W, YOR234C, YOR236W, YOR292C, YOR293W, YOR312C, YOR354C, YOR355W, YOR369C, YPL079W, YPL080C, YPL081W, YPL082C, YPL090C, YPL131W, YPL143W, YPL199C, YPL220W, YPR042C, YPR043W, YPR080W, YPR102C, YPR103W, YPR131C, YPR132W	No Data	AFT2, RAP1, SFP1	"A | 0.050 0.929 0.010 0.010 0.010 0.900 0.650 0.505 
C | 0.099 0.010 0.970 0.010 0.970 0.010 0.210 0.089 
G | 0.832 0.020 0.010 0.930 0.010 0.070 0.050 0.040 
T | 0.020 0.040 0.010 0.050 0.010 0.020 0.090 0.366 
"
FKH1	YIL131C	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	GTAAACAAG	1.748643e-38	7.12	9.31672	9.63	"Forkhead family transcription factor with a minor role in the expression of G2/M phase genes; negatively regulates transcriptional elongation; positive role in chromatin silencing at HML and HMR; regulates donor preference during switching
"	YAR014C, YAR015W, YAR070C, YAR071W, YBL056W, YBL057C, YBL081W, YBL082C, YBL083C, YBL097W, YBR009C, YBR010W, YBR029C, YBR030W, YBR070C, YBR071W, YBR077C, YBR078W, YBR104W, YBR109C, YBR110W, YBR138C, YBR139W, YBR158W, YBR163W, YCL027W, YCL063W, YCL064C, YCR025C, YCR075C, YCR077C, YCR079W, YCR089W, YCR092C, YCR093W, YDL017W, YDL018C, YDL049C, YDL084W, YDL230W, YDL231C, YDL240W, YDR003W, YDR027C, YDR084C, YDR085C, YDR107C, YDR108W, YDR113C, YDR115W, YDR179C, YDR179W-A, YDR259C, YDR263C, YDR284C, YDR285W, YDR324C, YDR325W, YDR331W, YDR370C, YDR371W, YDR378C, YDR379W, YDR451C, YDR452W, YDR488C, YDR489W, YDR500C, YDR501W, YDR538W, YEL015W, YEL016C, YEL017C-A, YEL017W, YER031C, YER032W, YER046W, YER064C, YER070W, YER071C, YER072W, YER087W, YER094C, YER095W, YER122C, YER123W, YER124C, YER125W, YFL021W, YFL022C, YFL037W, YFL038C, YFR003C, YFR004W, YFR017C, YFR018C, YFR019W, YFR023W, YFR044C, YFR045W, YFR051C, YFR052W, YGL028C, YGL073W, YGL075C, YGL092W, YGL116W, YGL256W, YGL257C, YGR037C, YGR038W, YGR041W, YGR050C, YGR092W, YGR098C, YGR099W, YGR107W, YGR168C, YGR171C, YGR188C, YGR268C, YGR270W, YHL024W, YHR049W, YHR060W, YHR084W, YHR086W, YHR090C, YHR094C, YHR095W, YHR101C, YHR102W, YHR103W, YHR117W, YHR118C, YHR119W, YHR143W, YHR183W, YHR199C, YHR200W, YIL015W, YIL059C, YIL076W, YIL077C, YIL158W, YJL078C, YJL100W, YJL101C, YJL102W, YJL103C, YJL105W, YJL189W, YJL190C, YJL210W, YJL212C, YJR010C-A, YJR091C, YJR092W, YJR094C, YJR111C, YJR112W, YKL001C, YKL063C, YKL069W, YKL096W-A, YKL097C, YKL157W, YKL170W, YKL195W, YKL196C, YKL217W, YKR011C, YKR013W, YKR014C, YKR054C, YKR055W, YKR059W, YKR093W, YLR011W, YLR092W, YLR113W, YLR114C, YLR115W, YLR131C, YLR209C, YLR210W, YLR257W, YLR272C, YLR286C, YLR300W, YLR353W, YLR390W-A, YLR399C, YLR400W, YLR406C, YLR407W, YLR408C, YML063W, YML064C, YML100W, YML101C, YML102C-A, YML104C, YMR076C, YMR078C, YMR079W, YMR086W, YMR117C, YMR144W, YMR176W, YMR183C, YMR184W, YMR197C, YMR198W, YMR199W, YMR215W, YMR232W, YMR261C, YMR262W, YMR264W, YMR304C-A, YMR305C, YMR306W, YNL091W, YNL093W, YNL100W, YNL103W, YNL104C, YNL138W, YNL139C, YNL140C, YNL145W, YNL174W, YNL176C, YNL212W, YNL213C, YNL218W, YNL219C, YNL272C, YNR046W, YOL023W, YOL030W, YOL031C, YOL113W, YOL114C, YOL165C, YOR095C, YOR096W, YOR098C, YOR099W, YOR239W, YOR240W, YOR309C, YOR310C, YOR312C, YOR315W, YOR357C, YOR358W, YPL024W, YPL025C, YPL032C, YPL048W, YPL049C, YPL116W, YPL117C, YPL139C, YPL140C, YPL141C, YPL155C, YPL179W, YPL226W, YPL227C, YPR009W, YPR013C, YPR033C, YPR034W, YPR035W, YPR045C, YPR046W, YPR075C, YPR104C, YPR119W, YPR195C, YPR204W	YAL034W-A, YHR146W, YMR192W, YOR038C, YOR231W, YOR043W, YER124C, YKL219W, YHR215W, YPL122C, YDL040C, YFL050C, YGL112C, YNR038W, YDL046W, YPR001W, YDR298C, YPR035W, YNR042W, YMR034C, YNL043C, YHR135C, YLR427W, YMR215W, YOR094W, YBL051C, YOR370C	MBP1, MCM1, NDD1, STB1, SWI4, SWI6	"A | 0.130 0.040 0.740 0.830 0.970 0.010 0.890 0.550 0.200 
C | 0.010 0.030 0.240 0.150 0.010 0.802 0.040 0.100 0.170 
G | 0.850 0.030 0.010 0.010 0.010 0.010 0.060 0.120 0.540 
T | 0.010 0.900 0.010 0.010 0.010 0.178 0.010 0.230 0.090 
"
FKH2	YNL068C	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	GTAAACA	5.999445e-21	8.78	10.9509	8.78	"Forkhead family transcription factor with a major role in the expression of G2/M phase genes; positively regulates transcriptional elongation; negative role in chromatin silencing at HML and HMR; substrate of the Cdc28p/Clb5p kinase
"	YAL024C, YAL028W, YAL029C, YAL053W, YAL054C, YAR018C, YBL032W, YBL033C, YBL081W, YBL082C, YBL083C, YBL097W, YBR009C, YBR010W, YBR037C, YBR038W, YBR049C, YBR051W, YBR065C, YBR077C, YBR078W, YBR092C, YBR133C, YBR135W, YBR138C, YBR139W, YBR158W, YCL059C, YCL063W, YCL064C, YCR024C-A, YCR075C, YDL017W, YDL018C, YDL173W, YDL174C, YDL215C, YDL224C, YDR033W, YDR113C, YDR115W, YDR146C, YDR147W, YDR148C, YDR150W, YDR259C, YDR263C, YDR312W, YDR313C, YDR324C, YDR325W, YDR451C, YDR452W, YDR500C, YDR501W, YER070W, YER078C, YER079W, YER094C, YER095W, YER124C, YER125W, YER189W, YER190W, YFL021W, YFL022C, YFR017C, YFR023W, YGL007W, YGL008C, YGL021W, YGL028C, YGL114W, YGL116W, YGL162W, YGL183C, YGL256W, YGL257C, YGR050C, YGR092W, YGR098C, YGR099W, YGR184C, YGR229C, YGR230W, YHL023C, YHL024W, YHR001W, YHR031C, YHR032W, YHR061C, YHR143W, YHR151C, YHR152W, YIL123W, YIL130W, YIL131C, YIL158W, YIL169C, YIL173W, YJL036W, YJL051W, YJL078C, YJL079C, YJL112W, YJL158C, YJR091C, YJR092W, YJR109C, YJR110W, YJR127C, YJR145C, YJR146W, YJR147W, YKL069W, YKL096W, YKL096W-A, YKL097C, YKR040C, YKR042W, YKR054C, YKR055W, YKR059W, YKR093W, YLL016W, YLL063C, YLR044C, YLR084C, YLR103C, YLR104W, YLR105C, YLR131C, YLR154C, YLR189C, YLR190W, YLR272C, YLR286C, YLR287C-A, YLR300W, YLR390W-A, YLR399C, YLR400W, YLR437C, YLR438W, YLR439W, YML035C, YML050W, YML052W, YML053C, YML057W, YML063W, YML064C, YML068W, YML111W, YML116W, YML124C, YML125C, YMR076C, YMR105C, YMR117C, YMR144W, YMR145C, YMR163C, YMR166C, YMR167W, YMR183C, YMR184W, YMR197C, YMR198W, YMR199W, YMR204C, YMR215W, YNL040W, YNL041C, YNL046W, YNL047C, YNL056W, YNL058C, YNL145W, YNL170W, YNL172W, YNL173C, YNL174W, YNL176C, YNL196C, YNL218W, YNL219C, YOL023W, YOR095C, YOR096W, YOR138C, YOR140W, YOR236W, YOR246C, YOR247W, YOR248W, YOR312C, YOR315W, YOR316C, YOR369C, YOR372C, YOR373W, YPL024W, YPL025C, YPL111W, YPL116W, YPL117C, YPL140C, YPL141C, YPL142C, YPL155C, YPL198W, YPR035W, YPR119W, YPR149W, YPR184W	YMR109W, YGR093W, YMR220W, YMR192W, YCR009C, YLR243W, YPL236C, YAL036C, YDL063C, YKL079W, YKL110C, YLR433C, YLR435W, YGR033C, YMR101C, YOL077C, YPL266W, YDR339C, YDR280W, YMR314W, YMR290C, YPL084W, YJL050W, YBR129C, YNL112W, YOL076W, YOL139C, YOR344C, YOR290C, YER029C, YJL208C, YLR183C, YMR289W, YPL215W, YGR160W, YGR134W, YMR202W, YNL283C, YOR043W, YBR009C, YER148W, YMR049C, YOR198C, YOR232W, YJR148W, YLL008W, YBR166C, YGR159C, YJL124C, YKL087C, YLR437C, YNL248C, YOR008C-A, YOR074C, YOR323C, YPR060C, YGL111W, YLR196W, YML093W, YPL086C, YPL122C, YKL021C, YLL037W, YMR140W, YMR142C, YNL182C, YNL120C, YNL124W, YOL115W, YOL149W, YOR294W, YOR354C, YPL273W, YPR023C, YPR055W, YPR025C, YPR057W, YNL039W, YDL201W, YGL078C, YGR253C, YKL144C, YKL212W, YLR129W, YLR163C, YLR195C, YML035C, YML063W, YML094W, YMR290W-A, YMR321C, YNL308C, YNR038W, YKR030W, YOR209C, YLR074C, YNL289W, YOR051C, YOR021C, YPL066W, YER156C, YKR056W, YLR260W, YMR027W, YML130C, YNL068C, YNL100W, YOR272W, YJR041C, YDL143W, YHR132C, YMR173W-A, YMR239C, YBR142W, YGR079W, YOR300W, YOR361C, YER072W, YJL167W, YLR140W, YNR012W, YPL098C, YPL130W, YPL162C, YDR481C, YFL054C, YMR146C, YNL160W, YNL132W, YCL031C, YDR322W, YPL159C, YHL034C, YMR033W, YNL046W, YOL070C, YGR117C, YPL070W, YGL255W, YMR001C, YPL259C, YPL202C, YKL009W, YBR216C, YDL085W, YDL117W, YEL037C, YGR145W, YHR137W, YNL232W, YNL264C, YNL234W, YPL044C, YMR093W, YNL141W, YOR343C, YIL011W, YML052W, YGR024C, YJL044C, YGR267C, YPL169C	HCM1, MBP1, MCM1, NDD1, STB1, SWI4	"A | 0.130 0.010 0.970 0.970 0.970 0.010 0.970 
C | 0.010 0.010 0.010 0.010 0.010 0.970 0.010 
G | 0.850 0.010 0.010 0.010 0.010 0.010 0.010 
T | 0.010 0.970 0.010 0.010 0.010 0.010 0.010 
"
FZF1	YGL254W, SUL1, RSU1, NRC299	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	CTATCA	0.6524308	7.8	10.1048	7.8	"Transcription factor involved in sulfite metabolism, sole identified regulatory target is SSU1, overexpression suppresses sulfite-sensitivity of many unrelated mutants due to hyperactivation of SSU1, contains five zinc fingers
"	YAL017W, YAL018C, YAL022C, YBL001C, YBR012C, YBR013C, YBR040W, YBR154C, YBR155W, YBR160W, YBR178W, YBR188C, YBR189W, YCL039W, YCL041C, YCL043C, YDL045W-A, YDL089W, YDL090C, YDL104C, YDL108W, YDL109C, YDL202W, YDL203C, YDL206W, YDR042C, YDR064W, YDR098C, YDR179C, YDR179W-A, YDR245W, YDR318W, YDR319C, YDR468C, YDR469W, YDR484W, YDR526C, YEL001C, YEL030W, YER049W, YER083C, YFR017C, YGL202W, YGR089W, YGR128C, YGR129W, YGR156W, YGR218W, YHR085W, YHR089C, YHR138C, YIL147C, YIR023W, YJL148W, YJR011C, YJR044C, YJR100C, YLR061W, YLR076C, YLR077W, YLR105C, YLR229C, YLR277C, YLR367W, YLR368W, YLR409C, YLR410W, YMR125W, YMR131C, YMR218C, YMR219W, YMR227C, YMR228W, YMR238W, YMR257C, YMR270C, YNL146W, YNR018W, YOR004W, YOR070C, YOR109W, YOR110W, YOR138C, YOR140W, YOR141C, YOR142W, YOR273C, YOR274W, YPL018W, YPL019C, YPL034W, YPL123C, YPL179W, YPL216W, YPL217C, YPL251W, YPL253C	YIL082W-A, YHR146W, YMR220W, YBR093C, YBR129C, YER029C, YOR229W, YOR073W, YOR075W, YGL212W, YNL090W, YOR074C, YMR145C, YPL092W, YPL156C, YMR144W, YNL154C, YOL149W, YNL065W, YOL029C, YNL289W, YGL254W, YLR297W, YOR029W, YMR034C, YBR244W, YLR049C, YDR122W, YOL101C	SPT23	"A | 0.010 0.010 0.970 0.010 0.010 0.970 
C | 0.970 0.010 0.010 0.010 0.970 0.010 
G | 0.010 0.010 0.010 0.010 0.010 0.010 
T | 0.010 0.970 0.010 0.970 0.010 0.010 
"
GAL4	YPL248C, GAL81	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	CGGACTACACTGCCCCGA	3.46557e-27	13.01	19.1092	19.66	"DNA-binding transcription factor required for the activation of the GAL genes in response to galactose; repressed by Gal80p and activated by Gal3p
"	YAL030W, YAL031C, YAL062W, YBL059W, YBL109W, YBL111C, YBL112C, YBL113C, YBR018C, YBR019C, YBR020W, YBR057C, YBR086C, YBR087W, YBR102C, YBR103W, YBR166C, YCR105W, YDL206W, YDL237W, YDL238C, YDR008C, YDR009W, YDR212W, YDR245W, YDR252W, YDR415C, YDR416W, YDR520C, YDR543C, YDR544C, YDR545W, YER189W, YER190W, YFR057W, YGL134W, YGR073C, YGR075C, YGR166W, YGR296W, YHR091C, YIL085C, YIL086C, YIL087C, YJR044C, YLL065W, YLR081W, YLR082C, YLR397C, YLR442C, YLR443W, YML051W, YMR086C-A, YMR087W, YMR135W-A, YMR257C, YMR259C, YNL337W, YNL338W, YNL339C, YOL042W, YOL043C, YOR030W, YOR350C, YPL034W, YPL122C, YPL251W, YPL253C	YCR012W, YCR040W, YDR366C, YER178W, YGR280C, YGR282C, YIL148W, YJR020W, YKR012C, YMR010W, YML116W, YMR014W, YMR046W-A, YOR225W, YOR257W, YPL239W, YKL122C, YBR187W, YBR221C, YBR162C, YDL064W, YDL128W, YDL131W, YDR188W, YDR192C, YEL042W, YEL046C, YFR032C-A, YGL009C, YGR121C, YGR124W, YHR143W, YHR174W, YHR115C, YLR025W, YLR056W, YLR027C, YLR058C, YLR060W, YLR062C, YLR432W, YLR406C, YMR194W, YNL239W, YNL209W, YNL211C, YNL277W, YOR002W, YOR067C, YOR008C, YOR071C, YPL015C, YPL049C, YBL083C, YBR001C, YBR031W, YBL087C, YCR013C, YDR034C-A, YDR063W, YDR397C, YER117W, YER146W, YGR275W, YGR279C, YIL113W, YKR042W, YKR013W, YMR011W, YML115C, YMR015C, YNL049C, YNL080C, YOR190W, YOR252W, YOR192C, YOR226C, YPL179W, YCR097W-A, YAL069W, YBR220C, YBR222C, YDL061C, YDR187C, YGL012W, YGR122C-A, YGR155W, YGR096W, YHR112C, YHR142W, YHR143W-A, YHR145C, YJL118W, YLR089C, YLR028C, YLR030W, YLR061W, YMR221C, YMR193C-A, YNL244C, YOR066W, YPL048W, YOR380W, YOR382W, YCR082W, YDR096W, YDR158W, YDR160W, YDR529C, YDR500C, YFR005C, YGR063C, YHR081W, YHR053C, YHR025W, YHR055C, YIR034C, YJR143C, YJR116W, YLR340W, YLR372W, YLR374C, YMR071C, YNL147W, YNL149C, YOL136C, YOR285W, YOR287C, YOR317W, YOR321W, YOR351C, YPR020W, YPL006W, YPL036W, YPL187W, YAR064W, YAR068W, YBL059W, YBR283C, YBR253W, YCL017C, YER086W, YGL103W, YGL077C, YGR180C, YHR208W, YIL016W, YHR210C, YIL052C, YML023C, YML056C, YML085C, YML029W, YMR312W, YMR286W, YMR256C, YNR026C, YNR030W, YNL307C, YNR032C-A, YPL142C, YPL080C, YHR183W, YBR067C, YDR461W, YFR006W, YGR034W, YGR064W, YHR021C, YJL017W, YJR146W, YJR117W, YKR106W, YLR339C, YMR074C, YNL110C, YNL176C, YNL114C, YNL146W, YNL116W, YOL105C, YOL137W, YOL077W-A, YOL109W, YPR013C, YPL271W, YNL251C, YNL287W, YBL026W, YCL018W, YDL191W, YDR309C, YDR338C, YDR340W, YDR281C, YER052C, YER025W, YER056C, YGL102C, YGR181W, YGR185C, YIL015W, YJL178C, YLR153C, YLR185W, YML024W, YML055W, YML084W, YML026C, YML086C, YNL302C, YPL143W, YPL145C, YCR048W, YDR012W, YDR378C, YIL088C, YIL090W, YJR094W-A, YLR286C, YLR287C-A, YML123C, YNL030W, YOL019W, YOR265W, YPL247C, YDL133C-A, YDL136W, YDR196C, YDR224C, YER002W, YFR044C, YHR123W, YHR188C, YJL121C, YJL093C, YKL053C-A, YLR066W, YLR068W, YLR439W, YMR230W, YNL279W, YNL219C, YNL283C, YOR045W, YBR009C, YCR018C-A, YDR071C, YDR077W, YDR373W, YER154W, YGR285C, YIL153W, YIL123W, YJR057W, YKR048C, YNL055C, YNL057W, YOL020W, YOL052C, YOR260W, YOR234C, YPL184C, YPL248C, YJR148W, YAL010C, YAL012W, YAL042W, YAL043C-A, YAL016W, YBR162W-A, YBR196C, YDL075W, YDR261C, YKL081W, YLR034C, YLR037C, YMR171C, YOR014W, YOR078W, YOR390W, YPL028W, YDR502C, YGR037C, YLL009C, YLR344W, YLR378C, YMR139W, YOL144W, YOL086C, YOR293W, YOR325W, YOR327C, YOR357C, YOR329C, YPR054W, YBL003C, YBR265W, YDL232W, YDR349C, YGR254W, YHR214W, YJL159W, YKL209C, YKL178C, YMR260C, YMR296C, YNR037C, YPL092W, YJL062W, YCR088W, YDR105C, YDR139C, YDR471W, YFL017W-A, YGR036C, YHR032W, YJR121W, YLL010C, YLR343W, YLR379W, YMR079W, YMR081C, YMR112C, YMR083W, YNL150W, YNL152W, YOL143C, YOR324C, YPL279C, YLL023C, YNR043W, YBL028C, YBL030C, YBL032W, YBR262C, YGR189C, YHR214W-A, YHR216W, YIL027C, YJL188C, YJL158C, YJL190C, YKL175W, YKL146W, YKL177W, YLR133W, YMR323W, YER060W, YCR023C, YCR059C, YDR086C, YDR450W, YER131W, YGL189C, YHR010W, YHL032C, YIL162W, YKR057W, YKR093W, YLR262C-A, YLR234W, YLR264W, YMR055C, YNL038W, YOR239W, YPL221W, YPL225W, YPL256C, YIL114C, YBR171W, YDR232W, YDR234W, YEL058W, YHR190W, YLR040C, YLR104W, YLR420W, YNL259C, YOR081C, YOR085W, YPL031C, YPL066W, YPL037C, YDL058W, YCR053W, YDR447C, YGL245W, YHR005C-A, YHL001W, YIL127C, YLR292C, YML126C, YNL094W, YNL066W, YOL030W, YOL061W, YOR210W, YAL022C, YDL081C, YGL056C, YGL028C, YHR189W, YKL057C, YKL120W, YLR041W, YLR043C, YML009C, YMR203W, YMR205C, YMR237W, YNL288W, YOR018W, YOR020C, YOR084W, YPL032C, YPL063W, YBR084C-A, YCR097W, YDR179C, YDR510W, YFL026W, YHR072W-A, YJR159W, YKL003C, YLR354C, YLR388W, YOL092W, YOL122C, YPR062W, YDL208W, YDR322C-A, YDR357C, YER043C, YGL087C, YGL089C, YGR260W, YGR234W, YIL006W, YIL036W, YML070W, YMR272C, YNL321W, YPL162C, YCR090C, YDL045W-A, YDR115W, YFL023W, YIR016W, YJR131W, YLL018C, YLR325C, YMR116C, YMR088C, YNL190W, YNL162W, YOL119C, YOR299W, YPL281C, YPR002C-A, YGR259C, YJR004C, YKL216W, YKL156W, YLR167W, YMR303C, YNR042W, YNR044W, YNL322C, YDR056C, YDR090C, YDR454C, YDR396W, YGL191W, YGL225W, YIL138C, YLR303W, YMR006C, YMR039C, YOR277C, YOR247W, YPL262W, YAL033W, YBR243C, YBR249C, YER019C-A, YGL031C, YGR148C, YHR136C, YHR141C, YJL079C, YML019W, YMR245W, YMR188C, YNL263C, YPL076W, YER012W, YCR028C-A, YGL255W, YHL003C, YHR019C, YIL169C, YJR077C, YKR094C, YLR237W, YLR300W, YLR302C, YNL070W, YNL074C, YNL045W, YOR246C, YOR248W, YAL030W, YBR244W, YDL121C, YGL032C, YGR118W, YJL136C, YKL069W, YLR051C, YLR083C, YLR421C, YMR215W, YNL268W, YBR090C, YDL029W, YFL034C-A, YFL037W, YGR085C, YGR027C, YJR135W-A, YKL006W, YKL008C, YLR328W, YLR394W, YLR332W, YLR334C, YMR158C-B, YOR307C, YOR369C, YPR074C, YPR044C, YBL082C, YCL007C, YCL009C, YDL184C, YIL008W, YKL164C, YKL196C, YLR180W, YLR212C, YML108W, YML052W, YMR305C, YNR055C, YPL170W, YKL004W, YKL006C-A, YLR022C, YLR390W-A, YLR331C, YLR333C, YOL127W, YOL159C, YOL103W, YOR306C, YPR043W, YBL018C, YDR365C, YER048W-A, YGR209C, YKL160W, YKL163W, YLR147C, YLR177W, YML077W, YML081C-A, YMR307W, YOR182C, YPL139C	None	"A | 0.001 0.001 0.056 0.642 0.185 0.199 0.574 0.142 0.640 0.116 0.058 0.060 0.030 0.186 0.001 0.001 0.001 0.572 
C | 0.941 0.015 0.044 0.126 0.427 0.142 0.071 0.569 0.001 0.367 0.196 0.181 0.670 0.426 0.983 0.997 0.001 0.095 
G | 0.001 0.983 0.885 0.101 0.373 0.186 0.299 0.218 0.015 0.316 0.001 0.472 0.210 0.187 0.015 0.001 0.956 0.178 
T | 0.057 0.001 0.015 0.131 0.015 0.472 0.056 0.071 0.344 0.201 0.745 0.287 0.090 0.201 0.001 0.001 0.042 0.155 
"
GAL80	YML051W	Pachkov et al	http://www.ncbi.nlm.nih.gov/pubmed/17130146	CGGAGGATTGTCATCCG	0.0005947955	17.92	22.8745	19.52	"Transcriptional regulator involved in the repression of GAL genes in the absence of galactose; inhibits transcriptional activation by Gal4p; inhibition relieved by Gal3p or Gal1p binding
"	YAR050W, YBR012W-A, YBR012W-B, YBR017C, YBR018C, YBR019C, YBR020W, YBR251W, YCR028C, YDL091C, YDL092W, YDL094C, YDL104C, YDR210W-D, YDR279W, YDR282C, YDR370C, YDR371W, YDR372C, YDR373W, YDR522C, YER041W, YER183C, YFR041C, YFR042W, YGL079W, YGR218W, YJL111W, YJL155C, YJL203W, YJL204C, YJL207C, YJR088C, YJR089W, YKL072W, YKL077W, YKL177W, YKL179C, YKR103W, YLL016W, YMR126C, YNL048W, YNL049C, YNL050C, YOL023W, YOR111W	YHR146W, YMR042W, YGR151C, YLL062C, YBR093C, YBR129C, YER029C, YMR023C, YLR099C, YGL153W, YNL310C, YBR018C, YBR020W, YNL289W, YBR019C, YOR304C-A, YOL007C, YBR244W, YEL064C, YLR081W, YML050W, YML051W	None	"A | 0.001 0.001 0.001 0.546 0.367 0.181 0.630 0.001 0.001 0.001 0.001 0.107 0.380 0.001 0.001 0.001 0.001 
C | 0.997 0.001 0.001 0.248 0.088 0.184 0.237 0.386 0.001 0.426 0.240 0.564 0.258 0.200 0.798 0.997 0.001 
G | 0.001 0.997 0.997 0.205 0.544 0.385 0.132 0.086 0.154 0.572 0.001 0.328 0.362 0.081 0.200 0.001 0.997 
T | 0.001 0.001 0.001 0.001 0.001 0.249 0.001 0.527 0.844 0.001 0.758 0.001 0.001 0.719 0.001 0.001 0.001 
"
GAT1	YFL021W, MEP80, NIL1	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	CCTTATCGG	0.0003400032	7.35	11.6481	10.74	"Transcriptional activator of genes involved in nitrogen catabolite repression; contains a GATA-1-type zinc finger DNA-binding motif; activity and localization regulated by nitrogen limitation and Ure2p
"	YAL012W, YAL022C, YAL033W, YAL034C, YBL015W, YBR049C, YBR051W, YBR058C-A, YBR059C, YBR230C, YBR266C, YBR268W, YBR269C, YCL068C, YDL079C, YDL173W, YDL174C, YDR019C, YDR186C, YDR188W, YDR303C, YDR474C, YER187W, YER187W-A, YFL023W, YFL024C, YFR017C, YFR051C, YFR052W, YGR037C, YGR038W, YGR180C, YGR257C, YHR021C, YHR021W-A, YHR179W, YHR193C, YHR194W, YHR199C, YHR200W, YIL012W, YIL013C, YIL041W, YIL042C, YJL088W, YJL143W, YJL210W, YJL212C, YLR378C, YLR380W, YLR439W, YML098W, YML099C, YML115C, YMR034C, YMR035W, YMR192W, YMR302C, YNL098C, YNL303W, YNL304W, YNL305C, YNL321W, YNL322C, YNR017W, YOL140W, YOR113W, YOR162C, YOR163W, YOR317W, YPL177C, YPL265W	YNL213C, YDR371W, YPL016W, YMR256C, YIL045W, YOR043W, YJR148W, YNL278W, YDL198C, YFL021W, YGL029W, YGR164W, YJR095W, YNL064C, YJL036W, YOL119C, YHR136C, YDL091C, YFL068W, YNR048W	DAL80	"A | 0.010 0.010 0.010 0.030 0.970 0.010 0.010 0.228 0.020 
C | 0.460 0.850 0.010 0.010 0.010 0.010 0.970 0.010 0.317 
G | 0.240 0.130 0.010 0.010 0.010 0.010 0.010 0.653 0.426 
T | 0.290 0.010 0.970 0.950 0.010 0.970 0.010 0.109 0.238 
"
GAT3	YLR013W	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	ATAACATG	1.047461e-07	6.33	9.5671	8.83	"Protein containing GATA family zinc finger motifs
"	YBL107C, YBL108W, YBL109W, YBL111C, YBL112C, YBL113C, YBR057C, YBR084C-A, YBR085W, YBR181C, YBR190W, YBR191W, YCL065W, YCL066W, YCL067C, YCL068C, YCL074W, YCR038C, YCR039C, YCR040W, YCR041W, YCR096C, YCR105W, YDL075W, YDL076C, YDL082W, YDL083C, YDL114W, YDL115C, YDL133W, YDL191W, YDL224C, YDR022C, YDR418W, YDR449C, YDR450W, YDR470C, YDR471W, YDR542W, YDR543C, YDR544C, YDR545W, YEL054C, YEL074W, YEL075C, YEL076C, YEL076C-A, YER056C-A, YER074W, YER116C, YER117W, YFL046W, YFL062W, YFL063W, YFL064C, YFL065C, YFL067W, YFR031C-A, YGL030W, YGL031C, YGL189C, YGL260W, YGL261C, YGR117C, YGR118W, YGR148C, YGR149W, YGR295C, YGR296W, YHL045W, YHL046C, YHL048W, YHL049C, YHR021C, YHR021W-A, YHR036W, YHR037W, YHR091C, YHR141C, YHR142W, YHR203C, YHR204W, YIL018W, YIL128W, YIL129C, YIL133C, YIL148W, YIL149C, YIL174W, YIL175W, YIL177C, YIR040C, YIR041W, YIR043C, YJL042W, YJL134W, YJL135W, YJL136C, YJL177W, YJL178C, YJL189W, YJL190C, YJL225C, YJR001W, YJR044C, YJR067C, YJR068W, YJR070C, YJR161C, YKL001C, YKL006C-A, YKL006W, YKL180W, YKL223W, YKL224C, YLL064C, YLL065W, YLL066C, YLL067C, YLR047C, YLR048W, YLR185W, YLR207W, YLR441C, YLR447C, YLR448W, YLR461W, YLR462W, YLR463C, YLR464W, YLR465C, YLR466W, YLR467W, YML024W, YML025C, YML026C, YML063W, YML064C, YML073C, YML132W, YML133C, YMR142C, YMR143W, YMR242C, YMR324C, YMR325W, YNL069C, YNL302C, YNL336W, YNL337W, YNL338W, YNL339C, YNR029C, YNR030W, YNR076W, YOL039W, YOL040C, YOL127W, YOL128C, YOL165C, YOL166C, YOR234C, YOR292C, YOR293W, YOR312C, YOR318C, YOR319W, YPL090C, YPL143W, YPL283C, YPR102C, YPR103W, YPR131C, YPR132W, YPR202W, YPR203W	YHR146W, YOR377W, YPL016W, YJL050W, YBL024W, YGR211W, YBL091C-A, YAR015W, YEL020W-A, YGR160W, YHR182W, YJL095W, YLR068W, YOR043W, YMR023C, YNL248C, YFR017C, YGL111W, YGR006W, YNL182C, YOR324C, YDL201W, YDR346C, YLR129W, YMR290W-A, YNR001C, YNR038W, YNL036W, YPL254W, YLR258W, YOR272W, YKL120W, YMR235C, YNL256W, YPL030W, YPL063W, YNL160W, YER067W, YPL093W, YIL172C, YOR095C, YMR034C, YEL037C, YHR135C, YMR246W, YNL264C, YCL040W, YFL034C-B, YJL168C	None	"A | 0.854 0.002 0.732 0.750 0.170 0.814 0.001 0.019 
C | 0.017 0.002 0.048 0.060 0.654 0.001 0.009 0.001 
G | 0.001 0.001 0.004 0.117 0.162 0.001 0.001 0.979 
T | 0.128 0.995 0.216 0.073 0.014 0.184 0.989 0.001 
"
GAT4	YIR013C	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	TAGATCTATTC		8.38	11.2712	11.18	"Protein containing GATA family zinc finger motifs
"	No Data	No Data	None	"A | 0.020 0.840 0.020 0.910 0.070 0.010 0.010 0.820 0.121 0.370 0.190 
C | 0.130 0.010 0.010 0.010 0.010 0.960 0.140 0.030 0.303 0.100 0.560 
G | 0.030 0.140 0.960 0.010 0.010 0.010 0.010 0.130 0.091 0.110 0.100 
T | 0.820 0.010 0.010 0.070 0.910 0.020 0.840 0.020 0.485 0.420 0.150 
"
GCN4	YEL009C, AAS101, ARG9, AAS3	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	ATGACTCAT	1.4961948e-93	6.69	11.3759	10.22	"Basic leucine zipper (bZIP) transcriptional activator of amino acid biosynthetic genes in response to amino acid starvation; expression is tightly regulated at both the transcriptional and translational levels
"	YBL001C, YBL059W, YBL076C, YBR043C, YBR048W, YBR104W, YBR112C, YBR114W, YBR115C, YBR144C, YBR145W, YBR218C, YBR248C, YBR249C, YBR250W, YBR256C, YBR257W, YCL002C, YCL006C, YCL007C, YCL008C, YCL009C, YCL010C, YCL030C, YCR002C, YCR004C, YCR005C, YCR006C, YCR008W, YCR012W, YCR096C, YDL044C, YDL054C, YDL170W, YDL171C, YDL182W, YDL198C, YDR034C, YDR035W, YDR042C, YDR084C, YDR125C, YDR126W, YDR127W, YDR144C, YDR145W, YDR341C, YDR354W, YDR481C, YEL001C, YEL062W, YEL063C, YER052C, YER055C, YER069W, YER073W, YER085C, YER086W, YER089C, YER090W, YGL125W, YGL184C, YGL202W, YGL234W, YGL236C, YGR071C, YGR072W, YGR094W, YGR218W, YGR267C, YGR269W, YGR271W, YHR018C, YHR071W, YHR161C, YHR162W, YJL003W, YJL004C, YJL071W, YJL072C, YJL088W, YJL200C, YJR016C, YJR018W, YJR025C, YJR026W, YJR027W, YJR028W, YJR029W, YJR109C, YJR110W, YJR111C, YJR112W, YKL015W, YKL016C, YKL211C, YLL004W, YLL005C, YLR261C, YLR262C, YLR302C, YLR355C, YLR356W, YLR451W, YMR019W, YMR062C, YMR063W, YMR095C, YMR096W, YNL004W, YNL005C, YNL103W, YNL104C, YNL309W, YNL311C, YNL337W, YNR050C, YOL058W, YOL064C, YOL119C, YOL140W, YOL160W, YOR108W, YOR130C, YOR201C, YOR202W, YOR203W, YOR204W, YOR221C, YOR222W, YOR302W, YOR303W, YOR337W, YPL111W, YPL188W, YPL252C, YPL273W, YPR038W, YPR039W, YPR040W, YPR110C, YPR111W, YPR185W	YCR040W, YDR068W, YGR280C, YOR225W, YDL131W, YGL009C, YPL019C, YDR035W, YMR044W, YOR226C, YHR143W-A, YJL052W, YOR382W, YGR063C, YOL142W, YOR285W, YOR287C, YOR351C, YPL187W, YDL222C, YER024W, YHR208W, YBR091C, YBR093C, YDR461W, YFR008W, YHR021C, YJR146W, YNL146W, YOR288C, YCL018W, YDR281C, YIL015W, YLR185W, YML055W, YMR287C, YER109C, YCL065W, YPL183W-A, YDL106C, YKL054C, YOR045W, YBR011C, YNL027W, YJR148W, YER001W, YLR348C, YOL144W, YBL062W, YGR192C, YKL209C, YKL178C, YLR343W, YLR349W, YNL150W, YOL143C, YKL177W, YLR234W, YOR239W, YKL058W, YLR040C, YLR420W, YNL259C, YOR393W, YCL066W, YHR005C-A, YOR210W, YDR235W, YKL120W, YLR041W, YOR020C, YOR054C, YFL026W, YFL059W, YFL030W, YHR072W-A, YLR388W, YNL195C, YOR383C, YDR322C-A, YGL089C, YBR145W, YNL162W, YPL281C, YBL042C, YGR233C, YJR004C, YKL216W, YDR056C, YHR018C, YLR303W, YAL033W, YER019C-A, YHR136C, YHR141C, YBR053C, YCR028C-A, YIL105C, YLR302C, YNL070W, YAR044W, YGL032C, YGL004C, YHR140W, YBR118W, YJR135W-A, YJR009C, YEL009C, YCL039W, YBR276C, YCL006C, YML081C-A, YOR182C	ABF1, ACA1, ARG80, BAS1, CBF1, LEU3, RSC3, RTG3, STB3, TYE7	"A | 0.547 0.012 0.011 0.964 0.009 0.015 0.073 0.915 0.038 
C | 0.059 0.010 0.026 0.012 0.657 0.010 0.891 0.022 0.352 
G | 0.363 0.011 0.889 0.013 0.323 0.014 0.024 0.016 0.060 
T | 0.031 0.968 0.075 0.012 0.010 0.962 0.013 0.046 0.550 
"
GCR1	YPL075W, LPF10	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	GGCTTCCAC	8.810024e-08	9.25	11.1623	11.61	"Transcriptional activator of genes involved in glycolysis; DNA-binding protein that interacts and functions with the transcriptional activator Gcr2p
"	YAL004W, YAL038W, YBL074C, YBL107W-A, YBR025C, YBR032W, YBR089C-A, YBR090C, YBR196C, YBR210W, YDL085W, YDL129W, YDR050C, YDR065W, YDR098C, YDR210W-C, YDR240C, YDR316W-A, YDR316W-B, YDR417C, YDR419W, YDR472W, YER097W, YER098W, YER137C, YER137C-A, YER177W, YGL005C, YGL062W, YGR024C, YGR038C-A, YGR084C, YGR192C, YGR215W, YGR240C, YGR242W, YHL034C, YHR173C, YHR174W, YJL045W, YJL223C, YJR009C, YKL060C, YKL119C, YKL127W, YKL152C, YLR027C, YLR028C, YLR044C, YML067C, YMR045C, YMR046C, YOL015W, YOL016C, YOL026C, YOL086C, YOL121C, YOR272W, YOR355W, YPL003W, YPL004C, YPL130W, YPL273W	YBL113C, YBL086C, YBR004C, YBR006W, YCL048W, YCR012W, YDR034C-C, YDR064W, YDR400W, YDR432W, YDR404C, YER145C, YER118C, YER178W, YGL199C, YGR282C, YIL078W, YIL142W, YIL080W, YIL148W, YJR016C, YLR214W, YLR244C, YML114C, YMR014W, YMR045C, YML117W-A, YNL050C, YNL052W, YNL085W, YOL012C, YOL043C, YNR061C, YOR191W, YOR253W, YOR192C-A, YPL237W, YAL064W-B, YBR187W, YBR219C, YBR189W, YBR191W, YBR162C, YDL066W, YDL130W, YDR188W, YDR222W, YEL046C, YFR032C-A, YGL009C, YGL041C, YGL011C, YFR038W, YGR091W, YGR124W, YHR143W, YHR174W, YHR119W, YJL049W, YKL045W, YKL049C, YLR025W, YLR056W, YLR027C, YLR058C, YLR062C, YLR094C, YLR432W, YLR463C, YLR465C, YLR467W, YNL239W, YNL209W, YNL241C, YNL277W, YOR033C, YOR065W, YPL015C, YOR381W, YPL019C, YPR145W, YBL112C, YBR031W, YBL087C, YBR005W, YCR037C, YCR039C, YCR013C, YCL054W, YDR005C, YDR034C-D, YDR433W, YER173W, YER117W, YER177W, YGL168W, YGL200C, YHL015W, YHL047C, YIL082W, YIL083C, YJR015W, YJR047C, YLR213C, YLR249W, YMR011W, YMR015C, YMR046C, YNR056C, YOL014W, YOL016C, YOR190W, YOR254C, YOR192C-B, YOR194C, YAL003W, YAL035C-A, YAL036C, YAL038W, YDL061C, YDL095W, YDL097C, YDL067C, YDR187C, YDR251W, YEL011W, YEL076C, YFR033C, YGL040C, YGL012W, YGR123C, YGR155W, YGR157W, YHR112C, YHR142W, YHR179W, YJL080C, YJL114W, YJL116C, YJL086C, YLR028C, YLR061W, YLR466W, YNL274C, YOR068C, YOR007C, YPL014W, YPL048W, YOR380W, YPL050C, YPR138C, YDR050C, YBR092C, YBR096W, YDR158W, YDR100W, YDR500C, YFL039C, YFL045C, YFR009W, YGR063C, YGR035C, YHR083W, YHR025W, YJR143C, YJR145C, YJR147W, YKL016C, YJR118C, YLL034C, YLR340W, YLR372W, YMR105C, YMR107W, YOL104C, YOR317W, YOR289W, YPL268W, YPR048W, YPR020W, YPR052C, YPL235W, YBL027W, YBR283C, YBR287W, YDL192W, YDL226C, YDR276C, YDR341C, YDR314C, YER024W, YER026C, YER055C, YER056C-A, YER086W, YGL103W, YGL135W, YGL105W, YGL137W, YGR180C, YGR214W, YHR208W, YHR210C, YIL018W, YIL050W, YIL052C, YJL145W, YJL177W, YJL183W, YKL170W, YKL174C, YKL207W, YLR120C, YLR156W, YLR186W, YML085C, YML058C-A, YML058W-A, YMR316W, YNL301C, YNR030W, YPL142C, YFL029C, YBR127C, YBR067C, YDR157W, YDR098C-A, YDR131C, YFL013C, YGR060W, YGR034W, YHR026W, YIL177C, YJR117W, YKL017C, YLL061W, YLR304C, YLR367W, YLR339C, YMR131C, YNL180C, YOL077W-A, YOL139C, YOR344C, YPL265W, YPL271W, YAR062W, YBL024W, YBL058W, YBR250W, YCL020W, YDL191W, YER023W, YER081W, YER025W, YER083C, YER027C, YER087C-A, YGL102C, YGL136C, YGR211W, YGR183C, YGR185C, YHR211W, YIL051C, YJL180C, YJL212C, YKL167C, YKL169C, YKL206C, YML022W, YML053C, YML024W, YML026C, YML086C, YML028W, YML058W, YNL300W, YNL332W, YNL302C, YNL338W, YOR096W, YPL079W, YPL111W, YPL143W, YPL081W, YPL145C, YBR010W, YBR012C, YCR021C, YDR012W, YDR072C, YDR408C, YDR444W, YER119C-A, YGL238W, YGL177W, YGR284C, YHL050C, YGR286C, YHR001W-A, YIL122W, YJR026W, YJR094W-A, YKR022C, YKR053C, YLR286C, YLR257W, YLR287C-A, YMR020W, YML125C, YNL030W, YOL052C-A, YNR071C, YOR199W, YPL183W-A, YAL044C, YAR015W, YBR169C, YDL070W, YDL133C-A, YDL072C, YDR224C, YGR161C-C, YGR161W-A, YHR123W, YJL121C, YJL063C, YKL117W, YKL056C, YLR100W, YLR038C, YLR441C, YML008C, YMR202W, YNL217W, YNL283C, YOR385W, YBL091C, YBR007C, YBL092W, YBR009C, YBR039W, YCR049C, YCL064C, YDR377W, YDR411C, YER119C, YER148W, YER120W, YER150W, YER152C, YHL017W, YGR285C, YIL117C, YIL121W, YIL123W, YIL155C, YJR025C, YKR048C, YNL054W-A, YNL055C, YOL052C, YOR260W, YOR198C, YOR230W, YOR232W, YOR234C, YPL248C, YPL218W, YPL249C-A, YJR148W, YAL012W, YAL042W, YAR007C, YAL043C-A, YBR196C, YBR230C, YDL075W, YDR225W, YER003C, YEL053C, YGL016W, YGL048C, YGR161C, YGR161W-B, YHR181W, YJL124C, YKL081W, YKL085W, YKL087C, YLR101C, YLR437C, YLR438W, YLR410W-A, YML007W, YNL248C, YOR078W, YPL026C, YPL028W, YBR132C, YBR106W, YCR084C, YDL007W, YDL039C, YDR134C, YDR168W, YDR502C, YGR037C, YHR089C, YHR093W, YIR005W, YJL026W, YJR124C, YLL036C, YLL009C, YLR312W-A, YLR344W, YLR378C, YLR380W, YLR350W, YOL086C, YOL088C, YOR293W, YOR323C, YPL278C, YPR058W, YPR028W, YPR010C, YAR073W, YBL003C, YBL033C, YBL064C, YBR265W, YDL200C, YER036C, YGL147C, YGL117W, YGR254W, YGR192C, YIL022W, YHR215W, YHR217C, YJL191W, YKL180W, YKL151C, YKL182W, YLR162W, YLR194C, YLR134W, YLR196W, YML031W, YMR318C, YPL090C, YFL014W, YFL031W, YBR099C, YBR105C, YDR105C, YDR471W, YFL017W-A, YFL048C, YGR038W, YHR030C, YHR060W, YHR092C, YHR064C, YJR150C, YJR121W, YJR123W, YLL037W, YLL041C, YLR379W, YLR349W, YMR142C, YOL111C, YPL273W, YPL279C, YPR059C, YNR043W, YAR071W, YAR075W, YBL002W, YBL032W, YBR296C, YDL229W, YDR346C, YER031C, YER090W, YGL112C, YGR219W, YGR189C, YGR253C, YGR255C, YGR257C, YIL021W, YIL053W, YIL023C, YHR216W, YJL184W, YJL154C, YJL188C, YJL158C, YJL190C, YKL210W, YKL148C, YKL150W, YKL181W, YML090W, YML092C, YML063W, YMR292W, YNR001C, YNR003C, YNL312W, YNR036C, YPL117C, YGL062W, YBR048W, YBR052C, YCL067C, YDR382W, YDR386W, YDR418W, YDR450W, YDR388W, YER131W, YGL189C, YHR010W, YJR032W, YJR064W, YJR070C, YKR057W, YKR059W, YKR061W, YLR259C, YLR293C, YLR264W, YNL036W, YNL067W, YNL069C, YOL027C, YOL002C, YOR209C, YOR243C, YPL225W, YDR345C, YBR205W, YDL082W, YDL084W, YDR261W-A, YDR210W, YEL026W, YEL058W, YER009W, YFR052W, YGR138C, YGR109W-B, YJL097W, YJL101C, YKL058W, YKL060C, YKL096W, YKL127W, YLR044C, YLR076C, YLR110C, YLR414C, YLR447C, YLR449W, YML012W, YMR174C, YMR242C, YNL255C, YNL227C, YOR053W, YEL054C, YBR015C, YCR053W, YDR447C, YDR417C, YER156C, YGL245W, YGL184C, YHR005C-A, YHR007C, YHL001W, YHL031C, YIL157C, YJR065C, YKR088C, YLR229C, YML126C, YML128C, YMR058W, YNL031C, YNL066W, YNL037C, YOL026C, YOL057W, YOL030W, YOL061W, YPL220W, YJR041C, YAR018C, YAL022C, YBR240C, YDL081C, YDL083C, YDR233C, YDR209C, YGL022W, YFR051C, YGL028C, YGR135W, YGR137W, YGR109W-A, YGR167W, YHR193C, YHR133C, YHR163W, YKL057C, YLR075W, YLR413W, YML009C, YLR448W, YMR203W, YMR235C, YMR205C, YOR016C, YOR020C, YPL061W, YPL067C, YBR299W, YBR078W, YBR084C-A, YBR146W, YDL015C, YDL046W, YCR097W, YDL021W, YFR021W, YFL061W, YFR024C-A, YGR019W, YHR071W, YHR072W-A, YJL002C, YJL034W, YKL030W, YKL001C, YKL032C, YKL003C, YLL044W, YLR388W, YLR390W, YMR149W, YMR120C, YNL197C, YOL120C, YOL092W, YOL126C, YOL158C, YOR331C, YOR302W, YOR335C, YPR002W, YPR004C, YOR383C, YBL072C, YDR322C-A, YDR353W, YDR357C, YDR298C, YER043C, YGL121C, YGL123W, YGR196C, YGR260W, YGR264C, YGR234W, YHR219W, YJL193W, YKL153W, YLR172C, YNR047W, YPL094C, YPL132W, YBR143C, YDL014W, YCR096C, YDR174W, YDR176W, YDR544C, YFR022W, YFR024C, YIR012W, YJL001W, YJR158W, YKL029C, YJR133W, YLR008C, YLL045C, YLL018C, YLR355C, YLR325C, YMR085W, YMR116C, YMR146C, YMR090W, YMR121C, YMR152W, YNL160W, YNL162W, YOL151W, YOL121C, YOL123W, YOR332W, YOR303W, YPR061C, YPR067W, YBL040C, YDR354W, YDR297W, YER098W, YER044C, YGL086W, YGL120C, YGR195W, YGR259C, YIL033C, YIL067C, YKL152C, YKL216W, YKL154W, YKL156W, YLR197W, YLR167W, YLR203C, YML073C, YMR303C, YNL322C, YNR046W, YOR112W, YOR174W, YPL131W, YPR182W, YER091C, YBR054W, YCR004C, YCR034W, YDR454C, YER138C, YGL191W, YGL225W, YGL258W, YHL004W, YHL034C, YHL009W-A, YHR020W, YIL136W, YIL170W, YIL108W, YJR104C, YJR108W, YKR065C, YMR002W, YMR035W, YMR006C, YNL073W, YOL037C, YOL039W, YOL072W, YOR277C, YOR247W, YOR251C, YPL197C, YPL199C, YAL060W, YAL064C-A, YAR053W, YDR212W, YEL034W, YGL031C, YGL001C, YGR144W, YGR148C, YGR176W, YHR141C, YJL143W, YKL103C, YLR048W, YMR182C, YOR063W, YBR055C, YBR025C, YBL109W, YBR059C, YCR001W, YCR028C-A, YCR031C, YCR005C, YDR029W, YDR091C, YDR427W, YFL002W-B, YER165W, YGL226C-A, YHL033C, YHR019C, YIL133C, YIL171W, YJR105W, YJR045C, YKR094C, YKR033C, YKR096W, YLR267W, YLR300W, YLR271W, YMR038C, YNL072W, YOL036W, YOL040C, YOR276W, YOR248W, YOR280C, YPL198W, YPL234C, YKL009W, YAR035W, YBR244W, YDR210W-A, YDR210W-C, YDR211W, YEL066W, YER018C, YEL037C, YFR055W, YGL030W, YGL036W, YGR118W, YHR203C, YJL104W, YJL136C, YJL138C, YJL078C, YKL096W-A, YMR243C, YMR217W, YPL042C, YPR162C, YPR107C, YBR116C, YDR154C, YDR186C, YFL037W, YFR031C-A, YGR085C, YGR027C, YGR087C, YHR046C, YJL041W, YJL012C, YJL014W, YJR135W-A, YKL006W, YKL008C, YLL024C, YMR095C, YMR130W, YOL098C, YOR369C, YOR343C-B, YCL040W, YCL042W, YIL070C, YJR009C, YKL192C, YLR150W, YLR180W, YLR212C, YNL327W, YNR053C, YPL136W, YBR147W, YBR121C, YDR155C, YGR082W, YGR084C, YHR047C, YJL009W, YLR327C, YLR359W, YLR333C, YMR096W, YOL127W, YOR306C, YOR312C, YOR343C-A, YOR374W, YPR069C, YPR007C, YPR009W, YPR073C, YPR043W, YBL077W, YBL048W, YCL043C, YDR360W, YDR365C, YER102W, YIL069C, YJL200C, YKL197C, YLR149C, YML107C, YMR307W, YNR021W	None	"A | 0.136 0.055 0.041 0.103 0.029 0.029 0.029 0.566 0.166 
C | 0.030 0.031 0.900 0.029 0.029 0.911 0.899 0.038 0.572 
G | 0.805 0.828 0.030 0.029 0.029 0.031 0.043 0.034 0.096 
T | 0.029 0.086 0.029 0.839 0.913 0.029 0.029 0.362 0.166 
"
GCR2	YNL199C	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	GCTTCCT	1.2081916e-05	7.05	10.0821	8.52	"Transcriptional activator of genes involved in glycolysis; interacts and functions with the DNA-binding protein Gcr1p
"	YAL022C, YBL001C, YBR012W-A, YBR012W-B, YBR159W, YBR196C, YCR024C, YDL122W, YDR003W, YDR042C, YDR048C, YDR050C, YDR098C, YDR098C-A, YDR098C-B, YDR179C, YDR179W-A, YDR210W-C, YDR240C, YDR279W, YDR526C, YEL047C, YEL055C, YER007C-A, YER013W, YER177W, YER179W, YGL134W, YGL202W, YGR038C-A, YGR084C, YGR085C, YGR156W, YGR190C, YGR192C, YGR212W, YGR263C, YGR265W, YHR182W, YIL014W, YJL003W, YJL004C, YJL049W, YJL148W, YJL203W, YJL204C, YJR009C, YJR044C, YJR100C, YJR137C, YJR138W, YKL043W, YKL060C, YKL152C, YLL032C, YLR027C, YLR043C, YLR044C, YLR189C, YLR190W, YLR195C, YLR196W, YLR261C, YLR262C, YLR264W, YLR354C, YLR368W, YML055W, YML056C, YMR193C-A, YMR257C, YMR267W, YNL009W, YNL040W, YNL041C, YNL066W, YNL097C, YNL111C, YNR050C, YOL023W, YOL121C, YOR102W, YOR138C, YOR140W, YOR360C, YPL034W, YPL251W, YPL253C, YPL257W-A, YPL257W-B, YPR109W	YBL084C, YBR030W, YBL086C, YBR006W, YCR010C, YCR038C, YCR012W, YCR014C, YCR042C, YDR034C-C, YDR368W, YER172C, YER147C, YGL230C, YHL042W, YHL044W, YHL048W, YJR048W, YLR214W, YNL018C, YNL052W, YOR192C-A, YAL034W-A, YAL064W-B, YBR187W, YBR189W, YDL131W, YDR220C, YDR252W, YDR222W, YGL043W, YGR124W, YHR174W, YKL043W, YKL105C, YKL107W, YLR432W, YMR220W, YMR162C, YNL239W, YOR065W, YOR377W, YPL017C, YPL049C, YCR057C, YDR207C, YCR013C, YHL015W, YIL111W, YJR015W, YLR243W, YMR040W, YML113W, YMR011W, YOR222W, YOR254C, YPL240C, YPL210C, YAL065C, YAL036C, YAL067C, YAL038W, YAL069W, YBR155W, YHR112C, YJL052W, YKL106W, YLR089C, YNL238W, YNL240C, YPL018W, YPL050C, YDR050C, YBR092C, YGL262W, YGR033C, YGR065C, YHR057C, YJR114W, YJR145C, YLL034C, YLR340W, YLR372W, YMR105C, YOL104C, YOL077C, YOR289W, YPL266W, YPL268W, YPR048W, YOR359W, YBL027W, YBR283C, YDL226C, YER055C, YGL103W, YGL135W, YGR214W, YHR210C, YIL018W, YJL177W, YJL151C, YJL215C, YLR156W, YLR186W, YML054C, YMR254C, YMR290C, YNL301C, YNL303W, YNL307C, YPL112C, YPL146C, YJL050W, YBR093C, YBR067C, YDR125C, YDR161W, YFR004W, YLR339C, YLR341W, YMR131C, YNL112W, YNL178W, YOL139C, YOR344C, YOR318C, YMR238W, YBL058W, YBR288C, YCL020W, YDR281C, YGL076C, YGR211W, YHR211W, YJL208C, YLR181C, YML053C, YML026C, YML086C, YML028W, YMR315W, YPL079W, YPL081W, YIR006C, YBR012C, YHR001W-A, YIL090W, YLR224W, YMR020W, YML125C, YNL061W, YNR071C, YOL056W, YOR197W, YOR229W, YOR199W, YOR201C, YPL245W, YMR129W, YBR169C, YDL070W, YDL076C, YGL021W, YGR160W, YGR105W, YHR184W, YKL051W, YKL115C, YKL086W, YLR036C, YLR100W, YLR038C, YLR441C, YML008C, YMR170C, YNL217W, YNL281W, YOR043W, YBL092W, YCL064C, YIL087C, YIL121W, YJR025C, YKR048C, YLR285W, YML120C, YMR049C, YOL052C, YOL022C, YOR260W, YOR198C, YPL183C, YPL249C-A, YBR196C, YGR159C, YJL122W, YLR099C, YLR101C, YLR409C, YMR195W, YMR171C, YNL248C, YNL220W, YOR040W, YPL026C, YHR065C, YIR007W, YJR124C, YLR348C, YLR380W, YOL088C, YOR355W, YOR298W, YPR060C, YAR073W, YBR265W, YCL030C, YDR290W, YER036C, YER038C, YGL111W, YGR254W, YGR192C, YIL022W, YHR215W, YLR192C, YLR196W, YMR291W, YMR318C, YMR296C, YPL090C, YFL014W, YJL062W, YBR137W, YHR094C, YIR035C, YJR123W, YLR004C, YLR349W, YMR108W, YMR142C, YOL143C, YPL273W, YAR071W, YAR075W, YBR296C, YDR346C, YER062C, YGL148W, YGR187C, YIL053W, YHR216W, YKL181W, YLR129W, YLR159W, YLR161W, YML063W, YMR319C, YMR321C, YMR323W, YNR001C, YNR034W, YNR038W, YPL151C, YLR232W, YOL027C, YOL064C, YDR345C, YAR028W, YBR239C, YBR177C, YDR261W-A, YGR138C, YKL060C, YKL092C, YLR449W, YOR393W, YEL054C, YBL101W-A, YDR417C, YGL188C, YLR258W, YLR231C, YMR056C, YML130C, YNL064C, YNL096C, YNL035C, YNL066W, YNR072W, YOR272W, YOR242C, YPL220W, YPL226W, YJR041C, YDL081C, YDL083C, YFR047C, YGR139W, YJL102W, YLR073C, YLR448W, YMR203W, YMR235C, YMR179W, YMR209C, YNL256W, YNL260C, YNL290W, YOR018W, YOR050C, YPL030W, YPL061W, YPL063W, YPR093C, YPR156C, YBR142W, YCR095C, YDL021W, YDR510W, YGR019W, YJL034W, YKL001C, YLR354C, YLR356W, YOL124C, YOL156W, YOL126C, YOR361C, YCL038C, YDR323C, YGL123W, YKL153W, YKL184W, YLR198C, YML070W, YMR272C, YMR304C-A, YNR012W, YBR143C, YCR092C, YDR174W, YDR479C, YFL060C, YGR042W, YHR072W, YIR012W, YJR158W, YLR008C, YLL045C, YLR355C, YMR116C, YMR146C, YMR121C, YNL128W, YNL160W, YNL132W, YOL119C, YOL123W, YPL281C, YPR061C, YCL001W-A, YER067W, YGR231C, YJL196C, YKL152C, YKL156W, YLR197W, YML073C, YNR015W, YPL093W, YPL131W, YER091C, YBR054W, YBR024W, YGL191W, YIL170W, YJR046W, YNL075W, YNL109W, YPL197C, YPL199C, YAL060W, YAL062W, YAL064C-A, YBR179C, YBR183W, YDL124W, YGL037C, YHR170W, YJL139C, YJL079C, YKL066W, YLR050C, YLR082C, YLR114C, YMR182C, YMR214W, YOR091W, YOR095C, YBR021W, YCR005C, YDR033W, YDR395W, YFL002W-B, YGL253W, YHL033C, YIL107C, YIL171W, YJR103W, YJR045C, YMR062C, YMR036C, YNL108C, YOL038W, YPL198W, YPL202C, YKL009W, YAR031W, YBR244W, YDR210W-A, YDR239C, YEL037C, YFR055W, YGL032C, YHR169W, YHR203C, YKL067W, YML018C, YMR181C, YMR215W, YPL075W, YBR116C, YDL023C, YDR120C, YGR085C, YHR046C, YJL043W, YLL024C, YMR093W, YNL199C, YNL141W, YOL132W, YOR309C, YPR006C, YCL005W, YCL040W, YCL042W, YIL011W, YJL169W, YJR009C, YLR174W, YLR178C, YMR278W, YMR310C, YNR022C, YDL022W, YDL053C, YGR052W, YHR108W, YJL044C, YLR363C, YLR395C, YNL134C, YNL168C, YNL200C, YOR306C, YOR368W, YOR343C-A, YPR069C, YPR009W, YPR011C, YLR179C, YML081C-A	TOD6	"A | 0.213 0.001 0.082 0.001 0.001 0.001 0.377 
C | 0.131 0.997 0.001 0.001 0.932 0.967 0.197 
G | 0.541 0.001 0.016 0.001 0.001 0.016 0.033 
T | 0.115 0.001 0.901 0.997 0.066 0.016 0.393 
"
GIS1	YDR096W	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	CCCCTA		6.08	9.75294	8.11	"JmjC domain-containing histone demethylase; transcription factor involved in expression of genes during nutrient limitation and in negative regulation of DPP1 and PHR1; activity is modulated by limited proteasome-mediated proteolysis
"	No Data	No Data	GSM1, MIG1, MIG3, NHP10, NRG1, OAF1, PHD1, RDS2, RPH1, RSC3, RSF2, SKN7, SOK2, STP1, SUT1, UGA3, YDR026C, YER184C	"A | 0.010 0.010 0.010 0.010 0.010 0.490 
C | 0.950 0.970 0.970 0.850 0.010 0.040 
G | 0.010 0.010 0.010 0.010 0.010 0.150 
T | 0.030 0.010 0.010 0.130 0.970 0.320 
"
GLN3	YER040W	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	GATAAGATA	1.1518332e-16	7.06	9.36822	9.13	"Transcriptional activator of genes regulated by nitrogen catabolite repression (NCR), localization and activity regulated by quality of nitrogen source
"	YAL017W, YAL018C, YBL012C, YCL065W, YCL066W, YCL067C, YCR028C, YCR039C, YCR040W, YCR041W, YCR105W, YDL091C, YDL152W, YDL170W, YDL171C, YDL236W, YDR003W, YDR030C, YDR031W, YDR185C, YDR294C, YDR361C, YDR372C, YDR373W, YDR498C, YDR499W, YDR523C, YDR543C, YEL004W, YEL005C, YEL008W, YEL009C, YER007C-A, YER133W, YFR007W, YFR023W, YGR024C, YGR191W, YHR038W, YHR171W, YHR193C, YHR194W, YJL023C, YJL148W, YJR007W, YJR100C, YKL072W, YLR166C, YLR167W, YLR463C, YLR465C, YLR467W, YNL259C, YNR006W, YOR102W, YOR106W, YOR115C, YOR218C, YOR223W, YOR268C, YOR269W, YPL018W, YPL019C, YPR035W, YPR145W	YBR006W, YCR012W, YCR040W, YDR034W-B, YGL234W, YGR280C, YIL082W-A, YML112W, YMR043W, YML116W, YNL016W, YOR195W, YBR187W, YDL128W, YDR192C, YGL009C, YHR143W, YHR174W, YKL049C, YLR058C, YNL277W, YOR377W, YPL049C, YBR031W, YCL049C, YCR013C, YCL054W, YJR015W, YKR076W, YLR247C, YML113W, YMR044W, YNL078W, YNL053W, YNR056C, YOR222W, YPL242C, YCR097W-A, YFR035C, YGL012W, YGR155W, YGR157W, YHR143W-A, YLR089C, YMR191W, YOR382W, YPR138C, YBR124W, YDL003W, YDR096W, YDR496C, YFR007W, YHR053C, YHR025W, YJR145C, YKL014C, YJR116W, YJR147W, YKL018W, YLR340W, YMR101C, YNL149C, YOR285W, YOR315W, YOR351C, YPL268W, YPL187W, YBR283C, YER026C, YGR180C, YGR212W, YGR214W, YHR208W, YML023C, YML058W-A, YMR312W, YBR093C, YBR067C, YDR461W, YDR497C, YFR008W, YHR084W, YHR026W, YJR115W, YLL061W, YLR339C, YNL146W, YOL109W, YOR316C, YPR013C, YPR015C, YCL012W, YCL018W, YBR256C, YDR281C, YGR185C, YIL015W, YLR185W, YML055W, YMR251W-A, YNL332W, YCL065W, YDR012W, YIL086C, YIL152W, YIL122W, YLR286C, YLR287C-A, YML123C, YNL089C, YOR265W, YAR015W, YDL070W, YJL063C, YLR038C, YLR439W, YOR389W, YPR124W, YER124C, YER154W, YGR285C, YJR025C, YJR148W, YAL012W, YAL014C, YBR196C, YER001W, YLR034C, YLR438W, YMR171C, YNL220W, YOR390W, YPL060C-A, YPR119W, YBR070C, YDL041W, YFL022C, YJL026W, YIR009W, YLR380W, YOL086C, YBR265W, YGR254W, YHR215W, YJL153C, YKL178C, YLR130C, YLR132C, YPL092W, YFL014W, YJR156C, YLL010C, YLR343W, YOR298C-A, YPR027C, YAR071W, YBL032W, YCL027W, YKL177W, YLR133W, YMR323W, YDR086C, YDR452W, YGL252C, YHL032C, YIL162W, YOL058W, YOR239W, YOR243C, YPL189W, YPL252C, YBR177C, YBR241C, YLR040C, YLR420W, YNL259C, YOR393W, YBL098W, YCL066W, YHR005C-A, YKR086W, YNL066W, YOR210W, YPL251W, YEL059C-A, YGL028C, YGR137W, YKL120W, YLR041W, YOR084W, YBL063W, YCR097W, YDL052C, YFL026W, YHR071W, YHR072W-A, YKL032C, YLR322W, YMR120C, YOL122C, YOL126C, YDR322C-A, YER095W, YER070W, YGL089C, YIL066C, YMR300C, YDR174W, YDR481C, YFL023W, YFR020W, YIR016W, YLR383W, YLR355C, YPL281C, YPR035W, YER040W, YJL196C, YJR004C, YKL216W, YLR139C, YNR044W, YDR056C, YDR460W, YHL036W, YHR018C, YHL009W-A, YLR299W, YLR303W, YMR006C, YOR247W, YAL062W, YAR053W, YDR274C, YHR200W, YKL103C, YLR050C, YOR063W, YDR027C, YGL253W, YJR103W, YLR267W, YLR302C, YNL104C, YPL198W, YGL032C, YHR135C, YHR203C, YKL069W, YLR328W, YMR126C, YPR012W, YOR034C, YCL009C, YGR204W, YGR274C, YIL074C, YJR009C, YKL164C, YLR148W, YLR150W, YLR180W, YMR276W, YNL012W, YMR310C, YNL327W, YNR055C, YOR121C, YPL104W, YPR201W, YJL207C, YDL055C, YDR119W, YDR151C, YFL062W, YGR086C, YHR108W, YKL004W, YLR359W, YLR390W-A, YMR094W, YMR155W, YMR158W, YOL097C, YOL163W, YPR069C, YPR041W, YIL043C, YKL163W, YNL007C	DAL80	"A | 0.013 0.910 0.012 0.788 0.941 0.033 0.680 0.285 0.565 
C | 0.018 0.016 0.012 0.005 0.004 0.083 0.152 0.092 0.097 
G | 0.962 0.067 0.002 0.056 0.049 0.859 0.145 0.132 0.150 
T | 0.007 0.007 0.974 0.151 0.006 0.025 0.023 0.491 0.188 
"
GSM1	YJL103C	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	CCGGA	0.0006544831	3.68	8.51892	7.18	"Putative zinc cluster protein of unknown function; proposed to be involved in the regulation of energy metabolism, based on patterns of expression and sequence analysis
"	No Data	No Data	AFT2, GIS1, MIG3, MSN2, MSN4, PDR3, PDR8, PHD1, RGM1, RGT1, RSC3, STP1, SUT1, SUT2, USV1, YPR196W	"A | 0.020 0.010 0.010 0.050 0.580 
C | 0.940 0.970 0.070 0.010 0.070 
G | 0.020 0.010 0.910 0.930 0.260 
T | 0.020 0.010 0.010 0.010 0.090 
"
GTS1	YGL181W, LSR1, FHT1	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	TACCAA	0.000502003	7.3	8.80961	7.3	"Arf3p GTPase Activating Protein (GAP) that localizes to endocytic patches; gts1 mutations affect budding, cell size, heat tolerance, sporulation, life span, ultradian rhythms; localizes to nucleus and induces flocculation when overexpressed
"	YAL022C, YAL064C-A, YAL065C, YAL067C, YAL068C, YBR060C, YBR099C, YBR159W, YBR201W, YBR273C, YBR274W, YCR018C-A, YCR019W, YDL098C, YDL179W, YDR093W, YDR094W, YDR223W, YDR226W, YDR282C, YDR284C, YDR285W, YDR366C, YDR368W, YDR372C, YDR373W, YDR507C, YDR509W, YEL018W, YEL019C, YEL037C, YEL055C, YER138C, YER164W, YER166W, YFL011W, YFR001W, YFR021W, YFR023W, YFR036W, YFR037C, YFR038W, YFR039C, YFR040W, YFR044C, YFR045W, YGL240W, YGL241W, YGL242C, YGL245W, YGL246C, YGR017W, YGR027C, YGR033C, YGR034W, YGR038C-B, YGR084C, YGR090W, YGR126W, YGR290W, YHL034C, YHR077C, YHR078W, YHR079C, YHR138C, YKL004W, YKL005C, YKL006C-A, YKL006W, YKL033W, YLL043W, YLL045C, YLR035C-A, YLR346C, YLR428C, YLR430W, YMR067C, YMR068W, YMR118C, YMR166C, YMR167W, YNL025C, YNL111C, YNL167C, YNR034W-A, YNR074C, YNR075W, YOL041C, YOL086C, YOL088C, YOL127W, YOL128C, YOL129W, YOR192C, YOR290C, YOR291W, YPL018W, YPL019C, YPR004C, YPR048W, YPR049C, YPR051W	YDR064W, YIL148W, YJR085C, YJR054W, YNR061C, YPL211W, YLR106C, YMR109W, YDL130W, YGL013C, YLR467W, YMR192W, YNL243W, YBL112C, YDR034C-A, YDR034C-D, YDR365W-B, YER140W, YGL168W, YGL172W, YGL204C, YIL082W, YIL113W, YKR009C, YKR040C, YLR217W, YMR009W, YML117W, YMR046C, YNL021W, YOR254C, YOR192C-B, YOR256C, YPL240C, YMR266W, YDL061C, YHR145C, YLR466W, YPL016W, YOL142W, YPR052C, YPL283C, YGL071W, YLR152C, YNL301C, YNL339C, YPL142C, YPL084W, YBR093C, YCR081W, YDR526C, YDR465C, YGR028W, YGR034W, YLR304C, YLR367W, YOR086C, YBR252W, YDR281C, YER057C, YLR183C, YML022W, YML084W, YML058W, YGR296W, YHL050C, YIL156W, YJR094W-A, YOL051W, YAL044C, YAL046C, YJL121C, YKL056C, YLR098C, YMR202W, YOR043W, YPL059W, YOR262W, YOR234C, YPL246C, YPL218W, YLR035C-A, YLR437C, YOR390W, YDR134C, YLR344W, YOR142W-A, YDL038C, YDL040C, YFL050C, YLR345W, YNL118C, YOR326W, YPR053C, YPR055W, YMR292W, YNR001C, YGL062W, YCR024C-A, YDR418W, YLR259C, YLR230W, YLR264W, YNL069C, YOL002C, YEL026W, YKL058W, YLR110C, YBL101W-A, YDR417C, YHL001W, YJR063W, YLR229C, YML130C, YMR058W, YNL037C, YPL220W, YPL251W, YDL081C, YDL083C, YDL145C, YHR128W, YLR073C, YLR043C, YMR237W, YPL061W, YHR072W-A, YJL034W, YJL004C, YKL033W-A, YOL120C, YOL092W, YER072W, YHR219W, YPL094C, YPL098C, YOL119C, YPR063C, YER044C, YJL160C, YLR201C, YNR046W, YOL008W, YOL039W, YOR251C, YEL027W, YNL201C, YEL065W, YHR136C, YMR186W, YOR027W, YPL041C, YCR028C-A, YCR031C, YFL002W-B, YGL255W, YIL133C, YMR034C, YNL070W, YNL043C, YOL040C, YPL257W-B, YPL234C, YBR210W, YDR210W-A, YGL030W, YGR143W, YHR135C, YOR090C, YPL075W, YPR158W-B, YDR122W, YFL067W, YGR027C, YIR022W, YKL006W, YLR017W, YNL135C, YOR343C-B, YPR044C, YBL051C, YCL040W, YIL040W, YIL011W, YLR146C, YFL068W, YMR123W, YOL101C, YOR370C, YOR343C-A, YOR374W, YPR037C, YGR203W, YIL069C, YKR001C	None	"A | 0.150 0.997 0.001 0.001 0.836 0.988 
C | 0.001 0.001 0.734 0.975 0.009 0.001 
G | 0.001 0.001 0.036 0.001 0.154 0.010 
T | 0.848 0.001 0.229 0.023 0.001 0.001 
"
GZF3	YJL110C, NIL2, DEH1	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	TGATAAG	0.0021433461	3.99	8.59469	7.76	"GATA zinc finger protein and Dal80p homolog that negatively regulates nitrogen catabolic gene expression by competing with Gat1p for GATA site binding; function requires a repressive carbon source; dimerizes with Dal80p and binds to Tor1p
"	YBR232C, YCL074W, YCR082W, YCR091W, YCR105W, YDL077C, YDR080W, YDR117C, YDR118W, YDR210W-D, YDR282C, YDR355C, YDR494W, YEL031W, YER002W, YER047C, YFR026C, YGL001C, YGL156W, YGL171W, YGR089W, YGR218W, YHL048W, YHR074W, YHR118C, YHR119W, YHR120W, YJL203W, YJL204C, YJR125C, YKL136W, YKL143W, YKL144C, YKL204W, YKR022C, YKR023W, YKR105C, YKR106W, YLL047W, YLL048C, YLR083C, YLR127C, YLR128W, YLR265C, YLR339C, YLR341W, YLR456W, YMR268C, YMR269W, YMR287C, YMR288W, YNR068C, YOL160W, YOR021C, YOR090C, YOR091W, YPL180W, YPL182C, YPL215W, YPR081C, YPR092W, YPR121W, YPR197C	YHL016C, YKR039W, YOR065W, YFR033C, YPL016W, YPR138C, YIR032C, YML027W, YML089C, YOR129C, YBR093C, YNL142W, YDR281C, YMR253C, YMR023C, YLR099C, YOR074C, YNL183C, YOL144W, YER038C, YHR215W, YFL021W, YOL143C, YAR071W, YCL025C, YFL001W, YLR420W, YNL223W, YNL289W, YGL249W, YHR128W, YEL002C, YOL126C, YDR481C, YBL042C, YKL216W, YGL228W, YMR002W, YNL105W, YHR136C, YGL255W, YJL110C, YDR524C, YNL141W, YOL101C	DAL80	"A | 0.180 0.010 0.970 0.010 0.970 0.720 0.040 
C | 0.390 0.010 0.010 0.010 0.010 0.090 0.370 
G | 0.020 0.970 0.010 0.010 0.010 0.010 0.580 
T | 0.410 0.010 0.010 0.970 0.010 0.180 0.010 
"
HAC1	YFL031W, IRE15, ERN4	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	AGGACACGTA	7.557512e-16	10.07	14.9271	12.53	"Basic leucine zipper (bZIP) transcription factor (ATF/CREB1 homolog) that regulates the unfolded protein response, via UPRE binding, and membrane biogenesis; ER stress-induced splicing pathway facilitates efficient Hac1p synthesis
"	YBL025W, YBR012W-A, YBR012W-B, YBR099C, YBR213W, YCR018C-A, YCR019W, YCR033W, YDL069C, YDL118W, YDL146W, YDR040C, YDR041W, YDR042C, YDR084C, YDR210W-D, YDR217C, YDR540C, YER007C-A, YER129W, YER138C, YFR007W, YFR026C, YFR041C, YFR042W, YGL214W, YGR161W-A, YGR161W-B, YHR044C, YHR045W, YIL048W, YIL139C, YJL034W, YJL035C, YJL175W, YKL071W, YKL165C, YKL177W, YKL179C, YKR061W, YLR404W, YMR178W, YNL044W, YOL023W, YOL030W, YOL031C, YOL115W, YOR058C, YOR143C	YBL097W, YDR215C, YFL013W-A, YBR093C, YDR281C, YLR312W-A, YFL031W, YBR105C, YKL214C, YGR164W, YGR168C, YGR111W, YHR132C, YPR068C, YFL032W, YMR034C	PHO4, SWI6	"A | 0.794 0.091 0.152 0.544 0.001 0.958 0.001 0.001 0.152 0.895 
C | 0.001 0.001 0.001 0.411 0.997 0.001 0.997 0.001 0.001 0.001 
G | 0.001 0.495 0.846 0.001 0.001 0.001 0.001 0.997 0.001 0.001 
T | 0.204 0.414 0.001 0.044 0.001 0.040 0.001 0.001 0.846 0.103 
"
HAL9	YOL089C	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	TCCGAAAAAAAAAGCGGA	0.3035916	9.01	13.0454	15.06	"Putative transcription factor containing a zinc finger; overexpression increases salt tolerance through increased expression of the ENA1 (Na+/Li+ extrusion pump) gene while gene disruption decreases both salt tolerance and ENA1 expression
"	YCR018C-A, YCR019W, YCR024C, YCR096C, YCR102C, YDL068W, YDL071C, YDR003W, YDR034C-A, YDR042C, YDR078C, YDR079W, YDR084C, YDR086C, YDR098C-A, YDR098C-B, YDR144C, YDR145W, YDR210W-D, YDR434W, YDR495C, YDR520C, YER001W, YER013W, YER044C-A, YER071C, YER072W, YER135C, YGL001C, YGR050C, YGR071C, YGR072W, YGR218W, YGR241C, YGR243W, YGR271W, YGR273C, YGR283C, YHR011W, YHR179W, YIL014W, YJL148W, YJL191W, YJL192C, YJL203W, YJL204C, YJR011C, YJR051W, YKL062W, YKL063C, YLR046C, YLR050C, YLR054C, YLR212C, YLR261C, YLR262C, YLR428C, YLR430W, YLR460C, YMR019W, YMR098C, YMR258C, YMR272C, YNL038W, YNL050C, YNL134C, YNL292W, YNL337W, YOL084W, YOL085C, YOL159C, YOR021C, YOR058C, YPL106C, YPL170W, YPL171C, YPL188W, YPL216W, YPL217C, YPR198W	YOR225W, YGL009C, YMR011W, YOR226C, YPL177C, YLR460C, YLL028W, YLL034C, YDR314C, YHR208W, YHR183W, YMR136W, YMR238W, YDR072C, YDR410C, YGL209W, YAL041W, YGL021W, YLR100W, YPL055C, YIL121W, YOR230W, YJR148W, YER001W, YLR101C, YNL220W, YBR102C, YHR089C, YPL008W, YDL198C, YLR128W, YML091C, YMR291W, YFL014W, YLR349W, YMR083W, YDR048C, YDR024W, YDR386W, YKR093W, YMR059W, YBR177C, YKL062W, YOL059W, YJR127C, YKL120W, YDL048C, YDR116C, YJL034W, YMR272C, YLR355C, YNL160W, YOL089C, YOL119C, YPR135W, YER044C, YIL172C, YOR245C, YDR274C, YLR296W, YMR034C, YMR036C, YNL234W, YCR102C, YDR155C, YGR052W, YOL101C, YCL006C, YJR008W	None	"A | 0.010 0.040 0.010 0.010 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.130 0.061 0.060 0.010 0.743 
C | 0.059 0.910 0.840 0.030 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.310 0.899 0.090 0.040 0.188 
G | 0.188 0.040 0.090 0.899 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.430 0.030 0.840 0.910 0.059 
T | 0.743 0.010 0.060 0.061 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.130 0.010 0.010 0.040 0.010 
"
HAP1	YLR256W, CYP1	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	GGAAATATCGG	2.298235e-34	8.27	10.536	10.94	"Zinc finger transcription factor involved in the complex regulation of gene expression in response to levels of heme and oxygen; the S288C sequence differs from other strain backgrounds due to a Ty1 insertion in the carboxy terminus
"	YAL039C, YAR050W, YBL043W, YBL044W, YBL045C, YBL095W, YBR015C, YBR016W, YBR083W, YCL036W, YCL037C, YCR061W, YCR062W, YDL017W, YDL018C, YDL037C, YDL086W, YDL087C, YDL110C, YDL173W, YDL174C, YDR218C, YDR233C, YDR234W, YDR252W, YDR256C, YDR284C, YDR285W, YDR490C, YDR492W, YDR504C, YDR505C, YDR529C, YDR543C, YDR544C, YDR545W, YEL024W, YEL025C, YEL033W, YEL034W, YEL035C, YEL036C, YEL038W, YEL039C, YER001W, YER044C, YER048C, YER053C, YER141W, YER145C, YER146W, YER189W, YER190W, YFL010W-A, YFL045C, YFL058W, YFR033C, YGL001C, YGL055W, YGL056C, YGL160W, YGL161C, YGL187C, YGL191W, YGL193C, YGL228W, YGL229C, YGR035C, YGR049W, YGR060W, YGR088W, YGR110W, YGR175C, YGR176W, YGR177C, YGR183C, YGR234W, YGR248W, YGR249W, YGR264C, YGR266W, YGR296W, YHL024W, YHR001W-A, YHR005C-A, YHR007C, YHR051W, YHR091C, YHR190W, YIL155C, YIL177C, YIR002C, YIR003W, YJL048C, YJL100W, YJL101C, YJR047C, YJR048W, YJR104C, YJR105W, YKL019W, YKL020C, YKL051W, YKL052C, YKL096W-A, YKL097C, YKL109W, YKL182W, YKL217W, YKR040C, YKR042W, YKR046C, YKR047W, YKR087C, YLL033W, YLL034C, YLR049C, YLR099C, YLR100W, YLR108C, YLR109W, YLR110C, YLR111W, YLR112W, YLR139C, YLR142W, YLR153C, YLR154C, YLR205C, YLR206W, YLR213C, YLR214W, YLR228C, YLR255C, YLR256W, YLR256W-A, YLR325C, YLR326W, YLR342W, YLR395C, YLR410W-A, YLR410W-B, YLR463C, YLR465C, YLR467W, YML007W, YML008C, YML028W, YML036W, YML037C, YML052W, YML053C, YML054C, YML075C, YML076C, YML116W, YML126C, YMR015C, YMR037C, YMR056C, YMR070W, YMR134W, YMR135W-A, YMR145C, YMR201C, YMR202W, YMR220W, YMR238W, YMR251W-A, YMR256C, YMR272C, YMR282C, YMR302C, YNL009W, YNL052W, YNL101W, YNL111C, YNL155W, YNL156C, YNL231C, YNL237W, YNL332W, YNL337W, YNL338W, YNL339C, YNR016C, YNR017W, YNR019W, YNR041C, YNR043W, YNR060W, YOL027C, YOL028C, YOL109W, YOL113W, YOL114C, YOR018W, YOR064C, YOR065W, YOR317W, YOR348C, YOR349W, YOR356W, YPL028W, YPL116W, YPL117C, YPL218W, YPL231W, YPL283C, YPR013C, YPR063C, YPR064W, YPR065W, YPR149W, YPR151C	No Data	RSF2	"A | 0.021 0.017 0.445 0.462 0.480 0.042 0.738 0.138 0.011 0.040 0.014 
C | 0.014 0.261 0.246 0.097 0.085 0.065 0.042 0.143 0.971 0.043 0.396 
G | 0.935 0.710 0.101 0.265 0.060 0.039 0.038 0.072 0.008 0.891 0.481 
T | 0.030 0.012 0.208 0.176 0.374 0.853 0.183 0.647 0.010 0.026 0.109 
"
HAP2	YGL237C	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	CCAATGAG	9.495952e-09	6.86	8.9252	8.72	"Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; contains sequences sufficient for both complex assembly and DNA binding
"	YBR025C, YBR039W, YBR243C, YBR244W, YCR099C, YCR100C, YDL060W, YDL061C, YDL063C, YDR042C, YDR088C, YDR377W, YDR417C, YDR419W, YDR529C, YEL024W, YEL025C, YEL047C, YER174C, YFL059W, YFL060C, YFR003C, YFR004W, YGL134W, YGL187C, YGR084C, YGR183C, YGR234W, YGR256W, YHR001W-A, YHR005C-A, YHR051W, YHR181W, YIL070C, YJL148W, YJL191W, YJL192C, YJR077C, YJR078W, YJR079W, YLL027W, YLR027C, YLR220W, YLR292C, YLR345W, YLR354C, YLR368W, YML119W, YML120C, YNL066W, YNL214W, YOL026C, YOL121C, YOR154W, YOR223W, YOR236W, YOR268C, YOR269W, YOR339C, YPL018W, YPL019C, YPL130W, YPL207W, YPR200C, YPR201W	YBL113C, YBL090W, YDR064W, YDR404C, YGL199C, YGL234W, YIL078W, YIL148W, YJR048W, YJR018W, YJR085C, YJR022W, YKR012C, YLR214W, YLR274W, YLR248W, YLR250W, YMR012W, YNL016W, YNL081C, YNL052W, YNL085W, YOL012C, YOR225W, YOR257W, YOR227W, YPL174C, YPL176C, YPL207W, YLR106C, YNL131W, YAR002C-A, YBR158W, YBR191W, YDL064W, YDL130W, YDL131W, YFR032C-A, YGL009C, YHR143W, YHR117W, YJL055W, YJL119C, YLR088W, YLR060W, YLR062C, YLR463C, YLR404W, YLR406C, YLR467W, YMR222C, YMR194W, YMR226C, YNL211C, YNL243W, YOR033C, YOR377W, YPL047W, YPL019C, YCR057C, YDR135C, YDR207C, YDR301W, YBL112C, YBL087C, YBR005W, YBR035C, YCL054W, YDR037W, YER113C, YER117W, YER146W, YGL166W, YGL198W, YGL200C, YGL231C, YHL047C, YJR086W, YKR072C, YKR013W, YLR213C, YLR277C, YLR249W, YMR009W, YMR040W, YMR011W, YNL049C, YOL014W, YOL046C, YOR220W, YOR192C, YOR254C, YOR224C, YOR256C, YOR226C, YPL208W, YPL240C, YPL210C, YDR039C, YCR097W-A, YML010W-A, YAL008W, YDL061C, YDL125C, YDL063C, YDL067C, YEL013W, YEL017C-A, YFR035C, YGR090W, YGR094W, YHR142W, YHR143W-A, YHR175W, YHR147C, YJL080C, YJL118W, YLR057W, YLR089C, YLR028C, YLR061W, YLR093C, YLR401C, YLR433C, YLR464W, YLR466W, YMR225C, YNL238W, YNL208W, YNL210W, YNL244C, YOR038C, YPL046C, YPL016W, YPR140W, YAL035W, YDR050C, YDR351W, YBR062C, YBR096W, YCR082W, YDL037C, YDR100W, YDR462W, YDR525W-A, YGR061C, YGR063C, YGR065C, YHR027C, YHR057C, YJR143C, YJR147W, YJR118C, YLR305C, YLR336C, YLR370C, YLR374C, YMR071C, YNL147W, YNL149C, YOL075C, YOL142W, YOR285W, YOR317W, YOR289W, YOR321W, YPR050C, YPR020W, YPR052C, YNR065C, YPL036W, YPL235W, YPL283C, YBR253W, YDL192W, YDR276C, YDR341C, YER056C-A, YER086W, YGL071W, YGL103W, YGR182C, YGR218W, YIL016W, YIL052C, YJL151C, YKL141W, YKL205W, YLR152C, YLR182W, YLR154C, YLR188W, YML056C, YMR286W, YMR256C, YMR290C, YNL301C, YNR026C, YNL305C, YNR030W, YNL339C, YNR032C-A, YPL142C, YPL144W, YPL084W, YJL050W, YBR091C, YDL004W, YDR157W, YFL038C, YFR006W, YGR030C, YGR034W, YGR064W, YIR033W, YJR113C, YKL013C, YLL029W, YKR106W, YLL031C, YLR306W, YLR371W, YLR310C, YMR100W, YMR131C, YMR072W, YMR074C, YNL176C, YOL073C, YOL076W, YOL109W, YOL141W, YOR286W, YOR316C, YOR346W, YOR318C, YOR320C, YPR017C, YPL271W, YPR051W, YOR086C, YNL287W, YBL024W, YBL026W, YBR282W, YBR252W, YBR254C, YDL191W, YER025W, YER083C, YER057C, YER087C-A, YGL070C, YGL102C, YGR211W, YGR243W, YGR181W, YGR245C, YGR183C, YGR215W, YHR205W, YIL047C, YIL049W, YHR211W, YIL051C, YJL146W, YJL178C, YKL138C, YKL169C, YKL140W, YKL142W, YKL173W, YLR121C, YLR153C, YLR155C, YLR185W, YLR157C, YML024W, YML055W, YML084W, YML086C, YML028W, YML058W, YMR251W-A, YNL300W, YNL302C, YNL306W, YOR096W, YPL141C, YPL143W, YPL115C, YGR296W, YBL091C-A, YBR010W, YCR046C, YDR378C, YDR410C, YER123W, YGL242C, YHL050C, YHR001W-A, YJR024C, YJR058C, YJR094W-A, YLR222C, YLR286C, YLR287C-A, YMR022W, YNL087W, YNL056W, YNL089C, YNL091W, YNL030W, YNL061W, YOL051W, YNR067C, YOL021C, YOL052C-A, YOR263C, YOR265W, YPL183W-A, YPL217C, YLR131C, YMR129W, YAL044C, YAL046C, YDL072C, YDL134C, YDR224C, YGR162W, YKL053C-A, YKL084W, YLR096W, YLR066W, YLR098C, YLR410W, YMR173W, YNL247W, YNL281W, YNL219C, YOR009W, YOR011W, YOR043W, YOR045W, YOR015W, YPL023C, YOR387C, YPL059W, YPL160W, YBR009C, YCR049C, YDR011W, YDR077W, YER150W, YER152C, YER124C, YER154W, YHL049C, YGR285C, YIL117C, YIL087C, YJR023C, YJR025C, YKR082W, YLR223C, YMR049C, YNL023C, YNL059C, YNR066C, YOR260W, YOR198C, YOR264W, YPL183C, YPL184C, YPL218W, YPL249C-A, YJR148W, YLL008W, YAL014C, YAL045C, YBR162W-A, YBR230C, YDL135C, YDL075W, YDL137W, YDR225W, YHR181W, YJL122W, YLR034C, YLR065C, YLR437C, YLR409C, YMR229C, YOR014W, YBR070C, YBR076W, YBR106W, YDR134C, YDR535C, YGR037C, YGR041W, YHR093W, YIR036C, YJR155W, YLR001C, YLL009C, YLR344W, YLR350W, YMR080C, YMR113W, YNL183C, YNL123W, YNL157W, YNL189W, YOL144W, YOL146W, YOL150C, YOR293W, YOR297C, YOR327C, YOR357C, YPR022C, YPR024W, YPR028W, YNR016C, YPR010C, YBL003C, YBL064C, YCL030C, YDR286C, YHR217C, YKL180W, YKL151C, YKL182W, YLR158C, YLR190W, YLR160C, YLR194C, YML034W, YML093W, YMR264W, YMR294W-A, YNR033W, YNL311C, YNL313C, YNR037C, YPL086C, YPL088W, YPL092W, YPL124W, YHR165C, YBR075W, YBR137W, YDL040C, YDL012C, YDR139C, YDR471W, YFL017W-A, YFL021W, YHR028C, YHR064C, YIR035C, YIR037W, YJR121W, YLR002C, YLR375W, YLR347C, YMR108W, YMR112C, YNL118C, YNL150W, YNL182C, YNL184C, YOL143C, YOL145C, YOR322C, YOR324C, YOR354C, YOR326W, YOR298C-A, YPR053C, YPR055W, YJL130C, YPL137C, YLL023C, YBL002W, YBR262C, YDL229W, YDL167C, YDR346C, YER035W, YGL080W, YIL027C, YJL152W, YJL184W, YJL154C, YJL158C, YKL212W, YKL214C, YLR189C, YLR129W, YLR193C, YML059C, YML092C, YML035C, YML094W, YML036W, YML095C-A, YMR292W, YMR319C, YMR295C, YNL310C, YNR036C, YNR038W, YOR108W, YPL149W, YBR014C, YBR016W, YBR052C, YCR024C-A, YDR086C, YDR382W, YDR418W, YER131W, YGL189C, YHR010W, YIL158W, YIL130W, YKR057W, YKR061W, YLR228C, YLR230W, YLR262C-A, YLR264W, YLR295C, YML133C, YNL095C, YNL069C, YPL252C, YPL225W, YPL256C, YAL021C, YBR173C, YDR234W, YDR264C, YDR238C, YDR266C, YEL026W, YER009W, YHR162W, YJL065C, YJL097W, YKL058W, YKL096W, YLR040C, YLR104W, YLR042C, YLR110C, YLR414C, YML010C-B, YLR449W, YLR451W, YMR236W, YMR242C, YPL066W, YPL037C, YEL054C, YCR060W, YDR025W, YDR447C, YDR417C, YER190W, YGL245W, YHR005C-A, YHL001W, YIL157C, YJR063W, YJR069C, YLR229C, YLR292C, YMR054W, YMR058W, YNL031C, YNL094W, YNL066W, YNL068C, YNL100W, YOL026C, YOL057W, YOL063C, YOR236W, YOR206W, YOR270C, YOR240W, YOR210W, YPL220W, YPL251W, YPL190C, YPL226W, YJR041C, YAR027W, YBR238C, YDL081C, YDL083C, YDL145C, YGL054C, YFR049W, YGL028C, YGR139W, YJL064W, YJL068C, YKL057C, YKL061W, YLR071C, YLR041W, YLR043C, YLR109W, YLR413W, YML009C, YML010W, YLR448W, YML011C, YMR173W-A, YMR205C, YMR237W, YMR177W, YNL256W, YNL258C, YOR048C, YOR020C, YOR052C, YPL030W, YPL032C, YPL063W, YPL067C, YPR154W, YBR082C, YDL046W, YDR510W, YHR037W, YHR042W, YHR072W-A, YJL004C, YJR132W, YKL001C, YKL003C, YKL033W-A, YLL050C, YLR320W, YLR384C, YLR356W, YLR388W, YLR390W, YMR119W, YMR120C, YNL197C, YOL090W, YOL120C, YOL158C, YOR361C, YOR335C, YOR337W, YPR032W, YBR269C, YDR322C-A, YER070W, YER072W, YGL087C, YGR260W, YGR264C, YGR234W, YHR219W, YIL030C, YIL062C, YKL157W, YLR166C, YLR198C, YLR138W, YLR140W, YLR204W, YML072C, YML101C, YMR298W, YMR300C, YMR302C, YNR010W, YNR012W, YNL321W, YPL094C, YPL126W, YPL158C, YPL098C, YBR077C, YBR079C, YBR109C, YBR143C, YDL045W-A, YDR111C, YDR115W, YDR178W, YDR481C, YDR513W, YGR044C, YGR020C, YHR100C, YJL001W, YJL003W, YKL027W, YLL014W, YLR010C, YLL018C, YLL049W, YLR325C, YLR389C, YMR085W, YMR088C, YMR150C, YNL162W, YNL132W, YOL119C, YOL151W, YOL121C, YOR330C, YOR360C, YOR304W, YOR336W, YPR031W, YPR063C, YPR033C, YPR067W, YBL040C, YBR268W, YCL033C, YCL035C, YDR324C, YER044C, YGL120C, YGR261C, YHR218W, YJL225C, YJL166W, YKL156W, YLR197W, YLR167W, YLR201C, YML038C, YML073C, YML102C-A, YMR301C, YNL003C, YNR044W, YNL322C, YNR046W, YPL093W, YPL125W, YPL095C, YPL163C, YER091C, YBL107C, YDR454C, YDR396W, YJR104C, YJR044C, YKR065C, YLR297W, YLR268W, YMR002W, YMR035W, YMR006C, YMR037C, YNL044W, YOL004W, YOL066C, YOL068C, YOL039W, YOL070C, YOR277C, YOR215C, YOR247W, YPL231W, YEL027W, YAL033W, YDL148C, YEL065W, YER019C-A, YEL038W, YGL031C, YGR146C, YGR176W, YHR136C, YHR170W, YHR141C, YHR204W, YJL077C, YJL111W, YJL143W, YLR050C, YLR114C, YLR116W, YLR118C, YLR424W, YLR455W, YMR212C, YMR184W, YMR245W, YMR186W, YMR216C, YNL235C, YNL297C, YOR027W, YPL043W, YPL045W, YCR028C-A, YCR003W, YCR031C, YCR071C, YER136W, YER165W, YFL004W, YFL006W, YHL039W, YIL133C, YKR094C, YKR068C, YMR001C, YMR062C, YMR003W, YMR034C, YMR064W, YNL070W, YNL104C, YNL043C, YOL005C, YOL040C, YOL071W, YOR276W, YOR248W, YOR218C, YPL234C, YPL263C, YAL030W, YBR210W, YDR211W, YEL037C, YEL068C, YEL070W, YFR055W, YGL030W, YGL032C, YGL002W, YGR145W, YGR118W, YGR177C, YHR135C, YHR197W, YHR140W, YJL136C, YJL078C, YKL065C, YKL096W-A, YKL069W, YLR047C, YLR083C, YLR452C, YLR427W, YMR181C, YMR211W, YMR243C, YMR215W, YMR246W, YNL268W, YNL298W, YOR088W, YOR090C, YPL071C, YPL042C, YPL012W, YPL044C, YPL075W, YBR090C, YBR122C, YDR154C, YDR124W, YDR186C, YFL034C-A, YFL067W, YFR031C-A, YGR085C, YGR027C, YIR022W, YJR135W-A, YKL006W, YLR364W, YMR128W, YNL135C, YNL167C, YOL098C, YOL130W, YOR369C, YOR311C, YPR070W, YPR044C, YBL076C, YBL051C, YCL005W, YCL007C, YDL184C, YDR304C, YER049W, YER110C, YGL127C, YGR204W, YGR240C, YIL008W, YIL009W, YIL040W, YKL192C, YML078W, YML108W, YML081W, YMR305C, YMR278W, YMR308C, YNL014W, YNR018W, YNR049C, YNL327W, YNR051C, YNL329C, YNR055C, YPL170W, YBR121C, YDR119W, YFL064C, YFL066C, YFL068W, YGR082W, YGR024C, YHR047C, YHR077C, YHR108W, YJL044C, YKL006C-A, YLR390W-A, YLR361C, YLR395C, YLR333C, YLR397C, YMR123W, YMR125W, YNL140C, YOL127W, YOL159C, YOL129W, YOL103W, YOL133W, YOL165C, YOR306C, YOR308C, YOR370C, YOR310C, YOR312C, YPR037C, YPR043W, YPR172W, YBL077W, YBL018C, YDR303C, YDR363W-A, YDR305C, YER048W-A, YGR203W, YGR209C, YIL069C, YJL200C, YJR010C-A, YKR001C, YLR207W, YLR147C, YML077W, YML079W, YML081C-A, YMR279C, YMR309C, YNL328C, YOR182C, YPL105C	RDS1, RSC3, SUT1	"A | 0.001 0.053 0.846 0.997 0.001 0.142 0.794 0.358 
C | 0.882 0.945 0.001 0.001 0.063 0.297 0.001 0.164 
G | 0.001 0.001 0.099 0.001 0.056 0.365 0.102 0.375 
T | 0.116 0.001 0.054 0.001 0.880 0.197 0.103 0.103 
"
HAP3	YBL021C	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	TCTGATTGGTTCAG	3.345743e-12	9.34	15.0262	14.7	"Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; contains sequences contributing to both complex assembly and DNA binding
"	YBR039W, YBR216C, YBR217W, YCR028C, YDL045C, YDL170W, YDL171C, YDR030C, YDR031W, YDR084C, YDR130C, YDR146C, YDR147W, YDR282C, YDR292C, YDR372C, YDR373W, YDR377W, YDR503C, YEL004W, YEL005C, YER049W, YER174C, YER175C, YER176W, YER183C, YFR023W, YGL133W, YGL187C, YGL191W, YGL193C, YGL195W, YGR084C, YGR187C, YGR191W, YGR234W, YHR001W-A, YHR028C, YHR044C, YHR045W, YHR051W, YJL023C, YJL060W, YJL096W, YJL097W, YJL145W, YJL148W, YJR077C, YJR078W, YJR079W, YJR082C, YJR100C, YKL039W, YKL040C, YKL072W, YKR103W, YLL027W, YLR211C, YLR220W, YML077W, YML119W, YML120C, YMR065W, YMR125W, YMR126C, YMR258C, YNL009W, YNL232W, YNR006W, YNR054C, YOL023W, YOL105C, YOR106W, YOR112W, YOR138C, YOR140W, YOR258W, YPL207W, YPR158W-A, YPR158W-B, YPR197C	YCR016W, YMR220W, YPL053C, YHR179W, YPL016W, YBR093C, YCL018W, YDR281C, YDR442W, YJR148W, YDR506C, YHR215W, YFL014W, YGL214W, YKL120W, YER072W, YER040W, YIL067C, YKL218C, YHR136C, YLR269C, YBR244W, YBR248C, YEL037C, YHR135C, YNL292W, YDL060W, YOR374W, YCL006C, YGL094C	None	"A | 0.005 0.120 0.005 0.032 0.984 0.005 0.005 0.005 0.005 0.005 0.032 0.260 0.489 0.359 
C | 0.181 0.675 0.161 0.304 0.005 0.005 0.005 0.005 0.005 0.484 0.400 0.379 0.089 0.089 
G | 0.190 0.098 0.005 0.502 0.005 0.005 0.005 0.984 0.984 0.005 0.140 0.332 0.309 0.442 
T | 0.624 0.107 0.828 0.163 0.005 0.984 0.984 0.005 0.005 0.505 0.429 0.030 0.112 0.111 
"
HAP4	YKL109W	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	GACCAATCA	1.9839753e-21	8.11	7.99886	9.73	"Subunit of the heme-activated, glucose-repressed Hap2p/3p/4p/5p CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; provides the principal activation function of the complex
"	YBL001C, YBL030C, YBL044W, YBL045C, YBL099W, YBL109W, YBL111C, YBL112C, YBL113C, YBR039W, YBR048W, YBR099C, YCL065W, YCL066W, YCL067C, YCR039C, YCR040W, YCR041W, YCR105W, YDL004W, YDL005C, YDL066W, YDL067C, YDL181W, YDR042C, YDR148C, YDR150W, YDR210W-D, YDR298C, YDR299W, YDR377W, YDR473C, YDR474C, YDR529C, YDR543C, YDR544C, YDR545W, YEL001C, YEL008W, YEL009C, YEL024W, YEL025C, YFL001W, YFL002C, YFR001W, YFR033C, YGL001C, YGL103W, YGL104C, YGL187C, YGL191W, YGL193C, YGR183C, YGR296W, YHL049C, YHR001W, YHR001W-A, YHR002W, YHR003C, YHR051W, YHR052W, YHR091C, YHR193C, YHR194W, YIL174W, YIL175W, YJL191W, YJL192C, YJR001W, YJR077C, YJR078W, YJR079W, YJR082C, YJR121W, YKL015W, YKL016C, YKL146W, YKL148C, YLL065W, YLR038C, YLR166C, YLR167W, YLR168C, YLR169W, YLR171W, YLR207W, YLR294C, YLR295C, YLR296W, YLR395C, YLR463C, YLR465C, YLR467W, YML081W, YML088W, YML089C, YML091C, YML119W, YML120C, YML132W, YML133C, YMR194W, YMR256C, YNL052W, YNL054W-A, YNL054W-B, YNL055C, YNL070W, YNL337W, YNL338W, YNL339C, YOL001W, YOL002C, YOR064C, YOR065W, YOR187W, YPL251W, YPL253C, YPL270W, YPL271W, YPL283C, YPR020W, YPR190C, YPR191W, YPR202W, YPR203W	YBR158W, YHR143W, YOR065W, YGL168W, YPL240C, YHR051W, YHR053C, YHR055C, YJR147W, YKL016C, YNL143C, YPL078C, YFR016C, YFR006W, YLL065W, YIL156W, YLR286C, YNR067C, YOR263C, YLR131C, YER152C, YER124C, YJR025C, YLR285W, YOR230W, YOR264W, YJR148W, YKR023W, YDR106W, YFL051C, YGR041W, YOR298W, YPL195W, YDL200C, YML091C, YPL092W, YFL021W, YMR110C, YNR001C, YIR015W, YKR093W, YLR042C, YPL066W, YMR027W, YNL066W, YOL028C, YGL028C, YMR173W-A, YPL063W, YHR037W, YIR019C, YOR367W, YOL119C, YHR018C, YMR186W, YOR027W, YOR059C, YDR425W, YGL255W, YMR062C, YBR244W, YKL067W, YLR079W, YLR458W, YMR213W, YDR040C, YLR360W, YOR034C, YNL327W	RDS1, RSC3, SUT1	"A | 0.279 0.358 0.055 0.040 0.909 0.896 0.077 0.130 0.905 
C | 0.103 0.247 0.852 0.687 0.024 0.033 0.064 0.605 0.025 
G | 0.532 0.309 0.041 0.175 0.038 0.023 0.071 0.166 0.040 
T | 0.086 0.085 0.052 0.098 0.029 0.048 0.788 0.099 0.030 
"
HAP5	YOR358W	Pachkov et al	http://www.ncbi.nlm.nih.gov/pubmed/17130146	TGGGATCTGATTGGT	4.167616e-10	8.42	14.3051	14.68	"Subunit of the heme-activated, glucose-repressed Hap2/3/4/5 CCAAT-binding complex, a transcriptional activator and global regulator of respiratory gene expression; required for assembly and DNA binding activity of the complex
"	YBL074C, YBR012W-A, YBR012W-B, YBR099C, YBR128C, YBR167C, YBR168W, YCR018C-A, YCR019W, YCR054C, YCR076C, YDL013W, YDL152W, YDL170W, YDL171C, YDR048C, YDR142C, YDR210W-D, YDR245W, YDR495C, YDR503C, YDR522C, YEL050C, YER049W, YER174C, YGL001C, YGL132W, YGL187C, YGR024C, YGR263C, YGR265W, YHR011W, YHR051W, YJL003W, YJL004C, YLL027W, YLR105C, YLR168C, YLR169W, YLR171W, YLR220W, YLR435W, YMR194W, YNR050C, YOL091W, YOR005C, YPL207W	YCR040W, YGL234W, YNL016W, YOR225W, YGL009C, YLR058C, YBR031W, YMR044W, YOR226C, YGR155W, YOR066W, YOR382W, YDR096W, YHR025W, YOR285W, YOR351C, YPL187W, YER026C, YGR180C, YHR208W, YML023C, YML058W-A, YNL335W, YBR067C, YCR077C, YDR461W, YNL146W, YPR015C, YCL018W, YBR256C, YIL015W, YNL332W, YPL145C, YDR012W, YIL154C, YLR286C, YAL013W, YDL070W, YGR099W, YJR094C, YAL012W, YLR034C, YLR438W, YMR171C, YNL220W, YBR070C, YJL026W, YLR348C, YDR320C, YJL153C, YKL178C, YLR343W, YLR349W, YBL032W, YCL027W, YKL177W, YKL148C, YMR323W, YMR057C, YOL058W, YLR040C, YOR393W, YCL066W, YKL120W, YLR041W, YPL032C, YFL026W, YMR120C, YOR305W, YOR383C, YGL089C, YGR234W, YLR136C, YNL190W, YPL281C, YPR035W, YER040W, YJR004C, YNR044W, YHL004W, YHR018C, YLR299W, YLR303W, YMR006C, YMR186W, YBR053C, YLR302C, YDL121C, YGL032C, YKL069W, YKL164C, YLR180W, YNR055C, YLR359W	SKN7, SUT1	"A | 0.146 0.046 0.025 0.181 0.386 0.029 0.021 0.001 0.118 0.997 0.001 0.001 0.093 0.085 0.001 
C | 0.213 0.443 0.333 0.249 0.308 0.144 0.696 0.159 0.288 0.001 0.001 0.001 0.001 0.117 0.380 
G | 0.235 0.488 0.547 0.471 0.093 0.288 0.147 0.001 0.419 0.001 0.001 0.056 0.905 0.736 0.001 
T | 0.407 0.022 0.095 0.099 0.213 0.539 0.136 0.839 0.175 0.001 0.997 0.942 0.001 0.062 0.618 
"
HCM1	YCR065W	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	TAAACAA	0.01303045	5.17	6.98615	6.77	"Forkhead transcription factor that drives S-phase specific expression of genes involved in chromosome segregation, spindle dynamics, and budding; suppressor of calmodulin mutants with specific SPB assembly defects; telomere maintenance role
"	No Data	YPL053C, YDR371W, YDR217C, YGL042C, YKL048C, YPL016W, YLL034C, YML085C, YBR093C, YNL116W, YPL269W, YDL187C, YMR173W, YOR043W, YJR148W, YDR199W, YDR227W, YLR099C, YBR265W, YPL092W, YFL014W, YLR004C, YBL032W, YLR290C, YLR231C, YNL068C, YMR173W-A, YNL126W, YOL095C, YNR009W, YNR044W, YLR455W, YPL013C, YMR003W, YDL117W, YMR215W, YGR051C, YPR006C, YIL074C, YNR018W, YPL168W, YNL013C, YPL107W	FKH2	"A | 0.270 0.660 0.930 0.970 0.010 0.940 0.580 
C | 0.080 0.320 0.050 0.010 0.850 0.020 0.170 
G | 0.040 0.010 0.010 0.010 0.010 0.020 0.110 
T | 0.610 0.010 0.010 0.010 0.130 0.020 0.140 
"
HMRA2	YCR096C, A2	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	CATGTAAT		6.35	8.9264	8.47	"Silenced copy of a2 at HMR; similarity to Alpha2p; required along with a1p for inhibiting expression of the HO endonuclease in a/alpha HO/HO diploid cells with an active mating-type interconversion system
"	No Data	No Data	MCM1	"A | 0.060 0.530 0.040 0.010 0.010 0.910 0.870 0.400 
C | 0.670 0.010 0.010 0.010 0.010 0.010 0.020 0.080 
G | 0.060 0.450 0.010 0.970 0.010 0.010 0.020 0.080 
T | 0.210 0.010 0.940 0.010 0.970 0.070 0.090 0.440 
"
HMS1	YOR032C	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	GTGGGGTGAT	0.007835176	6.58	7.16483	10.29	"Basic helix-loop-helix (bHLH) protein with similarity to myc-family transcription factors; overexpression confers hyperfilamentous growth and suppresses the pseudohyphal filamentation defect of a diploid mep1 mep2 homozygous null mutant
"	YBR099C, YBR133C, YBR135W, YBR160W, YBR178W, YBR190W, YBR191W, YBR195C, YCR018C-A, YCR019W, YCR024C, YDL068W, YDL071C, YDL146W, YDL184C, YDL228C, YDR022C, YDR042C, YDR048C, YDR064W, YDR065W, YDR098C-A, YDR098C-B, YDR259C, YDR522C, YEL002C, YEL047C, YEL050C, YER007C-A, YER136W, YGL001C, YGL077C, YGL100W, YGL101W, YGL102C, YGL134W, YGR024C, YGR027C, YHR001W-A, YIR020C, YJL006C, YJL191W, YJL192C, YJR139C, YKL043W, YLR027C, YLR029C, YLR030W, YLR043C, YLR105C, YLR334C, YLR368W, YLR379W, YLR440C, YMR194W, YOR102W, YOR154W, YPL198W	YCR040W, YDR432W, YGR280C, YGR282C, YIL148W, YJR085C, YKR012C, YOR225W, YOR257W, YKL122C, YDL131W, YDR188W, YDR192C, YFR032C-A, YGL009C, YLR056W, YLR060W, YLR062C, YLR432W, YLR406C, YMR194W, YNL239W, YNL211C, YOR008C, YPL049C, YBR031W, YBL087C, YCR013C, YCR041W, YDR063W, YER117W, YGR279C, YKR042W, YKR013W, YNL078W, YOR190W, YOR252W, YOR226C, YCR097W-A, YAL069W, YBR220C, YBR222C, YDL061C, YDR187C, YGR155W, YHR142W, YHR143W-A, YJL052W, YLR089C, YLR028C, YLR061W, YMR221C, YMR225C, YNL244C, YOR032C, YOR066W, YPL048W, YCR073W-A, YDR096W, YDR158W, YDR464W, YFR005C, YGR063C, YHR053C, YHR025W, YHR055C, YIR034C, YJR143C, YJR116W, YLR372W, YMR071C, YNL147W, YNL149C, YOR285W, YOR321W, YOR351C, YPR020W, YPL187W, YAR068W, YBR283C, YGL103W, YGR180C, YHR208W, YIL016W, YML056C, YML085C, YML029W, YMR286W, YMR256C, YNL307C, YPL142C, YHR183W, YBR091C, YBR067C, YDR461W, YGR030C, YGR034W, YHR021C, YJR117W, YLR339C, YMR074C, YNL110C, YNL176C, YNL114C, YNL146W, YOL077W-A, YOL109W, YPL271W, YNL251C, YBL026W, YBR282W, YCL018W, YDL191W, YDR281C, YGL070C, YGL102C, YGR211W, YGR181W, YGR215W, YGR185C, YIL015W, YKL169C, YLR185W, YLR125W, YML055W, YML084W, YML026C, YML086C, YPL143W, YPL145C, YPL147W, YDR012W, YDR378C, YIL156W, YJR094W-A, YLR287C-A, YNL058C, YNL030W, YOL019W, YOR229W, YOR265W, YPL183W-A, YPL247C, YKL025C, YDL133C-A, YDL136W, YDR224C, YFR044C, YHR123W, YHR188C, YLR066W, YLR068W, YLR439W, YMR230W, YNL279W, YOR045W, YBR009C, YCR045C, YER154W, YGR285C, YIL153W, YKR048C, YNL057W, YOR234C, YJR148W, YAL010C, YAL012W, YAL042W, YAL043C-A, YAL016W, YBR162W-A, YBR196C, YDL075W, YDR261C, YKL081W, YOR008C-A, YGR037C, YLR344W, YLR380W, YMR139W, YOL144W, YOL086C, YOR293W, YOR327C, YOR357C, YOR329C, YPR054W, YJL159W, YKL209C, YKL178C, YMR260C, YPL092W, YCR088W, YDR471W, YLR343W, YLR379W, YMR112C, YMR083W, YNL150W, YNL152W, YOL143C, YNR043W, YBL028C, YBL032W, YBR262C, YCL027W, YIL027C, YJL188C, YJL158C, YKL175W, YKL177W, YML030W, YDR086C, YER131W, YGL189C, YHR010W, YHL032C, YIL158W, YKR057W, YKR093W, YLR264W, YPL225W, YBR171W, YDR234W, YEL058W, YHR190W, YKL058W, YLR040C, YNL259C, YOR085W, YOR023C, YOR393W, YPL031C, YPL066W, YCL066W, YCR053W, YDR447C, YGL245W, YHR005C-A, YIL127C, YJR063W, YML126C, YNL066W, YNL037C, YOR210W, YDL081C, YGL056C, YKL120W, YLR041W, YLR043C, YML009C, YMR237W, YOR018W, YOR020C, YPL063W, YCR097W, YFL026W, YGR077C, YHR072W-A, YKL003C, YLR354C, YLR388W, YOL126C, YPR062W, YPR036W, YDR322C-A, YDR294C, YDR357C, YER043C, YGL089C, YGR202C, YGR234W, YIL036W, YMR326C, YBR145W, YDL045W-A, YGR044C, YIR016W, YLL018C, YLR325C, YNL162W, YPL281C, YBR268W, YJR004C, YKL216W, YKL156W, YLR167W, YNR044W, YNL322C, YDR056C, YDR454C, YDR396W, YGL191W, YGL226W, YHL004W, YLR303W, YMR006C, YMR037C, YOR277C, YOR247W, YPL262W, YAL033W, YDL118W, YER019C-A, YGL031C, YGR148C, YHR136C, YHR141C, YMR245W, YNL263C, YOR063W, YCR028C-A, YKR094C, YLR237W, YLR300W, YLR302C, YMR003W, YNL070W, YNL074C, YNL045W, YOR248W, YBR244W, YDL121C, YGL030W, YFR057W, YGL032C, YGR118W, YHR135C, YJL136C, YKL069W, YLR051C, YLR421C, YMR215W, YBR090C, YFL034C-A, YFL037W, YGR085C, YGR027C, YJR135W-A, YKL006W, YLR332W, YLR396C, YLR334C, YNL169C, YOR369C, YPR044C, YCL007C, YDL184C, YIL008W, YKL164C, YKL196C, YLR180W, YML108W, YLR022C, YLR333C, YOL127W, YOR312C, YPR043W, YBL018C, YDR305C, YER048W-A, YGR209C, YKL160W, YLR147C, YLR177W, YML077W, YML081C-A, YOR182C	CBF1, MIG1, NHP10, RSF2, SUT1	"A | 0.067 0.089 0.021 0.065 0.143 0.193 0.049 0.140 0.588 0.183 
C | 0.168 0.087 0.211 0.024 0.112 0.144 0.053 0.058 0.146 0.021 
G | 0.709 0.247 0.693 0.820 0.437 0.618 0.094 0.598 0.015 0.209 
T | 0.056 0.577 0.075 0.091 0.308 0.045 0.804 0.204 0.251 0.587 
"
HSF1	YGL073W, MAS3, EXA3	Pachkov et al	http://www.ncbi.nlm.nih.gov/pubmed/17130146	AGAACCTTCTAGAAA	3.49476e-42	9.92	15.0666	14.55	"Trimeric heat shock transcription factor, activates multiple genes in response to stresses that include hyperthermia; recognizes variable heat shock elements (HSEs) consisting of inverted NGAAN repeats; posttranslationally regulated
"	YBL076C, YBR021W, YBR101C, YBR109C, YBR110W, YBR216C, YBR217W, YBR256C, YBR257W, YBR280C, YBR293W, YCL002C, YCL006C, YCL007C, YCL008C, YCL009C, YCL010C, YCL040W, YCL042W, YCL044C, YCL059C, YCL065W, YCL066W, YCL067C, YCR002C, YCR004C, YCR005C, YCR006C, YCR008W, YCR012W, YCR030C, YCR083W, YDL073W, YDL074C, YDL092W, YDL094C, YDL176W, YDL177C, YDL227C, YDL230W, YDL231C, YDL240W, YDR048C, YDR056C, YDR057W, YDR084C, YDR113C, YDR115W, YDR164C, YDR165W, YDR258C, YDR361C, YDR387C, YDR388W, YDR396W, YEL033W, YEL034W, YEL035C, YER035W, YER122C, YER123W, YER137C-A, YGL095C, YGL195W, YGR161C, YGR220C, YHR173C, YHR174W, YIL048W, YJL001W, YJL002C, YJR043C, YJR154W, YKL039W, YKL040C, YKL123W, YKL124W, YKR051W, YLL006W, YLL007C, YLL032C, YLL035W, YLL036C, YLL038C, YMR161W, YMR186W, YMR260C, YOL042W, YOL043C, YOL137W, YOL138C, YOR005C, YOR020C, YOR027W, YOR102W, YPR122W	YBR034C, YBR006W, YCL050C, YCR012W, YDR034C-C, YDR064W, YER145C, YER118C, YGL171W, YGL234W, YGL173C, YHL016C, YIL078W, YIL116W, YIL148W, YJR016C, YJR054W, YLR244C, YLR216C, YMR041C, YML116W, YMR046W-A, YOL012C, YOR192C-A, YOR225W, YOR259C, YPL237W, YPL207W, YPL211W, YBR187W, YBR158W, YBR189W, YBR160W, YBR191W, YBR162C, YDL128W, YDL130W, YDR222W, YEL012W, YEL042W, YEL046C, YGR121C, YHR143W, YHR174W, YJL049W, YKL043W, YKL049C, YLR025W, YLR058C, YLR029C, YLR062C, YLR094C, YLR432W, YLR406C, YNL239W, YNL209W, YNL277W, YOR071C, YPL019C, YBR001C, YBR031W, YBL087C, YBR003W, YBR005W, YBR035C, YCL049C, YCR013C, YDR397C, YDR399W, YER117W, YGL166W, YHL011C, YHL043W, YHL015W, YJR015W, YJR079W, YLR275W, YLR217W, YLR249W, YMR009W, YML115C, YOL011W, YOL014W, YOR226C, YOR258W, YPL240C, YAL038W, YBR157C, YDL061C, YDL095W, YDL129W, YEL017C-A, YGL008C, YGL012W, YGR090W, YGR094W, YGR123C, YJL052W, YJL086C, YKL110C, YLR089C, YLR061W, YLR405W, YMR191W, YNL208W, YNL274C, YPR138C, YBR126C, YDR050C, YBR068C, YDL037C, YDR158W, YDR462W, YFR005C, YHR053C, YHR055C, YJR145C, YJR147W, YKL016C, YJR149W, YLR338W, YLR340W, YLR372W, YMR105C, YNL149C, YOR289W, YPR052C, YPL283C, YBL027W, YBR251W, YBR283C, YER055C, YER056C-A, YER086W, YGL103W, YGL135W, YGL077C, YGR214W, YHR208W, YIL018W, YIL052C, YJL177W, YML029W, YMR284W, YMR316W, YNL301C, YNL333W, YBR093C, YBR067C, YDR461W, YGR004W, YGR034W, YIR031C, YLL061W, YLR304C, YLR367W, YLR339C, YMR131C, YNL142W, YNL146W, YPL265W, YPR013C, YBL024W, YBL026W, YBR282W, YBR252W, YBR286W, YDR275W, YDR281C, YER025W, YER056C, YER057C, YGL102C, YGR211W, YGR185C, YIL015W, YHR209W, YIL019W, YIL051C, YJL148W, YJL212C, YKL138C, YLR119W, YLR153C, YML022W, YML024W, YML026C, YMR315W, YNL300W, YNL332W, YNL302C, YOR132W, YPL079W, YPL111W, YPL143W, YPL081W, YPL145C, YER042W, YBR010W, YBR012C, YCR021C, YDR012W, YDR072C, YGL238W, YHR001W-A, YIL154C, YJR094W-A, YKR081C, YLR286C, YLR227W-A, YLR287C-A, YML123C, YMR022W, YNL030W, YNR067C, YOL052C-A, YAL044C, YAR015W, YBR167C, YDL136W, YDR224C, YEL050C, YGL047W, YFR042W, YGR160W, YGR132C, YGR161W-A, YHR152W, YHR154W, YKL056C, YLR068W, YLR441C, YNL217W, YNL281W, YNL283C, YNL284C-A, YOR077W, YOR047C, YPL057C, YBL092W, YBR009C, YDR405W, YER124C, YHL021C, YIL117C, YIL119C, YIL121W, YIL123W, YJR027W, YLR225C, YLR285W, YMR023C, YNL054W-A, YNL055C, YOR234C, YPL249C-A, YJR148W, YAL040C, YDL103C, YDL075W, YDR225W, YGL016W, YGR159C, YHR126C, YKL081W, YKL112W, YKL055C, YLR069C, YLR410W-A, YDR134C, YDR508C, YHR089C, YJR124C, YLR344W, YMR145C, YOL086C, YPR010C, YBL003C, YDL228C, YER036C, YGL147C, YGR254W, YGR192C, YHR215W, YJL217W, YJL159W, YJL191W, YKL180W, YLR130C, YPL118W, YPL090C, YFL031W, YCR087C-A, YDR170W-A, YHR060W, YHR094C, YJR123W, YLL039C, YMR108W, YMR110C, YMR142C, YPL273W, YAR071W, YAR075W, YBL002W, YBL032W, YCL025C, YBR296C, YDL229W, YDL201W, YER035W, YER062C, YGL078C, YGR219W, YGR191W, YGR255C, YIL053W, YHR216W, YJL152W, YJL184W, YJL158C, YJL190C, YKL150W, YKL181W, YLR163C, YML063W, YMR292W, YNL310C, YBR016W, YDR382W, YDR418W, YDR450W, YER131W, YGL189C, YHL026C, YHR010W, YIL094C, YIL098C, YIL130W, YJR070C, YKR057W, YKR059W, YLR259C, YLR264W, YNL067W, YNL069C, YOL058W, YOL031C, YOL002C, YPL225W, YDL082W, YDL084W, YGL055W, YGR109W-B, YJL067W, YKL096W, YLR104W, YLR076C, YMR174C, YMR242C, YPL035C, YPL037C, YEL054C, YBL101W-A, YER159C-A, YFL002C, YGL245W, YHL001W, YIL157C, YLR233C, YNL031C, YNL066W, YOR204W, YOR208W, YPL220W, YMR008C, YBR202W, YDL081C, YDL083C, YGL028C, YGR165W, YHR128W, YJL098W, YJL068C, YKL120W, YLR075W, YLR413W, YLR448W, YMR205C, YPL061W, YPL032C, YBR078W, YBR084C-A, YDL048C, YFL026W, YGR019W, YKL030W, YKL001C, YKL032C, YLR352W, YLR388W, YMR120C, YOL120C, YOR335C, YBL072C, YCL034W, YDL172C, YDR296W, YER070W, YGL123W, YGL157W, YGR260W, YLR204W, YPL128C, YFL032W, YBR143C, YDL014W, YCR096C, YDR111C, YDR174W, YFL056C, YGR074W, YGR044C, YGR080W, YHR038W, YHR070W, YHR072W, YJL037W, YKL029C, YLL045C, YLR014C, YLR351C, YLR355C, YLR325C, YMR116C, YMR121C, YNL160W, YNL162W, YOL119C, YOL151W, YOL121C, YOR304W, YPR061C, YPR002C-A, YPR035W, YPR067W, YBL005W-A, YBL038W, YBL042C, YCL035C, YCL037C, YDL173W, YDR321W, YDR322W, YDR358W, YER044C, YGL120C, YGR259C, YJL196C, YJL198W, YKL152C, YKL218C, YKL156W, YLR197W, YLR167W, YLR201C, YML040W, YML073C, YNL005C, YPL093W, YPL131W, YPL163C, YER091C, YBR054W, YBR024W, YBR028C, YCR034W, YGL225W, YHL040C, YHR020W, YIL170W, YIL140W, YLR270W, YMR006C, YNL073W, YNL109W, YOL039W, YOL070C, YOR277C, YOR247W, YPL197C, YEL027W, YAL060W, YAR042W, YAL062W, YBR181C, YBR185C, YDL124W, YDR214W, YFR056C, YGL031C, YGR148C, YGR176W, YHR136C, YHR170W, YHR141C, YJL077C, YJL079C, YKL068W, YKL133C, YKL103C, YLR048W, YLR112W, YLR118C, YLR426W, YMR184W, YMR186W, YOR063W, YOR095C, YBL107W-A, YBR059C, YCR003W, YCR031C, YCR005C, YDR055W, YDR453C, YFL002W-B, YER165W, YFL004W, YGL253W, YGL255W, YGL226C-A, YHL033C, YHR019C, YIL133C, YIL171W, YJR045C, YJR077C, YLR267W, YLR300W, YMR062C, YMR007W, YMR038C, YOL009C, YOL040C, YOL071W, YOR278W, YOR248W, YOR280C, YPL198W, YKL009W, YAL028W, YEL064C, YFR055W, YGL030W, YGL032C, YGR118W, YGR177C, YHR203C, YJL136C, YJL138C, YJL078C, YKL069W, YKL100C, YLR452C, YLR423C, YML018C, YMR243C, YMR215W, YMR217W, YMR250W, YNL268W, YOR024W, YOR026W, YPR107C, YDR120C, YFL034C-A, YFR030W, YFR031C-A, YHR046C, YHR048W, YHR078W, YHR049W, YJL012C, YKL006W, YKL008C, YLL024C, YLL026W, YOR369C, YOR375C, YPR040W, YPR044C, YCL040W, YCL042W, YDL182W, YDR365W-A, YER110C, YGR240C, YIL009W, YLR178C, YLR150W, YLR180W, YNL327W, YPL136W, YPL106C, YDR119W, YHR047C, YOL101C, YBL016W, YER073W, YER102W, YJL200C, YKL163W, YLR205C, YLR175W, YLR179C, YNL007C, YOR182C, YPL107W, YER061C	ABF1, EDS1, XBP1	"A | 0.481 0.013 0.990 0.911 0.135 0.185 0.039 0.064 0.270 0.089 0.570 0.001 0.997 0.969 0.415 
C | 0.102 0.001 0.001 0.005 0.419 0.374 0.184 0.252 0.564 0.191 0.106 0.001 0.001 0.001 0.146 
G | 0.417 0.985 0.008 0.054 0.150 0.261 0.089 0.002 0.137 0.013 0.323 0.997 0.001 0.029 0.227 
T | 0.001 0.001 0.001 0.030 0.296 0.179 0.688 0.682 0.029 0.707 0.001 0.001 0.001 0.001 0.213 
"
IME1	YJR094C	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	CCGCCGAG	4.337748e-05	11.38	15.8686	12.27	"Master regulator of meiosis that is active only during meiotic events, activates transcription of early meiotic genes through interaction with Ume6p, degraded by the 26S proteasome following phosphorylation by Ime2p
"	YBR253W, YDR206W, YGR095C, YGR096W, YGR125W	YDR034C-D, YPL016W, YBR128C, YLL034C, YPL283C, YLR156W, YNL339C, YMR100W, YDR076W, YOR043W, YJR094C, YJR148W, YNL278W, YOL114C, YOR329C, YIL022W, YLR160C, YPL092W, YCR024C-A, YDR022C, YKR026C, YKR093W, YML013C-A, YOL119C, YPR164W, YLR297W, YLR117C, YOR343C-B, YOR034C, YFL068W	DAL82, RSC3, RSC30, SUT1, YPR196W	"A | 0.001 0.018 0.001 0.001 0.001 0.001 0.997 0.118 
C | 0.997 0.770 0.001 0.997 0.631 0.001 0.001 0.001 
G | 0.001 0.211 0.997 0.001 0.257 0.997 0.001 0.880 
T | 0.001 0.001 0.001 0.001 0.111 0.001 0.001 0.001 
"
INO2	YDR123C, SCS1, DIE1	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	TCACATGC	9.446456e-22	7.71	11.0688	10.02	"Component of the heteromeric Ino2p/Ino4p basic helix-loop-helix transcription activator that binds inositol/choline-responsive elements (ICREs), required for derepression of phospholipid biosynthetic genes in response to inositol depletion
"	YAL048C, YAL053W, YAL054C, YBL106C, YBR029C, YBR030W, YBR032W, YBR050C, YBR083W, YCR057C, YCR092C, YCR093W, YCR098C, YDL049C, YDL080C, YDR050C, YDR072C, YDR073W, YDR123C, YDR124W, YDR129C, YDR146C, YDR147W, YDR169C, YDR274C, YDR275W, YDR278C, YDR289C, YDR312W, YDR345C, YDR428C, YDR497C, YDR521W, YER033C, YER034W, YER043C, YER091C, YER092W, YGR050C, YGR157W, YGR238C, YGR253C, YHL020C, YHR082C, YHR083W, YJL048C, YJL117W, YJL119C, YJL140W, YJL141C, YJL142C, YJL149W, YJL150W, YJL151C, YJL152W, YJL153C, YJR073C, YJR074W, YJR104C, YJR105W, YKL060C, YKL079W, YKL081W, YKL082C, YKL182W, YKR037C, YLR034C, YLR168C, YLR169W, YLR171W, YLR229C, YLR347C, YLR349W, YLR447C, YLR448W, YML075C, YML096W, YML097C, YMR010W, YMR070W, YNL043C, YNL044W, YNL080C, YNL103W, YNL104C, YNL117W, YNL118C, YNL129W, YNL130C, YNL169C, YNL171C, YNL175C, YNL178W, YNL277W, YNL306W, YNL307C, YNR016C, YNR017W, YOL087C, YOL146W, YOL147C, YOR032C, YOR097C, YOR211C, YOR212W, YOR230W, YOR234C, YOR316C, YOR317W, YPL018W, YPL019C, YPL231W, YPL254W, YPR035W	YKL043W, YPL021W, YPL240C, YNL210W, YPL016W, YDR527W, YOR317W, YBR093C, YBR129C, YOL107W, YDR281C, YLR155C, YLR157C, YCR050C, YDR438W, YAL043C, YDL134C, YOR043W, YMR023C, YMR171C, YBR134W, YIR042C, YLR158C, YBR101C, YFL016C, YNL184C, YOR298C-A, YAR071W, YGL248W, YHR007C, YLR260W, YML130C, YNL064C, YDR209C, YKL120W, YHR067W, YHR219W, YLR168C, YKL027W, YLL012W, YMR067C, YBR185C, YHR138C, YJL079C, YOR027W, YGL255W, YLR302C, YMR066W, YOR218C, YJL076W, YLR049C, YOR090C, YPL075W, YMR126C, YBL051C, YDR123C, YFL068W, YNL170W, YOL101C, YOR306C, YNL007C, YNL324W	CBF1, TYE7, YAP7	"A | 0.023 0.015 0.959 0.025 0.622 0.003 0.037 0.038 
C | 0.064 0.967 0.014 0.773 0.014 0.006 0.007 0.758 
G | 0.446 0.003 0.006 0.131 0.351 0.009 0.927 0.150 
T | 0.467 0.015 0.021 0.071 0.013 0.982 0.029 0.054 
"
INO4	YOL108C	Pachkov et al	http://www.ncbi.nlm.nih.gov/pubmed/17130146	GCATGTGAAAA	6.077134e-29	8.53	15.1564	13.09	"Transcription factor required for derepression of inositol-choline-regulated genes involved in phospholipid synthesis; forms a complex, with Ino2p, that binds the inositol-choline-responsive element through a basic helix-loop-helix domain
"	YAL053W, YAL054C, YBL106C, YBR029C, YBR030W, YBR066C, YBR083W, YBR085C-A, YBR120C, YBR121C, YBR144C, YBR145W, YBR158W, YBR238C, YCR034W, YCR057C, YCR064C, YCR065W, YCR098C, YDL049C, YDL080C, YDL124W, YDL125C, YDL136W, YDL141W, YDL142C, YDR050C, YDR072C, YDR073W, YDR085C, YDR129C, YDR146C, YDR147W, YDR169C, YDR274C, YDR275W, YDR278C, YDR297W, YDR312W, YDR343C, YDR345C, YDR384C, YDR385W, YDR438W, YDR451C, YDR452W, YDR497C, YDR498C, YDR499W, YDR508C, YDR510W, YEL040W, YER017C, YER026C, YER033C, YER034W, YER035W, YER043C, YER045C, YER062C, YER063W, YER091C, YER092W, YER158C, YFL017W-A, YFL018C, YFR015C, YGL077C, YGL116W, YGL184C, YGR050C, YGR055W, YGR123C, YGR154C, YGR155W, YGR157W, YGR169C, YGR170W, YGR177C, YGR189C, YGR196C, YGR233C, YGR238C, YHL004W, YHL007C, YHR067W, YHR096C, YHR123W, YIL099W, YIL119C, YJL048C, YJL078C, YJL117W, YJL119C, YJL140W, YJL141C, YJL142C, YJL152W, YJL153C, YJL167W, YJL168C, YJR008W, YJR104C, YJR105W, YJR127C, YJR145C, YJR146W, YJR147W, YKL060C, YKL062W, YKL081W, YKL082C, YKL110C, YKL128C, YKL182W, YKR093W, YLR018C, YLR019W, YLR034C, YLR044C, YLR108C, YLR109W, YLR132C, YLR133W, YLR249W, YLR253W, YLR347C, YLR349W, YLR351C, YLR352W, YLR370C, YLR371W, YLR378C, YLR380W, YML006C, YML075C, YMR037C, YMR043W, YMR070W, YMR084W, YMR135C, YMR136W, YMR186W, YMR195W, YMR301C, YMR306C-A, YMR307W, YMR316C-A, YMR317W, YMR319C, YNL015W, YNL043C, YNL044W, YNL080C, YNL090W, YNL101W, YNL103W, YNL104C, YNL129W, YNL130C, YNL144C, YNL155W, YNL156C, YNL169C, YNL171C, YNL175C, YNL178W, YNL246W, YNL306W, YNL307C, YNR016C, YNR017W, YOL010W, YOL027C, YOR032C, YOR064C, YOR065W, YOR230W, YOR234C, YOR316C, YOR317W, YOR344C, YPL056C, YPL090C, YPL155C, YPL231W, YPR013C, YPR023C, YPR024W, YPR028W, YPR035W, YPR115W, YPR124W, YPR195C	YHL014C, YMR012W, YOL045W, YPL207W, YDR217C, YJL082W, YJL116C, YMR159C, YPL016W, YOL108C, YDL158C, YDR308C, YGR244C, YJL099W, YFL011W, YGR058W, YOL107W, YCL012W, YKL171W, YIL055C, YGL175C, YKR051W, YLR131C, YHR154W, YMR234W, YNL217W, YNR070W, YKR023W, YJL090C, YML005W, YOR386W, YPR119W, YHR089C, YIR042C, YLR005W, YDR290W, YGR226C, YKL182W, YOL113W, YDL169C, YJL184W, YJL222W, YER137C, YDR048C, YBR177C, YGL029W, YLR078C, YJR161C, YPR195C, YER099C, YLR168C, YBL042C, YBR022W, YDR088C, YDR058C, YDR092W, YDR034C, YDR390C, YDR422C, YER135C, YJR108W, YJR110W, YMR037C, YNL105W, YEL035C, YBR185C, YDL090C, YGL003C, YGL035C, YHR168W, YKL097C, YKL072W, YKL103C, YJR043C, YKR068C, YAL061W, YFR057W, YJL108C, YKL130C, YJL045W, YLL054C, YNL205C, YBL013W, YGR206W, YIL072W, YGR056W, YJL039C, YKL034W, YPR071W, YBL048W, YGL162W, YJL174W, YLR177W, YNL009W, YOR126C	None	"A | 0.244 0.002 0.879 0.001 0.061 0.058 0.001 0.869 0.951 0.837 0.670 
C | 0.210 0.996 0.057 0.015 0.001 0.006 0.001 0.049 0.001 0.001 0.001 
G | 0.515 0.001 0.015 0.001 0.937 0.020 0.997 0.081 0.047 0.121 0.126 
T | 0.031 0.001 0.049 0.983 0.001 0.916 0.001 0.001 0.001 0.041 0.203 
"
IXR1	YKL032C, ORD1	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	AAACCGGAAGCGGTG	3.58641e-09	13.5	20.1792	18.34	"Protein that binds DNA containing intrastrand cross-links formed by cisplatin, contains two HMG (high mobility group box) domains, which confer the ability to bend cisplatin-modified DNA; mediates aerobic transcriptional repression of COX5b
"	YAL040C, YAL064W, YBL018C, YBL029W, YBL087C, YBR007C, YBR008C, YBR152W, YBR163W, YDL247W, YDR042C, YDR084C, YDR086C, YDR098C, YDR101C, YDR259C, YDR314C, YDR426C, YDR427W, YDR441C, YDR442W, YDR472W, YEL004W, YEL005C, YER011W, YER133W, YER158C, YFL029C, YGL116W, YGL190C, YGR024C, YGR114C, YGR115C, YGR249W, YGR279C, YHR005C, YHR005C-A, YHR028C, YHR092C, YHR093W, YHR096C, YHR146W, YIL015C-A, YIL119C, YIR020C, YJL023C, YJL216C, YJR100C, YJR160C, YKL044W, YKL077W, YKL167C, YKR010C, YKR075C, YLL033W, YLL034C, YLL041C, YLR002C, YLR112W, YLR143W, YLR165C, YLR166C, YLR167W, YLR286C, YLR287C, YLR300W, YMR052W, YMR177W, YMR260C, YMR272C, YMR279C, YNL120C, YNL145W, YNL146W, YNR054C, YOL099C, YOR023C, YOR024W, YOR025W, YOR049C, YOR050C, YOR253W, YOR287C, YOR315W, YOR339C, YPL156C	YDR034C-C, YDR366C, YER178W, YGL173C, YHL016C, YHL048W, YKR041W, YKR012C, YMR045C, YMR046W-A, YOL013W-A, YOR192C-A, YOR227W, YMR016C, YAL007C, YDR222W, YEL017W, YGL009C, YGR095C, YLR463C, YLR465C, YLR467W, YOR039W, YOR071C, YPL015C, YPL047W, YDR034C-A, YDR034C-D, YDR365W-B, YGR279C, YIL141W, YJR015W, YKR011C, YKR013W, YKR076W, YLR213C, YLR243W, YMR011W, YMR042W, YMR046C, YOR192C, YOR192C-B, YPL177C, YMR266W, YAL003W, YFR035C, YGR122C-A, YHR145C, YLR462W, YLR464W, YMR194C-A, YPL016W, YPR138C, YBR066C, YDL037C, YJR147W, YLL066C, YLR342W, YMR135W-A, YNL113W, YNL115C, YOL104C, YOL106W, YOR317W, YOR347C, YGR244C, YHR210C, YLR152C, YLR157C-A, YNL333W, YNL337W, YBR129C, YDR098C-A, YFL013C, YFR006W, YKR102W, YLR341W, YMR135C, YMR136W, YNL142W, YOL103W-B, YOL105C, YOL139C, YOL109W, YOR344C, YPR013C, YPR015C, YOR086C, YCL020W, YDR340W, YDR281C, YER029C, YHR211W, YKL206C, YMR315W, YNL332W, YNL338W, YBR012C, YBR012W-B, YDR380W, YHR005C, YJR026W, YJR028W, YLR256W, YLR227W-A, YMR050C, YOR233W, YAR010C, YBR169C, YEL024W, YEL056W, YGR161C-C, YGR161W-A, YGR105W, YLR410W-B, YNL219C, YNL284C-A, YOR009W, YOR075W, YPL057C, YBR012W-A, YCR018C-A, YHL049C, YIL121W, YIL155C, YJR027W, YJR029W, YLR256W-A, YMR051C, YMR023C, YNL054W-A, YNR066C, YOR264W, YPL216W, YAR009C, YBR230C, YGR161C-D, YGR104C, YGR161W-B, YLR035C-A, YLR067C, YML003W, YLR410W-A, YPL026C, YBR132C, YJR151C, YLR348C, YPL274W, YCL026C-A, YBR265W, YHR214C-B, YHR215W, YHR217C, YIL060W, YJL217W, YPL154C, YPL092W, YPL156C, YFL014W, YDL038C, YDR170W-A, YFL021W, YGR036C, YGR038C-A, YHR094C, YJR156C, YLL067C, YLR312C, YLR343W, YLR345W, YLR349W, YPL137C, YAR071W, YBL030C, YCL025C, YBR296C, YDR316W-A, YGR189C, YHR213W, YHR214C-C, YHR214W-A, YNR001C, YPR167C, YGR262C, YIL064W, YJR003C, YCR061W, YGL250W, YHL026C, YIL162W, YLR232W, YML133C, YNL097C, YNL101W, YNR077C, YOL002C, YPL257W-A, YDR345C, YER101C, YIL114C, YMR143W, YBR241C, YDR261W-A, YDR210W, YJL101C, YKL062W, YPL066W, YBL101W-A, YER159C-A, YER190W, YLR231C, YLR233C, YML128C, YMR056C, YNL037C, YDR209C, YFR047C, YGR108W, YKL093W, YPL004C, YDL021W, YFL026W, YGR049W, YJL038C, YKL032C, YLL050C, YLR356W, YMR122C, YOL152W, YOL126C, YCL038C, YGR234W, YKL153W, YML045W-A, YBR139W, YDL014W, YDR481C, YDR544C, YFL027C, YGR044C, YMR086W, YMR148W, YMR088C, YMR090W, YNL160W, YOL155C, YOL157C, YPR002C-A, YPR035W, YNL316C, YBL005W-A, YBL042C, YJL196C, YML040W, YMR297W, YNR040W, YOR142W-B, YOR144C, YOR148C, YOR180C, YPR179C, YER138C, YIL140W, YJR110W, YLR299W, YMR006C, YMR039C, YAL062W, YAR053W, YBR217W, YDR210W-D, YHR170W, YJL077C, YPL041C, YBL107W-A, YFL002W-B, YER137C-A, YER138W-A, YGL255W, YIL169C, YLR237W, YLR300W, YMR034C, YNL104C, YOL003C, YPL257W-B, YBR244W, YDR210W-A, YDR239C, YDR210W-C, YDR241W, YHR137W, YJL076W, YMR211W, YPR158W-B, YFR030W, YGR051C, YLR334C, YMR158C-B, YMR158W-A, YNL141W, YOL103W-A, YOR343C-B, YPR012W, YCL040W, YDR365W-A, YIL011W, YPL136W, YFL064C, YGR027W-A, YJL042W, YOL101C, YOR306C, YOR343C-A, YOR374W, YPR069C, YPR009W, YGL096W, YGL160W, YGR203W, YGR235C, YNL324W, YPL103C	None	"A | 0.997 0.753 0.433 0.189 0.378 0.377 0.189 0.754 0.754 0.001 0.001 0.189 0.056 0.001 0.001 
C | 0.001 0.001 0.001 0.755 0.620 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 
G | 0.001 0.001 0.377 0.001 0.001 0.621 0.566 0.244 0.001 0.997 0.001 0.809 0.942 0.377 0.809 
T | 0.001 0.245 0.189 0.055 0.001 0.001 0.244 0.001 0.244 0.001 0.001 0.001 0.001 0.621 0.189 
"
JHD1	YER051W, KDM2, JHDM1	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	TTCGAA	0.001618067	7.6	9.56832	7.6	"JmjC domain family histone demethylase specific for H3-K36, similar to proteins found in human, mouse, drosophila, X. laevis, C. elegans, and S. pombe
"	No Data	No Data	None	"A | 0.012 0.004 0.153 0.005 0.994 0.986 
C | 0.001 0.001 0.841 0.001 0.001 0.001 
G | 0.001 0.001 0.001 0.841 0.001 0.001 
T | 0.986 0.994 0.005 0.153 0.004 0.012 
"
LEU3	YLR451W	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	CCGGTACCGG	2.570392e-21	9.97	13.087	13.53	"Zinc-finger transcription factor that regulates genes involved in branched chain amino acid biosynthesis and ammonia assimilation; positively regulated by alpha-isopropylmalate, an intermediate in leucine biosynthesis
"	YAL028W, YAL029C, YAR009C, YBR048W, YBR068C, YCR018C-A, YCR019W, YCR024C-A, YDR042C, YDR064W, YDR131C, YDR210W-D, YDR278C, YEL050C, YEL055C, YER007C-A, YER071C, YER072W, YER073W, YER137C, YER189W, YER190W, YGL001C, YGL009C, YGL135W, YGL136C, YGR190C, YGR191W, YGR221C, YGR255C, YGR256W, YHL034C, YHR207C, YHR208W, YIL014W, YIL015C-A, YJL139C, YJL148W, YJL191W, YJL192C, YJR016C, YJR018W, YJR100C, YKL118W, YKL120W, YKL172W, YLR105C, YLR354C, YLR355C, YLR356W, YLR367W, YLR368W, YML124C, YMR014W, YMR108W, YMR193W, YMR194W, YNL102W, YNL103W, YNL104C, YNL337W, YNR050C, YOL121C, YOR108W, YOR226C, YOR227W, YOR236W, YOR271C, YOR369C, YPL198W	YJR016C, YJR048W, YOR225W, YGL009C, YNL241C, YOR226C, YHR145C, YPL016W, YBR068C, YLR307W, YOL104C, YGL071W, YHR208W, YIL050W, YOR161C, YPL084W, YBR097W, YBR129C, YOR316C, YCR050C, YMR173W, YER152C, YIL121W, YLR099C, YHR063C, YLR348C, YPR026W, YMR291W, YFL021W, YLR349W, YMR108W, YMR110C, YJR003C, YOL058W, YGR164W, YLR451W, YKL120W, YMR173W-A, YOR084W, YKL030W, YBR083W, YKL029C, YLR355C, YER091C, YHR018C, YAL062W, YGR146C, YGR117C, YHR136C, YDR061W, YFL008W, YGL190C, YGL255W, YKR036C, YNL104C, YDR245W, YHR135C, YOR375C, YBL051C, YMR276W, YOL101C, YER073W, YNL324W	GCN4	"A | 0.054 0.019 0.025 0.048 0.309 0.729 0.146 0.048 0.025 0.034 
C | 0.750 0.919 0.026 0.040 0.065 0.057 0.722 0.894 0.053 0.036 
G | 0.150 0.035 0.880 0.793 0.152 0.072 0.080 0.031 0.881 0.898 
T | 0.045 0.027 0.068 0.118 0.474 0.143 0.053 0.026 0.042 0.032 
"
LYS14	YDR034C	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	AAATTCCGG		8.3	12.9883	11.08	"Transcriptional activator involved in regulation of genes of the lysine biosynthesis pathway; requires 2-aminoadipate semialdehyde as co-inducer
"	No Data	No Data	NHP10, STB5, STE12	"A | 0.788 0.940 0.920 0.010 0.010 0.010 0.010 0.010 0.020 
C | 0.010 0.010 0.010 0.010 0.050 0.970 0.970 0.010 0.180 
G | 0.051 0.010 0.010 0.010 0.010 0.010 0.010 0.970 0.410 
T | 0.152 0.040 0.060 0.970 0.930 0.010 0.010 0.010 0.390 
"
MAC1	YMR021C, CUA1	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	TTTTTGCTC	1.4605452e-06	7.24	6.95399	8.68	"Copper-sensing transcription factor involved in regulation of genes required for high affinity copper transport
"	YAL022C, YAR009C, YAR068W, YAR069C, YBL018C, YBL046W, YBL047C, YBL048W, YBL049W, YBL074C, YBL101W-B, YBR156C, YBR158W, YBR297W, YCL031C, YCR025C, YDL024C, YDL030W, YDL040C, YDL045W-A, YDL128W, YDL184C, YDR058C, YDR355C, YDR506C, YEL032W, YER001W, YER007C-A, YER145C, YER146W, YFR016C, YGL115W, YGL135W, YGL136C, YGL172W, YGL173C, YGL195W, YGL234W, YGL236C, YGR124W, YGR136W, YGR137W, YGR255C, YGR256W, YHL034C, YHR135C, YHR193C, YHR194W, YIL015C-A, YIL102C, YIL112W, YIL135C, YIL159W, YIL160C, YIR020C, YJL006C, YJL048C, YJL052W, YJL148W, YJL217W, YJR041C, YJR042W, YJR049C, YJR050W, YJR100C, YKL063C, YKL080W, YKL118W, YKL127W, YKR073C, YLL058W, YLL059C, YLR035C-A, YLR105C, YLR110C, YLR111W, YLR122C, YLR123C, YLR124W, YLR213C, YLR214W, YLR328W, YLR354C, YLR410W-A, YLR410W-B, YML055W, YML056C, YML071C, YMR188C, YMR189W, YMR319C, YMR320W, YNL016W, YNL017C, YNL034W, YNL097C, YNL111C, YNL250W, YNL251C, YNL255C, YOL022C, YOL077W-A, YOL078W, YOL080C, YOL092W, YOL121C, YOL152W, YOL155C, YOR042W, YOR138C, YOR140W, YOR236W, YOR268C, YOR269W, YOR271C, YPL018W, YPL019C, YPL177C, YPL179W, YPL192C, YPL198W, YPL251W, YPL253C, YPR010C, YPR072W, YPR109W, YPR110C, YPR111W, YPR123C, YPR124W, YPR125W, YPR160W, YPR170C, YPR171W	YLR274W, YMR166C, YDR365W-B, YOR038C, YPL014W, YPL016W, YDR128W, YFL041W, YMR103C, YMR105C, YOL104C, YPL283C, YDR276C, YGR250C, YNL339C, YHR050W, YMR104C, YMR106C, YOL105C, YIL015W, YGR296W, YCR021C, YHL050C, YMR022W, YOR229W, YOR043W, YOR075W, YER150W, YIL087C, YML120C, YMR023C, YNR066C, YJR148W, YMR084W, YNL123W, YDL234C, YKL145W, YDL040C, YFL050C, YGR008C, YIR035C, YLR343W, YOR324C, YOR354C, YCL027W, YBR296C, YGL112C, YKL212W, YLR129W, YNR038W, YPL087W, YGL027C, YGR138C, YOR051C, YDR419W, YLR258W, YAR027W, YGR139W, YFL026W, YOR361C, YHR219W, YHR070W, YIR043C, YNL160W, YER067W, YGR261C, YML100W-A, YNR044W, YBR054W, YIL102C, YLR297W, YOL004W, YNL233W, YDR055W, YMR034C, YEL037C, YHR135C, YLR049C, YLR452C, YMR181C, YMR250W, YLL026W, YNL167C, YOL164W, YOR343C-B, YBL051C, YCL040W, YCL042W, YLR178C, YMR276W, YFL068W, YLR395C	None	"A | 0.178 0.275 0.163 0.133 0.003 0.070 0.016 0.013 0.064 
C | 0.107 0.181 0.040 0.043 0.212 0.048 0.804 0.075 0.788 
G | 0.090 0.133 0.107 0.090 0.003 0.780 0.033 0.184 0.080 
T | 0.624 0.411 0.689 0.734 0.781 0.101 0.147 0.728 0.069 
"
MATA1	MATA1, A1	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	ACACAAT	0.0005445962	8.76	10.7745	8.76	"Expressed copy (at MATa) of a1; homeobox-domain protein that, along with alpha2, represses transcription of haploid-specific genes in diploid cells; a1 sequence is not present in SGD because the sequenced S288C strain is MATalpha, not MATa
"	YBL018C, YBR098W, YBR100W, YBR102C, YBR103W, YBR281C, YBR282W, YCR083W, YDL192W, YDR066C, YDR177W, YDR235W, YDR365C, YDR365W-A, YDR365W-B, YDR367W, YDR372C, YDR373W, YDR473C, YEL002C, YEL018W, YEL019C, YEL055C, YER007W, YER008C, YER009W, YER041W, YER135C, YER183C, YFL029C, YGL170C, YGL233W, YGR024C, YGR128C, YGR129W, YGR151C, YGR152C, YGR153W, YGR166W, YGR167W, YHL002W, YHL003C, YHR005C, YHR074W, YHR109W, YHR118C, YHR119W, YHR120W, YIL048W, YJL155C, YKL078W, YKR010C, YLR222C, YLR277C, YLR368W, YLR426W, YMR066W, YNL010W, YNL011C, YNL101W, YNL105W, YNL187W, YNL245C, YNL253W, YNL254C, YOL077W-A, YOL078W, YOL080C, YOL087C, YOR035C, YOR036W, YOR156C, YOR285W, YOR339C, YPR110C, YPR111W, YPR172W, YPR188C, YPR189W	No Data	None	"A | 0.488 0.012 0.964 0.012 0.964 0.964 0.012 
C | 0.012 0.964 0.012 0.964 0.012 0.012 0.012 
G | 0.488 0.012 0.012 0.012 0.012 0.012 0.012 
T | 0.012 0.012 0.012 0.012 0.012 0.012 0.964 
"
MATA2	MATA2, A2	Fordyce et. al.	http://www.ncbi.nlm.nih.gov/pubmed/20802496	ATCATGTA		5.17	5.82059	6.89	"Protein of unknown function, identical to the C-terminal 119 amino acid residues of the MATalpha2 protein; a2 sequence is not present in SGD because the sequenced S288C strain is MATalpha, not MATa
"	No Data	No Data	None	"A | 0.430 0.270 0.089 0.490 0.040 0.030 0.010 0.550 
C | 0.140 0.060 0.535 0.060 0.120 0.010 0.060 0.170 
G | 0.300 0.230 0.040 0.410 0.060 0.950 0.010 0.010 
T | 0.130 0.440 0.337 0.040 0.780 0.010 0.920 0.270 
"
MATALPHA2	YCR039C, ALPHA2	Pachkov et al	http://www.ncbi.nlm.nih.gov/pubmed/17130146	AATTACATG		7.76	13.2969	10.34	"Homeobox-domain protein that, with Mcm1p, represses a-specific genes in haploids; acts with A1p to repress transcription of haploid-specific genes in diploids; one of two genes encoded by the MATalpha mating type cassette
"	No Data	No Data	None	"A | 0.997 0.599 0.100 0.001 0.997 0.001 0.997 0.001 0.100 
C | 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.200 0.001 
G | 0.001 0.001 0.100 0.001 0.001 0.001 0.001 0.001 0.898 
T | 0.001 0.399 0.799 0.997 0.001 0.001 0.001 0.798 0.001 
"
MBP1	YDL056W	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	ACGCGTC	2.8309998e-61	6.99	10.2902	9.51	"Transcription factor involved in regulation of cell cycle progression from G1 to S phase, forms a complex with Swi6p that binds to MluI cell cycle box regulatory element in promoters of DNA synthesis genes
"	YAL002W, YAL062W, YAR007C, YAR008W, YBL002W, YBL003C, YBL023C, YBR050C, YBR070C, YBR071W, YBR077C, YBR078W, YBR162C, YBR162W-A, YBR190W, YBR191W, YCL061C, YCR063W, YCR064C, YCR065W, YCR066W, YDL003W, YDL017W, YDL018C, YDL101C, YDL105W, YDL106C, YDL227C, YDR042C, YDR097C, YDR113C, YDR115W, YDR228C, YDR229W, YDR263C, YDR279W, YDR309C, YDR324C, YDR325W, YDR451C, YDR452W, YDR500C, YDR501W, YDR507C, YDR509W, YDR524C, YDR525W, YDR526C, YDR528W, YEL061C, YEL076W-C, YEL077C, YER046W, YER070W, YER071C, YER072W, YER078C, YER079W, YER087C-A, YER094C, YER095W, YER111C, YER112W, YER118C, YER120W, YER124C, YER125W, YER126C, YER127W, YER189W, YER190W, YFL011W, YFL013W-A, YFR017C, YGL038C, YGL147C, YGL190C, YGR013W, YGR041W, YGR085C, YGR109C, YGR109W-A, YGR109W-B, YGR110W, YGR111W, YGR125W, YGR165W, YGR180C, YGR188C, YGR189C, YGR191W, YGR221C, YHL012W, YHL013C, YHR061C, YHR143W, YHR149C, YHR150W, YHR151C, YHR152W, YHR193C, YHR194W, YHR195W, YIL026C, YIL123W, YJL045W, YJL073W, YJL074C, YJL080C, YJL115W, YJL116C, YJL148W, YJL158C, YJL184W, YJL185C, YJL186W, YJL187C, YJL194W, YJL196C, YJR030C, YJR044C, YKL084W, YKL096W-A, YKL097C, YKL112W, YKL113C, YKL142W, YKL150W, YKL151C, YLL063C, YLR049C, YLR055C, YLR056W, YLR103C, YLR104W, YLR105C, YLR286C, YLR300W, YLR354C, YLR367W, YLR378C, YLR380W, YLR382C, YLR383W, YLR397C, YLR399C, YLR400W, YLR437C, YLR438W, YLR439W, YML003W, YML004C, YML027W, YML028W, YML100W, YML101C, YML102C-A, YML102W, YML103C, YML131W, YMR014W, YMR026C, YMR027W, YMR056C, YMR070W, YMR076C, YMR077C, YMR144W, YMR165C, YMR179W, YMR199W, YMR215W, YMR261C, YMR262W, YMR279C, YMR304C-A, YMR305C, YMR306W, YNL078W, YNL079C, YNL088W, YNL089C, YNL154C, YNL231C, YNL238W, YNL241C, YNL273W, YNL274C, YNL289W, YNL295W, YNL297C, YNL298W, YNL312W, YNL313C, YNR009W, YNR016C, YNR018W, YNR044W, YOR066W, YOR074C, YOR075W, YOR076C, YOR077W, YOR236W, YOR246C, YOR247W, YOR248W, YOR268C, YOR269W, YOR372C, YOR373W, YPL018W, YPL019C, YPL050C, YPL056C, YPL081W, YPL082C, YPL126W, YPL127C, YPL152W, YPL153C, YPL198W, YPL230W, YPR008W, YPR017C, YPR018W, YPR075C, YPR119W, YPR120C	YOL017W, YKL045W, YMR192W, YPL240C, YJL118W, YKL075C, YLR030W, YPL014W, YPL016W, YCL017C, YCL057W, YIL156W, YNL283C, YOR043W, YER124C, YHR149C, YBR070C, YNL189W, YBR071W, YOR324C, YOR354C, YPL137C, YER059W, YLR161W, YNL312W, YNL102W, YLR042C, YNL064C, YLR103C, YOL126C, YER095W, YER070W, YOL119C, YJL196C, YNR009W, YPL127C, YLR297W, YLR050C, YMR186W, YMR034C, YNL043C, YOR248W, YPL075W, YBL051C, YBR089W, YFL068W, YGR203W	ABF1, ASH1, FKH1, FKH2, MET28, NDD1, REB1, RTG3, STB1, STB2, STB3, SUM1, SUT1, SWI4, SWI6, YDR026C	"A | 0.677 0.012 0.039 0.005 0.018 0.097 0.041 
C | 0.056 0.954 0.009 0.935 0.030 0.021 0.558 
G | 0.091 0.012 0.946 0.009 0.934 0.009 0.069 
T | 0.176 0.022 0.006 0.051 0.018 0.873 0.332 
"
MCM1	YMR043W, FUN80	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	TTTCCTAATCGGGAAA	8.5297e-89	10.15	15.6864	16.39	"Transcription factor involved in cell-type-specific transcription and pheromone response; plays a central role in the formation of both repressor and activator complexes
"	YAL037W, YAL038W, YAL040C, YAR018C, YBL026W, YBL059W, YBL104C, YBR037C, YBR038W, YBR044C, YBR060C, YBR122C, YBR124W, YCR018C-A, YCR019W, YCR024C, YDL044C, YDL134C, YDR042C, YDR146C, YDR147W, YDR148C, YDR150W, YDR179C, YDR179W-A, YDR210W-D, YDR224C, YDR225W, YDR278C, YDR316W-A, YDR316W-B, YDR389W, YDR420W, YDR434W, YDR451C, YDR452W, YDR461W, YDR528W, YEL012W, YEL040W, YEL044W, YEL045C, YEL046C, YER007C-A, YER044C, YER069W, YER071C, YER072W, YER111C, YER112W, YER136W, YER138C, YER159C-A, YER160C, YFL026W, YFL027C, YFL034W, YGL032C, YGL116W, YGL201C, YGL202W, YGR041W, YGR047C, YGR048W, YGR089W, YGR092W, YGR123C, YGR168C, YGR190C, YGR191W, YHR005C, YHR098C, YHR099W, YHR151C, YHR152W, YIL015W, YIL069C, YIL076W, YIL077C, YIL123W, YIL158W, YJL003W, YJL004C, YJL049W, YJL051W, YJL148W, YJL155C, YJL158C, YJL159W, YJL160C, YJL194W, YJL196C, YJR091C, YJR092W, YKL039W, YKL040C, YKL058W, YKL059C, YKL072W, YKL163W, YKL164C, YKR036C, YKR040C, YKR042W, YKR068C, YKR069W, YLR036C, YLR084C, YLR105C, YLR131C, YLR166C, YLR167W, YLR189C, YLR190W, YLR261C, YLR262C, YLR273C, YLR274W, YLR302C, YML052W, YML053C, YML109W, YML110C, YMR144W, YMR231W, YMR253C, YNL053W, YNL056W, YNL058C, YNL145W, YNL289W, YNL298W, YNL331C, YNR028W, YNR044W, YNR054C, YNR062C, YNR063W, YOL011W, YOL012C, YOL066C, YOL115W, YOL117W, YOL118C, YOL151W, YOR066W, YOR108W, YOR236W, YOR315W, YOR354C, YOR360C, YOR388C, YOR389W, YPL044C, YPL275W, YPL276W, YPL277C, YPL278C, YPR007C, YPR109W, YPR112C, YPR113W, YPR119W	YBL113C, YBL086C, YBR004C, YBR034C, YBR006W, YBR036C, YCR012W, YCL055W, YCR016W, YDR366C, YDR434W, YER116C, YER145C, YER118C, YER178W, YGL232W, YGL234W, YHL010C, YHL044W, YGR280C, YGR282C, YIL110W, YIL142W, YIL116W, YKR075C, YLR214W, YML112W, YMR043W, YMR014W, YMR045C, YML117W-A, YMR046W-A, YNL018C, YNL050C, YNL085W, YOL012C, YOL043C, YOL013W-A, YOR225W, YPL174C, YPL239W, YPL209C, YPL243W, YKL122C, YMR109W, YAL037W, YBR219C, YBR162C, YDL062W, YDL096C, YDL128W, YDR222W, YEL042W, YGR156W, YHR117W, YHR148W, YJL119C, YKL043W, YKL045W, YKL049C, YLR025W, YLR056W, YLR027C, YLR029C, YLR432W, YLR436C, YMR194W, YMR226C, YNL239W, YNL241C, YNL243W, YOR065W, YOR006C, YOR039W, YPL049C, YPL019C, YPL051W, YPL053C, YPR139C, YCR057C, YDR301W, YPL064C, YBL083C, YBR029C, YBR005W, YCR009C, YCR037C, YCR039C, YCR013C, YDR034C-A, YDR365W-B, YDR429C, YDR399W, YER144C, YGL168W, YGL231C, YGR275W, YHL045W, YHL047C, YIL077C, YIL109C, YJR047C, YJR086W, YMR009W, YML115C, YNL051W, YNL084C, YOL011W, YOL014W, YOL048C, YOR220W, YOR252W, YOR222W, YOR226C, YPL204W, YPL206C, YAL035C-A, YBR220C, YDL125C, YDL063C, YDL095W, YDL129W, YDL067C, YDR187C, YEL011W, YEL015W, YEL076C, YEL017C-A, YFR033C, YGL012W, YGL044C, YGR122C-A, YGR155W, YGR157W, YHR175W, YHR145C, YHR179W, YJL080C, YJL082W, YJL086C, YKL104C, YKL044W, YKL079W, YNL274C, YOR036W, YOR068C, YPL014W, YPL048W, YPL050C, YOR382W, YPR138C, YBR126C, YDR342C, YBR092C, YCR082W, YDR096W, YDR128W, YFL045C, YGR005C, YHR081W, YHR083W, YHR025W, YJL016W, YJL020C, YIR034C, YJR143C, YJR147W, YJR118C, YJR149W, YLR340W, YLR374C, YMR132C, YMR103C, YMR105C, YOL136C, YOL106W, YOR315W, YOR287C, YOR317W, YOR289W, YOR351C, YPR016C, YPR020W, YPR052C, YPL283C, YBR251W, YBR283C, YDR276C, YER053C, YGL103W, YGL137W, YGR184C, YGR248W, YGR250C, YIL016W, YJL151C, YJL183W, YLR126C, YML056C, YML085C, YMR314W, YMR316W, YNR030W, YOR135C, YPL146C, YHR183W, YBR093C, YBR067C, YBR097W, YCR075C, YDR127W, YDR525W, YDR497C, YFR004W, YFL013C, YGR028W, YGR030C, YHR050W, YHR084W, YJL017W, YJL021C, YJR111C, YJR113C, YKL013C, YJR146W, YKL017C, YLL027W, YLL031C, YLR304C, YLR306W, YLR339C, YMR072W, YMR074C, YMR104C, YMR136W, YNL110C, YOL137W, YOL109W, YOR284W, YOR344C, YOR286W, YOR320C, YPL265W, YPR045C, YCL012W, YBR254C, YBR256C, YDR277C, YDR340W, YER023W, YER025W, YER057C, YGL136C, YGR211W, YGR183C, YGR217W, YIL015W, YIL051C, YJL208C, YJL212C, YKL199C, YKL142W, YLR153C, YLR155C, YLR157C, YML053C, YML055W, YML086C, YML028W, YMR251W-A, YNL300W, YNR025C, YNL336W, YPL111W, YER042W, YBR012W-B, YCR046C, YCR021C, YDR074W, YDR442W, YDR412W, YGL209W, YGR284C, YIL088C, YIL122W, YJR030C, YKR049C, YKR020W, YKR053C, YLR257W, YML123C, YNL024C, YOL019W, YOL052C-A, YOL054W, YOR261C, YOR265W, YOR203W, YOR267C, YPL213W, YPL247C, YKL098W, YAR008W, YAL044C, YAR015W, YBR167C, YBR169C, YDL102W, YDR226W, YER002W, YGR130C, YJL063C, YKL051W, YKL084W, YLR066W, YLR068W, YLR438C-A, YML004C, YML006C, YML008C, YMR202W, YOR043W, YOR047C, YOR385W, YBR041W, YCL058C, YCR018C-A, YCR049C, YCL064C, YCR020W-B, YDR011W, YER119C, YER150W, YER152C, YGR283C, YGR285C, YHL021C, YIL123W, YKR052C, YLR221C, YLR225C, YML120C, YML124C, YNR066C, YOL053W, YOR202W, YJR148W, YML100W, YAL040C, YAL012W, YAL042W, YAR007C, YAL043C-A, YBR166C, YDL075W, YER003C, YEL055C, YGL046W, YFR043C, YGR127W, YGR129W, YGR104C, YGR133W, YJL056C, YJL060W, YKL081W, YKL052C, YKL053W, YKL085W, YLR034C, YLR438W, YML005W, YMR195W, YOR076C, YOR078W, YOR388C, YPL028W, YDR343C, YBR070C, YBR106W, YCR084C, YDL041W, YDR171W, YDR502C, YDR533C, YFL018C, YFR015C, YFL022C, YFR017C, YGR038C-B, YGR041W, YHR093W, YHR065C, YIR005W, YIR038C, YKL024C, YLR378C, YLR380W, YMR145C, YOL086C, YOL118C, YOR355W, YPL276W, YPR010C, YBL064C, YBR297W, YDR288W, YDR290W, YGL117W, YHR215W, YIL060W, YKL182W, YLR158C, YLR160C, YLR194C, YLR134W, YML031W, YML062C, YML093W, YMR260C, YMR318C, YMR296C, YNR035C, YPL088W, YPL092W, YPL156C, YFL014W, YJL062W, YBR071W, YBR105C, YCR088W, YDR167W, YDR473C, YGR008C, YHR088W, YHR060W, YIR004W, YIR035C, YJL027C, YJR150C, YLL039C, YLL041C, YLR343W, YLR375W, YLR379W, YLR349W, YMR077C, YMR140W, YMR083W, YNL150W, YOR298C-A, YPL275W, YPR055W, YAR071W, YAR075W, YBL032W, YBR290W, YBR296C, YDR346C, YER031C, YER035W, YER062C, YER037W, YGR251W, YGR189C, YGR221C, YGR253C, YGR257C, YIL053W, YIL057C, YHR216W, YJL188C, YJL158C, YKL210W, YKL150W, YKL214C, YLR193C, YML090W, YML094W, YMR263W, YNL308C, YNR001C, YNR003C, YNR038W, YPL087W, YPL119C, YER060W, YCL067C, YCR059C, YER127W, YER159C, YER133W, YIL162W, YJR032W, YJR064W, YJR096W, YJR070C, YKR024C, YKR059W, YKR093W, YLR259C, YLR295C, YML127W, YNL067W, YOL058W, YOR273C, YPL252C, YPL193W, YIL114C, YKL109W, YAL023C, YAR028W, YAR030C, YBR205W, YBR175W, YBR207W, YDL084W, YDR238C, YEL026W, YGR138C, YGR109W-B, YHR196W, YJL065C, YKL062W, YKL096W, YKL127W, YLR074C, YLR044C, YMR208W, YOR085W, YPL035C, YBR088C, YDR019C, YDR047W, YER126C, YER130C, YHL025W, YHR007C, YGR295C, YIL127C, YIL097W, YKR058W, YLR258W, YLR231C, YLR292C, YLR294C, YML126C, YML128C, YMR058W, YML132W, YMR031C, YNL066W, YOL057W, YOL059W, YOL032W, YOR238W, YPL188W, YPL192C, YJR127C, YAR027W, YAR029W, YBR202W, YBR238C, YDL141W, YDL145C, YGL022W, YGL054C, YFR051C, YGR108W, YGR137W, YGR139W, YHR193C, YKL091C, YNL260C, YPL061W, YPL004C, YBL007C, YBR078W, YCR091W, YDL048C, YCR097W, YDR146C, YDR510W, YFL028C, YFL059W, YFR024C-A, YHR071W, YJL002C, YJL034W, YKL030W, YKL001C, YLL018C-A, YLR326W, YMR120C, YNL197C, YOR335C, YPR004C, YPR136C, YOR383C, YBL070C, YCL038C, YDR292C, YDR322C-A, YDR294C, YER043C, YER070W, YGR196C, YGR198W, YIL066C, YIL036W, YJL193W, YKL186C, YLR136C, YML074C, YMR298W, YMR300C, YMR272C, YBR145W, YDL014W, YCR096C, YDR111C, YDR174W, YDR481C, YDR513W, YFR018C, YFL027C, YFR022W, YFR024C, YGR014W, YGR078C, YGR048W, YGR080W, YIR043C, YIR016W, YJR129C, YKL029C, YJR133W, YLL047W, YLR355C, YLR387C, YLR325C, YMR116C, YMR090W, YMR121C, YNL158W, YNL190W, YNL160W, YNL162W, YOL119C, YOL151W, YOL093W, YOL155C, YPL281C, YPR061C, YPR002C-A, YBL069W, YBL042C, YBR298C, YCL031C, YBR302C, YDL239C, YDR321W, YDR354W, YDR297W, YDR358W, YER066C-A, YER067W, YER098W, YGL154C, YJL164C, YKL183W, YKL156W, YLR201C, YLR203C, YML100W-A, YMR303C, YNR009W, YPL129W, YER091C, YGL192W, YBR054W, YCR034W, YCR069W, YDR056C, YER138C, YHL008C, YHL009W-A, YIL134W, YIL138C, YJR108W, YJR046W, YLR297W, YLR270W, YMR006C, YMR037C, YNL073W, YNL075W, YOL041C, YOL072W, YOR215C, YOR247W, YOR281C, YOR251C, YPL229W, YPL199C, YPL231W, YPL260W, YNL054W, YAL060W, YAL062W, YBR183W, YDR210W-D, YDR270W, YDR212W, YDR244W, YEL034W, YEL065W, YGL031C, YGL037C, YGR146C, YGR176W, YGR119C, YHR141C, YJL141C, YKL131W, YKL135C, YOR089C, YBR055C, YBL107W-A, YBR057C, YCR066W, YCR005C, YCR035C, YDR055W, YDR087C, YDR029W, YDR425W, YDR427W, YER134C, YGL190C, YGL222C, YGL253W, YGL226C-A, YHR015W, YHR019C, YIL165C, YIL105C, YIL107C, YIL171W, YJR103W, YJR105W, YJR043C, YJR045C, YKR100C, YMR062C, YMR005W, YMR007W, YNL104C, YNL043C, YNL076W, YOL003C, YOL065C, YOL038W, YOL009C, YOL071W, YOR212W, YOR250C, YOR282W, YPL196W, YPL228W, YPL230W, YPL259C, YPL202C, YPL263C, YKL009W, YAL058C-A, YAL061W, YBR214W, YDL147W, YDR273W, YGR143W, YGR145W, YGR177C, YHR135C, YHR137W, YJL074C, YJL076W, YJL142C, YKL069W, YKL100C, YKL132C, YLR117C, YML016C, YML018C, YMR181C, YMR243C, YMR215W, YMR217W, YMR250W, YNL264C, YNL234W, YNL266W, YNL268W, YOR056C, YOR058C, YOR092W, YOR094W, YPL012W, YPR103W, YDR152W, YFL037W, YFR001W, YGR087C, YHR046C, YJL012C, YLL024C, YLL026W, YLR334C, YMR158C-B, YNL171C, YOR343C-B, YPR008W, YPR074C, YCL040W, YCL042W, YIL040W, YKL198C, YLR180W, YML076C, YNL327W, YBR084W, YDL059C, YDR121W, YHR047C, YKL040C, YLL019C, YLL021W, YLR022C, YLR327C, YNL166C, YOL101C, YOR306C, YOR342C, YDR299W, YER050C, YER079W, YGR237C, YJL200C, YLR177W, YLR149C, YML109W, YNL007C, YNR017W, YPL107W	ASH1, FKH1, FKH2, HMRA2, NDD1, SWI6	"A | 0.078 0.079 0.148 0.017 0.001 0.160 0.807 0.875 0.406 0.299 0.356 0.014 0.019 0.691 0.798 0.882 
C | 0.126 0.010 0.085 0.969 0.981 0.186 0.040 0.020 0.041 0.342 0.068 0.001 0.013 0.088 0.100 0.008 
G | 0.014 0.067 0.092 0.007 0.001 0.169 0.108 0.050 0.025 0.148 0.424 0.981 0.938 0.067 0.023 0.041 
T | 0.782 0.844 0.675 0.007 0.017 0.486 0.045 0.055 0.528 0.212 0.152 0.004 0.030 0.154 0.079 0.069 
"
MET28	YIR017C	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	TTGACGTCAC	0.0008154198	8.82	6.57606	9.94	"Basic leucine zipper (bZIP) transcriptional activator in the Cbf1p-Met4p-Met28p complex, participates in the regulation of sulfur metabolism
"	YBR122C, YBR124W, YCR081W, YDL050C, YDL089W, YDL090C, YDL149W, YDL151C, YDL192W, YDR030C, YDR031W, YDR048C, YDR098C-A, YDR098C-B, YDR113C, YDR115W, YDR144C, YDR145W, YDR317W, YDR443C, YDR444W, YEL010W, YER087W, YER118C, YER120W, YGR076C, YGR145W, YGR156W, YGR188C, YGR218W, YIL038C, YIL085C, YIL086C, YIL087C, YIL161W, YJR007W, YJR069C, YJR071W, YKL014C, YKL075C, YKL076C, YKL221W, YKL222C, YKR051W, YKR083C, YLR023C, YLR047C, YLR048W, YLR064W, YLR067C, YLR068W, YLR239C, YLR240W, YMR098C, YMR126C, YMR178W, YMR211W, YMR238W, YMR270C, YNL009W, YNL038W, YNL082W, YNL141W, YNL210W, YNL211C, YOL003C, YOL049W, YOL050C, YOL076W, YOL077C, YOL093W, YOL094C, YOR021C, YOR124C, YOR249C, YOR339C, YPL041C, YPL043W, YPR047W, YPR056W	YLR216C, YFR033C, YBR093C, YBR129C, YBL058W, YDR281C, YKL142W, YLR183C, YOR011W, YLR099C, YOR074C, YOR298C-A, YDR344C, YNL310C, YNR005C, YNL065W, YDL146W, YDR204W, YDR206W, YGL055W, YNL289W, YDR209C, YPL061W, YKL001C, YML099C, YLR297W, YOR027W, YGL255W, YMR034C, YJL076W, YDL029W, YOL101C	MBP1, STB1, STB5, SUM1, SUT1, SWI4, SWI6	"A | 0.193 0.092 0.266 0.415 0.097 0.046 0.061 0.052 0.734 0.061 
C | 0.116 0.098 0.120 0.042 0.750 0.097 0.055 0.562 0.024 0.456 
G | 0.124 0.024 0.462 0.384 0.102 0.816 0.070 0.144 0.040 0.145 
T | 0.567 0.786 0.152 0.159 0.051 0.041 0.814 0.242 0.202 0.338 
"
MET31	YPL038W	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	TGTGGCGC	1.122776e-05	9.97	12.0045	10.74	"Zinc-finger DNA-binding protein, involved in transcriptional regulation of the methionine biosynthetic genes, similar to Met32p
"	YAL012W, YAR009C, YBR012W-A, YBR012W-B, YBR048W, YDL058W, YDL059C, YDL060W, YDL061C, YDL134C, YDR042C, YDR048C, YDR063W, YDR064W, YDR065W, YDR098C, YDR210W-D, YDR500C, YDR501W, YDR522C, YEL072W, YER092W, YGL030W, YGL031C, YGL134W, YGL184C, YGR084C, YGR204W, YGR221C, YHR028C, YHR193C, YHR194W, YJL060W, YJL148W, YJL191W, YJL192C, YJL210W, YJL212C, YJR100C, YJR137C, YJR138W, YLL061W, YLL062C, YLR027C, YLR035C-A, YLR043C, YLR074C, YLR075W, YLR105C, YLR166C, YLR167W, YLR179C, YLR180W, YLR368W, YML055W, YML056C, YMR014W, YMR193C-A, YMR194W, YNL025C, YNL191W, YNL277W, YNL337W, YNR050C, YOL121C, YOL139C, YPL198W, YPR167C, YPR168W	YGR155W, YMR189W, YFL013W-A, YFR006W, YJL212C, YNL300W, YLR099C, YLR101C, YDR502C, YPL274W, YLR191W, YMR180C, YBR170C, YKL095W, YMR034C, YPL038W, YFR030W, YLR362W	MIG1, RPN4, STP3	"A | 0.165 0.015 0.010 0.010 0.010 0.010 0.060 0.164 
C | 0.095 0.010 0.010 0.010 0.010 0.970 0.010 0.393 
G | 0.095 0.965 0.010 0.970 0.970 0.010 0.755 0.119 
T | 0.645 0.010 0.970 0.010 0.010 0.010 0.175 0.323 
"
MET32	YDR253C	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	AAACTGTGGC	2.04775e-09	8.91	15.5268	12.65	"Zinc-finger DNA-binding protein, involved in transcriptional regulation of the methionine biosynthetic genes, similar to Met31p
"	YAL012W, YAL016W, YAL034W-A, YAL035C-A, YAL035W, YAL036C, YAR009C, YBL025W, YBL089W, YBR011C, YBR019C, YBR020W, YBR127C, YBR150C, YBR151W, YBR167C, YBR168W, YBR187W, YBR213W, YBR214W, YCR020C-A, YCR028C, YCR081W, YCR106W, YDL058W, YDL059C, YDL132W, YDR048C, YDR142C, YDR179C, YDR179W-A, YDR207C, YDR208W, YDR210W-D, YDR256C, YDR372C, YDR373W, YDR472W, YDR523C, YEL004W, YEL005C, YEL011W, YEL072W, YER007C-A, YER015W, YER049W, YER070W, YER091C, YER092W, YER134C, YER138C, YFR015C, YFR030W, YGL133W, YGL134W, YGL143C, YGL148W, YGL150C, YGL172W, YGL173C, YGL184C, YGL201C, YGL235W, YGL237C, YGR109C, YGR109W-A, YGR109W-B, YGR145W, YGR150C, YGR177C, YGR187C, YGR188C, YGR204W, YGR206W, YGR218W, YHL017W, YHR117W, YHR156C, YHR157W, YIL014W, YIL069C, YIL100W, YIL101C, YIL113W, YIL114C, YIL120W, YJL023C, YJL060W, YJL148W, YJR010W, YJR045C, YJR046W, YJR069C, YJR071W, YJR100C, YJR137C, YJR138W, YKL039W, YKL040C, YKL153W, YKL178C, YKL202W, YKL203C, YKR036C, YKR096W, YLR011W, YLR046C, YLR089C, YLR090W, YLR092W, YLR174W, YLR176C, YLR177W, YLR179C, YLR180W, YLR186W, YLR221C, YLR303W, YLR373C, YLR375W, YLR428C, YLR430W, YML072C, YMR043W, YMR065W, YMR194W, YMR260C, YNL006W, YNL007C, YNL113W, YNL115C, YNL146W, YNL232W, YNL258C, YNL277W, YNL299W, YNL321W, YNL322C, YNR006W, YNR054C, YOL041C, YOL064C, YOL083W, YOR093C, YOR094W, YOR106W, YOR297C, YOR298W, YPL262W, YPL263C, YPR158W-A, YPR158W-B, YPR167C, YPR168W	YKR039W, YMR040W, YDR193W, YDR253C, YPL016W, YLL034C, YMR111C, YOL002C, YLR078C, YNL133C, YIL134W, YPL076W, YMR034C, YDL183C	CBF1, MET4, PHO4, TYE7	"A | 0.514 0.912 0.685 0.029 0.001 0.001 0.001 0.001 0.001 0.001 
C | 0.314 0.001 0.001 0.629 0.001 0.001 0.001 0.001 0.001 0.912 
G | 0.029 0.001 0.200 0.171 0.001 0.997 0.001 0.997 0.997 0.001 
T | 0.143 0.086 0.114 0.171 0.997 0.001 0.997 0.001 0.001 0.086 
"
MET4	YNL103W	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	AAAAAATGTGGTGCC	2.074708e-14	11.18	18.331	16.01	"Leucine-zipper transcriptional activator, responsible for the regulation of the sulfur amino acid pathway, requires different combinations of the auxiliary factors Cbf1p, Met28p, Met31p and Met32p
"	YAL012W, YBR011C, YBR077C, YBR078W, YDL024C, YDL058W, YDL059C, YER092W, YFR030W, YFR031C, YFR035C, YGL184C, YGR055W, YGR060W, YGR157W, YGR204W, YGR239C, YHR136C, YHR137W, YIL074C, YIR007W, YIR017C, YIR018W, YJL048C, YJL078C, YJL100W, YJL101C, YJL210W, YJL212C, YKL001C, YKR073C, YLL037W, YLL039C, YLL044W, YLL046C, YLR092W, YLR179C, YLR180W, YLR213C, YLR214W, YLR431C, YLR432W, YMR070W, YNL016W, YNL017C, YNL030W, YNL031C, YNL034W, YNL097C, YNL220W, YNL221C, YNL277W, YOR136W, YOR236W, YPL164C, YPL198W, YPR170C, YPR171W	No Data	CBF1, MET32, TYE7	"A | 0.696 0.796 0.696 0.898 0.603 0.396 0.001 0.001 0.001 0.001 0.103 0.001 0.001 0.097 0.101 
C | 0.001 0.201 0.203 0.001 0.001 0.303 0.001 0.001 0.001 0.195 0.101 0.401 0.001 0.501 0.597 
G | 0.302 0.002 0.101 0.100 0.001 0.301 0.001 0.997 0.295 0.803 0.795 0.001 0.997 0.301 0.001 
T | 0.001 0.001 0.001 0.001 0.395 0.001 0.997 0.001 0.703 0.001 0.001 0.597 0.001 0.101 0.301 
"
MGA1	YGR249W	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	TTCTAGA	0.002812204	5.61	7.37788	7.54	"Protein similar to heat shock transcription factor; multicopy suppressor of pseudohyphal growth defects of ammonium permease mutants
"	YAL027W, YAL037W, YBL018C, YBL059W, YBR041W, YBR086C, YBR087W, YBR159W, YBR166C, YBR167C, YBR168W, YBR216C, YBR217W, YCL002C, YCL006C, YCL007C, YCL008C, YCL009C, YCL010C, YCL054W, YCL055W, YCL056C, YCR002C, YCR004C, YCR005C, YCR006C, YCR008W, YCR012W, YCR028C, YDL044C, YDL089W, YDL090C, YDL206W, YDL237W, YDL238C, YDR030C, YDR031W, YDR067C, YDR068W, YDR125C, YDR126W, YDR146C, YDR147W, YDR210W-D, YDR279W, YDR284C, YDR285W, YDR314C, YDR322C-A, YDR323C, YDR370C, YDR371W, YDR372C, YDR373W, YDR393W, YDR473C, YEL004W, YEL005C, YEL030W, YER007C-A, YER013W, YER044C, YER077C, YER133W, YER138C, YFL012W, YFL013C, YFR023W, YGL204C, YGL230C, YGL248W, YGR024C, YGR040W, YGR073C, YGR075C, YGR150C, YGR166W, YGR168C, YGR191W, YGR207C, YGR208W, YGR218W, YHR028C, YHR072W, YHR072W-A, YHR155W, YHR156C, YHR157W, YIL035C, YIL048W, YIL139C, YJL003W, YJL004C, YJL023C, YJL030W, YJL031C, YJL060W, YJL145W, YJR007W, YJR054W, YJR075W, YJR082C, YJR088C, YJR089W, YJR098C, YJR099W, YKL039W, YKL040C, YKL058W, YKL059C, YKL068W, YKL071W, YKL072W, YKL077W, YKL177W, YKL179C, YKL220C, YKR087C, YKR103W, YLR367W, YMR071C, YMR072W, YMR097C, YMR098C, YMR110C, YMR125W, YMR126C, YMR134W, YMR194W, YMR257C, YMR259C, YMR267W, YNL004W, YNL005C, YNL100W, YNL101W, YNR055C, YOL023W, YOL036W, YOL064C, YOL082W, YOR001W, YOR004W, YOR030W, YOR043W, YOR044W, YOR093C, YOR094W, YOR102W, YOR185C, YOR186W, YOR209C, YOR210W, YOR258W, YOR280C, YOR282W, YOR285W, YOR287C, YOR296W, YOR297C, YOR298W, YOR304W, YOR315W, YOR318C, YOR319W, YOR360C, YPL069C, YPL070W, YPL071C, YPL073C, YPL122C, YPL125W, YPL157W, YPL158C, YPL202C, YPL235W, YPL236C, YPL254W, YPR007C, YPR104C, YPR107C, YPR108W, YPR158W-A, YPR158W-B, YPR172W, YPR179C, YPR180W, YPR197C	YMR220W, YOR039W, YPL053C, YNL051W, YDR041W, YHR145C, YHR179W, YOR038C, YPL016W, YLR156W, YBR093C, YDR099W, YFR006W, YLR341W, YOR320C, YCL016C, YCL018W, YDR281C, YMR289W, YDR442W, YMR020W, YNR069C, YDL102W, YFR046C, YGR132C, YMR173W, YNL283C, YOR043W, YNR066C, YJR148W, YML111W, YGR133W, YLR099C, YOR074C, YMR145C, YLR158C, YDR538W, YCL025C, YGL112C, YLR159W, YPL191C, YNL289W, YNL229C, YDR246W, YOR268C, YDL143W, YDR237W, YGR135W, YKL120W, YMR173W-A, YPL063W, YKL001C, YKL159C, YGR046W, YPL163C, YBR024W, YBR026C, YIL102C, YKR067W, YKR099W, YNL106C, YHR136C, YNL293W, YLR302C, YBR244W, YEL037C, YHR135C, YBL019W, YBR149W, YFL068W, YJL044C, YKL007W, YGL130W	None	"A | 0.068 0.025 0.192 0.008 0.933 0.041 0.910 
C | 0.071 0.025 0.739 0.028 0.011 0.090 0.052 
G | 0.079 0.010 0.043 0.010 0.034 0.467 0.017 
T | 0.782 0.940 0.026 0.954 0.022 0.401 0.021 
"
MIG1	YGL035C, TDS22, SSN1, CAT4	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	CTTACCCCACGG	4.442616e-08	11.63	16.2838	15.51	"Transcription factor involved in glucose repression; sequence specific DNA binding protein containing two Cys2His2 zinc finger motifs; regulated by the SNF1 kinase and the GLC7 phosphatase
"	YBL029W, YBL043W, YBR120C, YBR277C, YBR279W, YBR280C, YCR073C, YCR082W, YDL089W, YDL090C, YDL149W, YDL151C, YDL154W, YDL189W, YDL190C, YDL246C, YDR028C, YDR029W, YDR040C, YDR041W, YDR441C, YDR442W, YDR535C, YDR536W, YEL069C, YEL070W, YFR023W, YGL050W, YGL121C, YGL170C, YGL171W, YGR083C, YGR165W, YGR241C, YGR243W, YHR062C, YIL099W, YIL170W, YIL171W, YIL172C, YJL023C, YJL216C, YJL219W, YJL221C, YJR054W, YJR056C, YJR135C, YJR159W, YKL132C, YKL208W, YLR074C, YLR075W, YLR229C, YLR241W, YLR272C, YLR339C, YLR341W, YML124C, YMR017W, YMR019W, YMR077C, YMR163C, YMR227C, YMR228W, YMR260C, YNL126W, YNL247W, YNL248C, YOL022C, YOL063C, YOL090W, YOL105C, YOL121C, YOL156W, YOL157C, YOR109W, YOR249C, YPL180W, YPL182C, YPL200W, YPL201C, YPR114W, YPR121W, YPR136C, YPR176C, YPR178W, YPR184W, YPR198W	YLR216C, YDR222W, YKL043W, YOR065W, YPL017C, YPL021W, YLR217W, YMR011W, YFR033C, YLR089C, YPL016W, YPL018W, YBR126C, YDR342C, YMR103C, YNR028W, YBR093C, YDR099W, YJR146W, YLL061W, YMR104C, YNL144C, YDR277C, YDR281C, YGR243W, YKL142W, YKR053C, YOR203W, YMR173W, YPL057C, YJR025C, YPL248C, YOR386W, YDR343C, YDR171W, YFL051C, YNL125C, YOL150C, YOR298W, YBR297W, YHR215W, YLR162W, YML091C, YMR291W, YBR069C, YBR071W, YBR101C, YFL052W, YOR298C-A, YPR027C, YOR221C, YAR071W, YBR296C, YER035W, YHR214W-A, YML090W, YBR050C, YHL032C, YLR234W, YML131W, YOL002C, YDR345C, YBR051W, YLR294C, YNL098C, YGR137W, YMR173W-A, YPL061W, YOR394W, YDL048C, YOR383C, YDL242W, YGL157W, YMR300C, YFL054C, YHR096C, YNL160W, YOL151W, YBR298C, YDR297W, YIL067C, YNR044W, YHR018C, YLR270W, YGR146C, YHR136C, YMR182C, YPR159W, YKR098C, YLR269C, YMR062C, YGR177C, YKL067W, YLR081W, YDL023C, YJL012C, YBL051C, YPL134C, YBR089W, YDL022W, YFL036W, YGR086C, YHR104W, YOL101C, YER079W, YML048W	AFT1, AFT2, GIS1, HMS1, MET31, MIG3, MSN2, MSN4, NRG1, PDR1, PDR3, PDR8, RGM1, RGT1, RPH1, RSF2, STP1, STP2, SUT1, UME6, USV1	"A | 0.300 0.030 0.010 0.830 0.040 0.010 0.386 0.010 0.920 0.050 0.280 0.337 
C | 0.680 0.040 0.010 0.010 0.881 0.929 0.594 0.970 0.010 0.930 0.010 0.129 
G | 0.010 0.030 0.140 0.040 0.069 0.051 0.010 0.010 0.060 0.010 0.700 0.525 
T | 0.010 0.900 0.840 0.120 0.010 0.010 0.010 0.010 0.010 0.010 0.010 0.010 
"
MIG2	YGL209W, MLZ1	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	TACCCCGCAAT	0.0005263308	7.64	14.9189	13.4	"Protein containing zinc fingers, involved in repression, along with Mig1p, of SUC2 (invertase) expression by high levels of glucose; binds to Mig1p-binding sites in SUC2 promoter
"	YAR009C, YBL068W, YBL070C, YBR032W, YBR065C, YBR109C, YBR110W, YBR120C, YBR185C, YBR186W, YBR232C, YDL091C, YDL092W, YDL094C, YDL245C, YDL246C, YDR030C, YDR031W, YDR117C, YDR118W, YDR136C, YDR138W, YDR164C, YDR165W, YDR294C, YDR343C, YDR355C, YDR411C, YDR412W, YDR473C, YEL069C, YEL070W, YER133W, YER134C, YGL195W, YGR038C-B, YGR188C, YHR005C-A, YIL035C, YIL115C, YJL049W, YJL148W, YJR010C-A, YJR088C, YJR089W, YJR100C, YJR158W, YJR159W, YKL167C, YKR003W, YLL014W, YLR199C, YLR200W, YLR273C, YLR274W, YML072C, YMR052W, YMR131C, YMR283C, YNL111C, YNL136W, YNL137C, YNL210W, YNL211C, YNR054C, YOL023W, YOL083W, YOL099C, YOR021C, YOR059C, YOR214C, YOR307C, YOR365C, YOR367W, YOR368W, YPL267W, YPR134W	YEL012W, YMR011W, YPL016W, YMR254C, YMR072W, YNL306W, YER123W, YNL040W, YDR071C, YOL053W, YDL135C, YLR101C, YOR357C, YOR298W, YIR041W, YMR110C, YBR296C, YNL312W, YHR006W, YLR294C, YMR027W, YBR114W, YHR101C, YBR111C, YER100W, YHR197W	RGM1, SUT1, USV1	"A | 0.150 0.720 0.010 0.010 0.010 0.010 0.230 0.010 0.890 0.400 0.210 
C | 0.070 0.060 0.970 0.940 0.970 0.970 0.010 0.940 0.010 0.160 0.070 
G | 0.070 0.180 0.010 0.010 0.010 0.010 0.750 0.040 0.090 0.050 0.020 
T | 0.710 0.040 0.010 0.040 0.010 0.010 0.010 0.010 0.010 0.390 0.700 
"
MIG3	YER028C	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	TACCCCGCATT	6.930266e-05	11.67	14.5267	13.38	"Probable transcriptional repressor involved in response to toxic agents such as hydroxyurea that inhibit ribonucleotide reductase; phosphorylation by Snf1p or the Mec1p pathway inactivates Mig3p, allowing induction of damage response genes
"	YAR050W, YBR012W-A, YBR012W-B, YBR099C, YBR229C, YCR018C-A, YCR019W, YDL214C, YDL245C, YDL246C, YDR040C, YDR041W, YDR042C, YDR084C, YDR343C, YEL070W, YER189W, YER190W, YFR017C, YHR033W, YJL148W, YJL219W, YJL221C, YJR158W, YJR159W, YLL004W, YLL005C, YLR011W, YMR258C, YOL156W, YOL157C, YOR236W, YPR142C	No Data	AFT2, CAT8, CEP3, CIN5, GIS1, GSM1, MIG1, MSN2, MSN4, NRG1, PDR1, PDR8, RGM1, RGT1, RPH1, RSF2, STB5, STP1, STP2, SUT1, SUT2, UME6, USV1, YER130C, YER184C, YPR196W, YRM1	"A | 0.218 0.750 0.010 0.010 0.010 0.010 0.210 0.010 0.840 0.327 0.250 
C | 0.109 0.100 0.970 0.950 0.970 0.970 0.010 0.911 0.020 0.109 0.100 
G | 0.059 0.110 0.010 0.010 0.010 0.010 0.770 0.069 0.130 0.059 0.020 
T | 0.614 0.040 0.010 0.030 0.010 0.010 0.010 0.010 0.010 0.505 0.630 
"
MOT2	YER068W, SIG1, NOT4	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	AGGAAACAAAAA	5.147281e-16	8.05	13.4706	11.5	"Subunit of the CCR4-NOT complex, which has roles in transcription regulation, mRNA degradation, and post-transcriptional modifications; with Ubc4p, ubiquitinates nascent polypeptide-associated complex subunits and histone demethyase Jhd2p
"	No Data	YFR033C, YPL016W, YIL015C-A, YBR129C, YFR006W, YGR247W, YPL083C, YCL065W, YGL207W, YLR224W, YOR043W, YJR094C, YMR023C, YJR148W, YLR099C, YBL031W, YKL213C, YMR110C, YKR024C, YNL065W, YPL221W, YNL289W, YHR072W, YKL031W, YBR054W, YLR297W, YKL161C, YEL003W, YLR016C, YNL202W, YOL101C, YJL202C	XBP1	"A | 0.686 0.375 0.001 0.500 0.873 0.499 0.001 0.624 0.749 0.562 0.997 0.935 
C | 0.001 0.001 0.001 0.250 0.063 0.001 0.997 0.063 0.001 0.312 0.001 0.001 
G | 0.001 0.561 0.997 0.001 0.063 0.001 0.001 0.312 0.001 0.001 0.001 0.001 
T | 0.312 0.063 0.001 0.250 0.001 0.499 0.001 0.001 0.250 0.125 0.001 0.063 
"
MOT3	YMR070W, ROX7	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	AAGGCA	0.0012246256	7.16	8.27403	7.16	"Nuclear transcription factor with two Cys2-His2 zinc fingers; involved in repression of a subset of hypoxic genes by Rox1p, repression of several DAN/TIR genes during aerobic growth, and repression of ergosterol biosynthetic genes
"	YAL004W, YAL059W, YAR047C, YAR073W, YAR075W, YBL020W, YBL021C, YBL022C, YBL029W, YBR012C, YBR012W-A, YBR012W-B, YBR013C, YBR032W, YBR056W, YBR083W, YBR089C-A, YBR090C, YBR097W, YBR105C, YBR106W, YBR119W, YBR210W, YBR275C, YBR294W, YDL044C, YDL063C, YDR022C, YDR023W, YDR065W, YDR278C, YDR339C, YDR340W, YDR420W, YEL055C, YEL069C, YEL070W, YER137C, YFR016C, YGL005C, YGL190C, YHR185C, YIL095W, YIL096C, YIL099W, YIL119C, YIR020C, YJL022W, YJL148W, YJL162C, YJR158W, YJR159W, YKL127W, YKL165C, YKR073C, YLR035C, YML071C, YMR106C, YOL022C, YOL121C, YOR042W, YPL130W, YPR072W	YCL055W, YHL044W, YIL080W, YAL068C, YDL131W, YGL039W, YGL009C, YFR036W, YLR056W, YLR461W, YLR432W, YOR065W, YPL049C, YIL082W, YJR047C, YLR219W, YMR013C, YMR015C, YOR252W, YPL240C, YBR157C, YLR089C, YLR435W, YOR032C, YPL016W, YER011W, YBR092C, YHR081W, YIL176C, YOL136C, YOR287C, YPL283C, YCL017C, YML083C, YML058W-A, YNR028W, YNL307C, YMR070W, YMR102C, YOR318C, YDR281C, YGR211W, YNL300W, YBL093C, YBR012C, YCR048W, YCR050C, YDR044W, YNL024C, YNR071C, YDR196C, YLR068W, YMR173W, YNL279W, YOR043W, YDR077W, YIL121W, YBR196C, YLR037C, YLR437C, YOR010C, YFL020C, YFR015C, YIR042C, YJR151C, YLR348C, YMR145C, YOL150C, YBR293W, YHR215W, YJL217W, YJL223C, YPL092W, YJR150C, YJR121W, YLR349W, YOL143C, YPL137C, YAR071W, YAR075W, YBR290W, YCL027W, YGR221C, YHR216W, YJL216C, YJL218W, YKL150W, YNR001C, YBL099W, YGR294W, YNR073C, YPL189W, YIL114C, YBR177C, YGL029W, YLR042C, YBL100C, YMR056C, YML130C, YNL094W, YNR072W, YNR076W, YOR236W, YEL059C-A, YGR108W, YGR109W-A, YMR173W-A, YOR084W, YOR394W, YGR049W, YJR159W, YOL122C, YBR301W, YLR202C, YMR272C, YDR481C, YFR018C, YGR078C, YIR018W, YJR158W, YLR353W, YOL119C, YOL151W, YDL241W, YDR297W, YER044C, YNR044W, YER168C, YMR037C, YAL060W, YDR268W, YEL065W, YEL038W, YHR136C, YOR095C, YGL255W, YMR038C, YNL104C, YBR210W, YEL068C, YGL032C, YHR137W, YKL096W-A, YLR113W, YLR452C, YBR085W, YCR104W, YNL167C, YBL051C, YIL011W, YKL164C, YML047C, YPL106C, YGR086C, YLL019C, YOL161C, YOL101C, YOR372C, YPR009W, YGL162W, YJL170C, YLR179C, YMR307W	None	"A | 0.329 0.964 0.012 0.012 0.012 0.964 
C | 0.329 0.012 0.012 0.012 0.488 0.012 
G | 0.012 0.012 0.964 0.964 0.012 0.012 
T | 0.329 0.012 0.012 0.012 0.488 0.012 
"
MSN1	YOL116W, PHD2, MSS10, HRB382, FUP1	Fordyce et. al.	http://www.ncbi.nlm.nih.gov/pubmed/20802496	AGGACATT	0.8245926	7.73	8.33131	8.18	"Transcriptional activator involved in regulation of invertase and glucoamylase expression, invasive growth and pseudohyphal differentiation, iron uptake, chromium accumulation, and response to osmotic stress; localizes to the nucleus
"	YBL041W, YBL042C, YBR048W, YDL045W-A, YDL060W, YDL061C, YDR098C, YDR390C, YGL135W, YGL136C, YGL145W, YGL146C, YGR256W, YKL118W, YKR038C, YLR043C, YLR278C, YLR279W, YLR282C, YLR328W, YMR064W, YNL028W, YOR272W, YPR035W	YDR064W, YIL148W, YDL130W, YBL087C, YER144C, YNR062C, YLR061W, YPL016W, YFL013W-A, YJL022W, YLL003W, YPL142C, YFR006W, YFL044C, YHR021C, YMR238W, YDR281C, YKL171W, YML057W, YPL143W, YMR173W, YBR041W, YML124C, YGR161C, YOR386W, YOL116W, YDL230W, YBR101C, YDR107C, YLR345W, YJL190C, YDR048C, YDR386W, YLR262C-A, YLR264W, YLR425W, YEL026W, YGL023C, YGL029W, YLR078C, YLR420W, YML130C, YJR127C, YHR128W, YDR179C, YHR072W-A, YKL030W, YLR388W, YDL242W, YDR323C, YER099C, YER072W, YOL119C, YPR035W, YBL042C, YKL156W, YPL157W, YMR065W, YAL033W, YHR136C, YKL133C, YBR021W, YNL264C, YCL004W, YDL029W, YFL068W, YCL006C, YNL007C	None	"A | 0.360 0.160 0.020 0.960 0.010 0.832 0.120 0.323 
C | 0.120 0.010 0.010 0.020 0.960 0.020 0.100 0.101 
G | 0.220 0.770 0.930 0.010 0.010 0.040 0.010 0.152 
T | 0.300 0.060 0.040 0.010 0.020 0.109 0.770 0.424 
"
MSN2	YMR037C	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	AAGGGGCGG	5.6599e-19	8.47	13.5853	12.24	"Transcriptional activator related to Msn4p; activated in stress conditions, which results in translocation from the cytoplasm to the nucleus; binds DNA at stress response elements of responsive genes, inducing gene expression
"	YBL037W, YBR058C-A, YBR059C, YDL008W, YDL009C, YDL011C, YDR071C, YDR080W, YDR177W, YEL076W-C, YEL077C, YER087C-A, YFR001W, YFR023W, YGL100W, YGL204C, YGL248W, YGR027C, YGR066C, YHR034C, YHR035W, YIL050W, YIL051C, YIL173W, YIL176C, YLR345W, YML022W, YML023C, YML024W, YML025C, YNL025C, YNL335W, YNL336W, YOL089C, YOR148C, YOR236W, YOR238W, YOR241W, YOR242C, YPL195W, YPL198W, YPL200W, YPL201C	YJR054W, YKR039W, YOL047C, YER013W, YMR016C, YHR146W, YOR004W, YOR377W, YDR207C, YPL016W, YCR076C, YDL001W, YDR500C, YGL262W, YIR028W, YOL077C, YPL266W, YAR068W, YJL145W, YMR314W, YMR290C, YNL337W, YBR093C, YBR129C, YDR099W, YMR131C, YMR072W, YOL139C, YNL295W, YDR281C, YLR155C, YLR157C, YMR251W-A, YIL122W, YML119W, YLR323C, YAR015W, YDR200C, YHR156C, YJL059W, YLR102C, YLR412W, YMR173W, YJL122W, YLR099C, YNL248C, YBL001C, YGL111W, YHR214W, YKL178C, YLR158C, YLR160C, YLR192C, YLR164W, YNL315C, YPL122C, YPL156C, YNL152W, YOR294W, YAR071W, YCL025C, YGR251W, YLR159W, YLR232W, YNR077C, YOR209C, YLR449W, YOR051C, YOR021C, YPL066W, YMR173W-A, YOR052C, YFL024C, YJR128W, YMR147W, YNL165W, YOL094C, YOR367W, YDR323C, YDR481C, YOL155C, YGR195W, YLR197W, YNR015W, YPL163C, YFL003C, YHL009W-A, YLR236C, YMR037C, YIL169C, YBR244W, YDL085W, YHR135C, YJL076W, YLR049C, YNL234W, YBL047C, YIL011W	ACA1, GSM1, MIG1, MIG3, PHD1, RPH1, RSF2, SKN7, SUT1, YDR026C	"A | 0.683 0.919 0.001 0.001 0.026 0.001 0.001 0.001 0.211 
C | 0.184 0.001 0.001 0.001 0.001 0.001 0.525 0.132 0.001 
G | 0.001 0.079 0.972 0.997 0.789 0.997 0.237 0.762 0.683 
T | 0.132 0.001 0.026 0.001 0.184 0.001 0.237 0.105 0.105 
"
MSN4	YKL062W	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	AAGGGGA	4.7522575e-07	8.57	11.0308	9.15	"Transcriptional activator related to Msn2p; activated in stress conditions, which results in translocation from the cytoplasm to the nucleus; binds DNA at stress response elements of responsive genes, inducing gene expression
"	YAL003W, YAL005C, YBL027W, YBL028C, YBL069W, YBL071C, YBL087C, YBL108W, YBR057C, YBR072W, YBR073W, YBR074W, YBR086C, YBR087W, YBR089W, YDR010C, YDR011W, YDR072C, YDR073W, YDR075W, YDR085C, YDR117C, YDR118W, YDR169C, YDR227W, YDR228C, YDR229W, YDR372C, YDR373W, YDR543C, YDR544C, YDR545W, YEL020W-A, YEL021W, YEL051W, YEL073C, YEL076W-C, YEL077C, YER007C-A, YER022W, YER103W, YER164W, YER166W, YER189W, YER190W, YFL063W, YFL064C, YFL065C, YFR001W, YFR031C-A, YGL108C, YGR027C, YGR032W, YGR142W, YGR210C, YGR211W, YGR251W, YGR254W, YGR296W, YHL048W, YHR033W, YHR034C, YHR035W, YHR079C, YHR087W, YHR091C, YIL050W, YIL051C, YIL120W, YIL122W, YIL128W, YIL129C, YIL173W, YIL174W, YIL175W, YIL176C, YIL177C, YJL188C, YJL225C, YJR123W, YKL004W, YKL005C, YKL006C-A, YKL006W, YKL061W, YLL026W, YLL063C, YLR194C, YLR199C, YLR200W, YLR254C, YLR255C, YLR256W, YLR256W-A, YLR390W-A, YLR439W, YLR462W, YLR463C, YLR464W, YLR465C, YLR466W, YLR467W, YML057W, YML063W, YML064C, YML111W, YML125C, YML131W, YML132W, YMR026C, YMR027W, YMR119W, YMR119W-A, YMR144W, YMR165C, YMR251W-A, YMR252C, YMR254C, YMR255W, YNL025C, YNL077W, YNL335W, YNL336W, YNL337W, YNL338W, YNL339C, YOR134W, YOR236W, YOR275C, YOR276W, YPL150W, YPL151C, YPL152W, YPL153C, YPL198W, YPL283C, YPR102C, YPR103W, YPR104C, YPR107C, YPR108W, YPR154W, YPR184W, YPR202W, YPR203W	YPL240C, YJR114W, YLL030C, YOR289W, YBR093C, YDR281C, YCR050C, YIL156W, YML004C, YPR124W, YJR148W, YFL051C, YOR298W, YHR039C, YMR110C, YOR298C-A, YBR296C, YNR032W, YIL160C, YGR109W-B, YKL062W, YKR086W, YOR080W, YCR095C, YML098W, YER164W, YKR035W-A, YER017C, YML015C, YMR186W, YOR027W, YPL041C, YGL255W, YDR492W, YHR105W, YIR020W-B, YJL045W, YDR306C, YGL095C, YNL007C, YPR173C	ACA1, GSM1, MIG1, MIG3, PHD1, RPH1, RSC3, RSF2, SKN7, STP1, SUT1, UGA3, YER184C	"A | 0.488 0.964 0.012 0.012 0.012 0.012 0.250 
C | 0.488 0.012 0.012 0.012 0.012 0.012 0.250 
G | 0.012 0.012 0.964 0.964 0.964 0.964 0.250 
T | 0.012 0.012 0.012 0.012 0.012 0.012 0.250 
"
NDD1	YOR372C	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	TTTCCCAATTGGG	1.672207e-21	8.75	11.3262	12.25	"Transcriptional activator essential for nuclear division; localized to the nucleus; essential component of the mechanism that activates the expression of a set of late-S-phase-specific genes
"	YAL062W, YAR009C, YAR018C, YBL027W, YBL028C, YBR037C, YBR038W, YBR044C, YBR050C, YBR067C, YBR077C, YBR078W, YBR092C, YBR138C, YBR139W, YBR158W, YBR190W, YBR191W, YBR230C, YCR024C, YCR024C-A, YCR064C, YCR065W, YDL022W, YDL134C, YDR033W, YDR146C, YDR147W, YDR148C, YDR150W, YDR154C, YDR155C, YDR156W, YDR157W, YDR158W, YDR187C, YDR189W, YDR307W, YDR324C, YDR325W, YDR451C, YDR452W, YDR453C, YDR526C, YEL007W, YEL076W-C, YEL077C, YER008C, YER009W, YER078C, YER079W, YER087C-A, YER136W, YER177W, YER189W, YER190W, YFL021W, YFL022C, YFR017C, YGL007W, YGL008C, YGL021W, YGL114W, YGL116W, YGL135W, YGL136C, YGR013W, YGR014W, YGR060W, YGR085C, YGR092W, YGR109C, YGR109W-A, YGR109W-B, YGR143W, YGR190C, YGR192C, YGR229C, YGR230W, YGR256W, YGR279C, YHL028W, YHL029C, YHR048W, YHR098C, YHR099W, YHR151C, YHR152W, YHR193C, YHR194W, YIL123W, YIL158W, YIL169C, YJL005W, YJL048C, YJL051W, YJL079C, YJL080C, YJL098W, YJL100W, YJL101C, YJL148W, YJL158C, YJL161W, YJR044C, YJR076C, YJR091C, YJR092W, YJR127C, YJR148W, YKL038W, YKL096W-A, YKL097C, YKL150W, YKL151C, YKR040C, YKR042W, YKR043C, YKR044W, YLR035C-A, YLR084C, YLR105C, YLR131C, YLR189C, YLR190W, YLR300W, YLR344W, YLR367W, YLR368W, YLR378C, YLR380W, YLR439W, YML006C, YML028W, YML050W, YML052W, YML053C, YML100W, YML101C, YML102C-A, YML123C, YML125C, YML131W, YMR001C, YMR002W, YMR013C, YMR014W, YMR119W, YMR119W-A, YMR135C, YMR136W, YMR144W, YMR165C, YMR199W, YNL034W, YNL056W, YNL058C, YNL132W, YNL134C, YNL145W, YNL241C, YNL288W, YNL289W, YNR018W, YOR023C, YOR024W, YOR025W, YOR138C, YOR140W, YOR236W, YOR246C, YOR247W, YOR248W, YOR315W, YOR316C, YOR369C, YPL050C, YPL081W, YPL082C, YPL083C, YPL141C, YPL143W, YPL198W, YPR008W, YPR072W, YPR119W, YPR148C, YPR149W, YPR151C, YPR160W	No Data	FKH1, FKH2, MBP1, MCM1, SWI6	"A | 0.142 0.187 0.211 0.020 0.006 0.242 0.682 0.862 0.435 0.161 0.315 0.041 0.019 
C | 0.116 0.082 0.156 0.911 0.967 0.342 0.089 0.005 0.013 0.219 0.136 0.003 0.024 
G | 0.079 0.156 0.130 0.046 0.007 0.144 0.196 0.008 0.005 0.204 0.354 0.950 0.937 
T | 0.663 0.575 0.503 0.023 0.020 0.271 0.033 0.125 0.547 0.415 0.195 0.006 0.020 
"
NDT80	YHR124W	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	GCCACAAAAAC	0.6800761	7.81	12.7218	12.5	"Meiosis-specific transcription factor required for exit from pachytene and for full meiotic recombination; activates middle sporulation genes; competes with Sum1p for binding to promoters containing middle sporulation elements (MSE)
"	YAL016W, YBR001C, YBR063C, YBR127C, YCR037C, YCR081W, YDL034W, YDL036C, YDL044C, YDL201W, YDR084C, YDR142C, YDR144C, YDR145W, YDR256C, YDR286C, YDR287W, YDR337W, YER013W, YER015W, YER041W, YGL143C, YGL149W, YGR004W, YGR093W, YGR166W, YGR188C, YGR218W, YGR271W, YHL017W, YHL022C, YHR085W, YHR104W, YHR117W, YHR120W, YIL068C, YJL175W, YJL203W, YJL204C, YJR012C, YJR013W, YJR033C, YJR034W, YJR041C, YJR042W, YJR069C, YJR071W, YKL172W, YLL032C, YLR082C, YLR118C, YLR119W, YLR199C, YLR200W, YLR239C, YLR240W, YLR277C, YLR319C, YLR320W, YLR426W, YML108W, YMR004W, YMR134W, YMR257C, YMR258C, YMR267W, YNL168C, YNL225C, YNL258C, YNL290W, YNL291C, YOL049W, YOL050C, YOL159C, YOR059C, YOR093C, YOR094W, YOR249C, YPL010W, YPL011C, YPL043W, YPL150W, YPL151C, YPL188W, YPL202C, YPL215W	YDR004W, YER145C, YJR016C, YKR043C, YLR248W, YMR010W, YMR045C, YNL085W, YOL013W-A, YOR192C-A, YPL207W, YBR187W, YBR158W, YBR189W, YGL039W, YGR124W, YJL083W, YLR056W, YLR432W, YOR067C, YOR039W, YOR377W, YPR139C, YDR035W, YGL235W, YMR015C, YOR254C, YOR192C-B, YDR039C, YML104C, YGR151C, YPL016W, YBR068C, YFL045C, YHR051W, YJR145C, YLR340W, YLR372W, YOL104C, YOL077C, YOL142W, YPL266W, YPR016C, YDL158C, YDR280W, YDR341C, YGL135W, YGR214W, YIL018W, YJL177W, YLR186W, YLR188W, YML056C, YNL301C, YNR028W, YOR097C, YBR067C, YCR107W, YDL032W, YDL004W, YMR070W, YNL112W, YOL105C, YOL079W, YER029C, YJL210W, YKL199C, YML022W, YIL126W, YGR286C, YIL154C, YJR026W, YJR028W, YLR227W-A, YMR050C, YML125C, YNL087W, YNL061W, YOL021C, YOR199W, YOR231W, YAR010C, YGR160W, YGR103W, YHR156C, YJL059W, YKL056C, YNL284C-A, YOR043W, YLR256W-A, YMR049C, YNL054W-A, YOR262W, YPL244C, YPL183C, YAL014C, YGR159C, YHR124W, YDR537C, YLR344W, YLR350W, YNL123W, YNL187W, YNL313C, YPL092W, YLR343W, YMR079W, YJL156C, YDR022C, YHL026C, YKR087C, YLR230W, YLR293C, YNL065W, YNL069C, YOL002C, YOR207C, YPL254W, YPL257W-A, YDR345C, YGL055W, YER187W, YGR291C, YJR095W, YKR027W, YOL059W, YOL061W, YPL226W, YDL079C, YDR233C, YDR261W-B, YEL062W, YFR051C, YLR413W, YOL124C, YOL126C, YOR335C, YJR007W, YLR172C, YMR274C, YPL126W, YBR143C, YIR012W, YNL132W, YOR360C, YPR033C, YCL033C, YDL237W, YMR006C, YOR251C, YDR212W, YDR274C, YGR176W, YHR170W, YLR048W, YMR212C, YOR095C, YOR246C, YML018C, YMR217W, YPL012W, YDR186C, YHR044C, YLR398C, YOL103W-A, YDR331W, YDR365W-A, YLR180W, YML106W, YNL327W, YNR051C, YLR359W, YOL097C, YOL101C, YOL103W, YOR306C, YOR340C, YOR343C-A, YPR069C, YPR009W, YPR041W, YML075C	None	"A | 0.188 0.444 0.010 0.931 0.020 0.960 0.960 0.940 0.717 0.500 0.120 
C | 0.020 0.485 0.949 0.010 0.960 0.010 0.010 0.010 0.020 0.180 0.630 
G | 0.673 0.040 0.010 0.050 0.010 0.010 0.020 0.010 0.242 0.080 0.100 
T | 0.119 0.030 0.030 0.010 0.010 0.020 0.010 0.040 0.020 0.240 0.150 
"
NHP10	YDL002C, HMO2	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	GCCGGGGA		8.84	13.3372	11.77	"Protein related to mammalian high mobility group proteins; preferentially binds DNA ends, protecting them from exonucleatic cleavage; likely component of the chromatin-remodeling complex INO80 complex; proposed to be involved in DNA repair
"	No Data	No Data	GIS1, HMS1, LYS14, RGM1, RSC3, STP1, STP2, SUT1, USV1	"A | 0.200 0.080 0.010 0.010 0.010 0.010 0.010 0.663 
C | 0.100 0.760 0.970 0.010 0.010 0.010 0.010 0.079 
G | 0.600 0.080 0.010 0.970 0.970 0.970 0.970 0.178 
T | 0.100 0.080 0.010 0.010 0.010 0.010 0.010 0.079 
"
NHP6A	YPR052C	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	CTATATATAA		6.26	6.62126	8.36	"High-mobility group (HMG) protein that binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Bp; homologous to mammalian HMGB1 and HMGB2
"	No Data	No Data	STB5	"A | 0.100 0.340 0.495 0.111 0.900 0.130 0.850 0.060 0.743 0.650 
C | 0.520 0.130 0.253 0.020 0.010 0.030 0.020 0.040 0.020 0.030 
G | 0.050 0.070 0.061 0.010 0.030 0.010 0.040 0.030 0.020 0.150 
T | 0.330 0.460 0.192 0.859 0.060 0.830 0.090 0.870 0.218 0.170 
"
NHP6B	YBR089C-A, YBR090C-A	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	TATTTATATATAATA		6.73	4.89739	8.92	"High-mobility group (HMG) protein that binds to and remodels nucleosomes; involved in recruiting FACT and other chromatin remodelling complexes to the chromosomes; functionally redundant with Nhp6Ap; homologous to mammalian HMGB1 and HMGB2
"	No Data	No Data	STB5	"A | 0.139 0.376 0.198 0.152 0.390 0.580 0.168 0.810 0.090 0.743 0.280 0.510 0.460 0.370 0.470 
C | 0.109 0.208 0.317 0.323 0.070 0.090 0.069 0.030 0.070 0.020 0.050 0.030 0.100 0.110 0.080 
G | 0.109 0.079 0.109 0.141 0.030 0.050 0.020 0.070 0.030 0.069 0.090 0.070 0.120 0.110 0.340 
T | 0.644 0.337 0.376 0.384 0.510 0.280 0.743 0.090 0.810 0.168 0.580 0.390 0.320 0.410 0.110 
"
NRG1	YDR043C	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	GGACCCTG	4.548687e-47	8.03	12.5488	11.14	"Transcriptional repressor that recruits the Cyc8p-Tup1p complex to promoters; mediates glucose repression and negatively regulates a variety of processes including filamentous growth and alkaline pH response
"	YAL017W, YAL018C, YAL022C, YAL064W, YBL029W, YBL043W, YBR040W, YBR099C, YBR157C, YDL037C, YDL122W, YDL245C, YDL246C, YDR040C, YDR041W, YDR042C, YDR043C, YDR052C, YDR077W, YDR133C, YDR134C, YDR259C, YDR343C, YDR434W, YDR441C, YDR442W, YDR535C, YDR536W, YEL007W, YEL040W, YEL069C, YEL070W, YER001W, YER011W, YER018C, YER019W, YER033C, YER034W, YER044C, YER045C, YFL059W, YFL060C, YFR017C, YGL158W, YGL227W, YGR050C, YGR218W, YGR249W, YGR277C, YGR278W, YHL041W, YHR012W, YHR033W, YHR049W, YHR138C, YHR156C, YHR157W, YHR193C, YHR194W, YHR195W, YIL019W, YIL020C, YIL040W, YIL097W, YIL098C, YIL099W, YIL118W, YIL119C, YIL122W, YIL170W, YIL171W, YIL172C, YIR013C, YIR014W, YIR020C, YJL105W, YJL216C, YJL219W, YJL221C, YJR094C, YJR102C, YJR103W, YJR158W, YJR159W, YKL044W, YKL177W, YKL179C, YKR102W, YLR012C, YLR013W, YLR023C, YLR112W, YLR221C, YLR261C, YLR262C, YLR286C, YLR413W, YMR017W, YMR056C, YMR135C, YMR135W-A, YMR136W, YMR319C, YNL111C, YNL333W, YNL334C, YNR050C, YNR060W, YNR070W, YOL028C, YOL156W, YOL157C, YOL160W, YOR010C, YOR028C, YOR029W, YOR032C, YOR049C, YOR102W, YOR138C, YOR140W, YOR151C, YOR273C, YOR274W, YOR280C, YOR282W, YOR315W, YPL018W, YPL019C, YPL021W, YPL034W, YPL230W, YPL251W, YPL253C, YPR009W, YPR013C	YER013W, YHR146W, YGL166W, YNR060W, YOR220W, YHR179W, YPL016W, YBR098W, YMR316W, YBR093C, YBR129C, YER029C, YKL206C, YLR119W, YOR130C, YGR134W, YLR438C-A, YGL212W, YBR166C, YLR099C, YHR215W, YLR194C, YMR291W, YMR294W-A, YPL156C, YFL014W, YAR071W, YCL025C, YNL065W, YNL036W, YLR416C, YNL289W, YGR137W, YOR052C, YDR322W, YJL196C, YMR038C, YBR244W, YDR333C	GIS1, MIG1, MIG3, RDR1, RGM1, RSC3, RSF2, USV1	"A | 0.186 0.048 0.861 0.012 0.009 0.009 0.011 0.083 
C | 0.018 0.009 0.014 0.955 0.972 0.971 0.057 0.033 
G | 0.785 0.933 0.026 0.010 0.009 0.010 0.045 0.470 
T | 0.010 0.009 0.100 0.024 0.009 0.009 0.888 0.413 
"
NRG2	YBR066C	Fordyce et. al.	http://www.ncbi.nlm.nih.gov/pubmed/20802496	GGTCCAAG		7.3	9.92848	9.72	"Transcriptional repressor that mediates glucose repression and negatively regulates filamentous growth; has similarity to Nrg1p
"	No Data	No Data	None	"A | 0.010 0.010 0.200 0.050 0.010 0.390 0.810 0.010 
C | 0.010 0.010 0.060 0.700 0.465 0.370 0.030 0.010 
G | 0.970 0.970 0.080 0.010 0.267 0.070 0.150 0.970 
T | 0.010 0.010 0.660 0.240 0.257 0.170 0.010 0.010 
"
OAF1	YAL051W, YAF1	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	TAAATCCGA	0.003055524	6.99	10.0198	9.21	"Oleate-activated transcription factor, acts alone and as a heterodimer with Pip2p; activates genes involved in beta-oxidation of fatty acids and peroxisome organization and biogenesis
"	YAL016W, YAL034W-A, YAL035C-A, YAL035W, YAL036C, YAL047C, YAR066W, YBL032W, YBL033C, YBL054W, YBL055C, YBL089W, YBR019C, YBR020W, YBR048W, YBR127C, YBR150C, YBR151W, YBR187W, YBR214W, YBR230C, YBR240C, YCR020C-A, YCR081W, YCR106W, YDL024C, YDL058W, YDL059C, YDL086W, YDL087C, YDL210W, YDR048C, YDR207C, YDR208W, YDR256C, YDR312W, YDR476C, YDR477W, YDR488C, YDR489W, YEL011W, YEL065W, YEL067C, YER015W, YER134C, YFR015C, YFR016C, YGL143C, YGL172W, YGL173C, YGL180W, YGL201C, YGL235W, YGL237C, YGL260W, YGL261C, YGR067C, YGR069W, YGR109C, YGR109W-A, YGR109W-B, YGR188C, YHL017W, YHL021C, YHL050C, YHR041C, YHR042W, YHR117W, YHR212C, YHR214W, YHR214W-A, YIL054W, YIL055C, YIL069C, YIL096C, YIL100W, YIL101C, YIL113W, YIL114C, YIL120W, YIL125W, YIR040C, YIR041W, YJL079C, YJL222W, YJR011C, YJR016C, YJR018W, YJR045C, YJR046W, YJR065C, YJR066W, YJR069C, YJR071W, YJR104C, YJR105W, YJR143C, YJR144W, YKL062W, YKL093W, YKL146W, YKL148C, YKL211C, YKL223W, YKL224C, YKR096W, YLR011W, YLR071C, YLR072W, YLR078C, YLR079W, YLR089C, YLR090W, YLR120C, YLR174W, YLR176C, YLR177W, YLR186W, YLR239C, YLR240W, YLR245C, YLR246W, YLR251W, YLR252W, YLR373C, YLR375W, YLR428C, YLR430W, YLR439W, YML006C, YML072C, YML109W, YML110C, YML125C, YMR043W, YMR062C, YMR063W, YMR107W, YMR165C, YMR324C, YMR325W, YNL094W, YNL095C, YNL113W, YNL115C, YNL236W, YNL299W, YNL321W, YNL322C, YOL083W, YOR042W, YOR049C, YOR301W, YOR323C, YOR325W, YPL016W, YPL017C, YPL059W, YPL060C-A, YPL262W, YPL263C, YPR038W, YPR039W, YPR040W, YPR098C, YPR100W, YPR148C, YPR149W, YPR204W	YGR278W, YHL014C, YML112W, YML114C, YHR146W, YDR207C, YCR009C, YMR042W, YOR220W, YPL177C, YGR151C, YDL188C, YDL220C, YMR314W, YMR316W, YBR093C, YBR129C, YFR006W, YJR113C, YJR144W, YMR072W, YMR102C, YMR135C, YNL180C, YBL058W, YKL142W, YKL206C, YLR119W, YLR183C, YNR027W, YNR029C, YBR010W, YGR290W, YML121W, YOR229W, YGR132C, YLR438C-A, YOR043W, YBR009C, YLR225C, YLR285W, YMR017W, YMR023C, YOR202W, YBR166C, YEL051W, YFR041C, YGR161C, YKL052C, YLR099C, YLR101C, YMR197C, YMR171C, YMR199W, YOR074C, YBL003C, YGR220C, YHR215W, YMR291W, YMR294W-A, YPL118W, YGR012W, YOL111C, YOR354C, YAR071W, YGR219W, YGR253C, YKL150W, YLR195C, YML094W, YMR321C, YMR295C, YNL310C, YOL002C, YEL058W, YGR164W, YMR178W, YNL289W, YPL066W, YDR019C, YLR294C, YNL031C, YNL096C, YNL098C, YNL100W, YOL032W, YDR209C, YGR135W, YGR137W, YGR167W, YNL290W, YOR052C, YJL167W, YMR272C, YLR351C, YCL031C, YJL196C, YPL129W, YPL163C, YOR059C, YHR013C, YIL139C, YLR269C, YOL005C, YOL038W, YOR278W, YBR244W, YHR135C, YJL076W, YLR079W, YLR049C, YNL264C, YHR046C, YPR040W, YIL044C, YGR022C, YKL007W, YOL101C, YIL041W	GIS1, PDR1, PDR8, RDS1, RGT1, STP1, SUT1, USV1, YPR196W	"A | 0.120 0.859 0.480 0.440 0.010 0.010 0.010 0.010 0.650 
C | 0.030 0.010 0.020 0.200 0.182 0.970 0.950 0.010 0.020 
G | 0.030 0.010 0.050 0.170 0.081 0.010 0.030 0.970 0.260 
T | 0.820 0.121 0.450 0.190 0.727 0.010 0.010 0.010 0.070 
"
OPI1	YHL020C	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	GGTTCGAATC	0.2521179	7.14	9.94926	10.75	"Transcriptional regulator of a variety of genes; phosphorylation by protein kinase A stimulates Opi1p function in negative regulation of phospholipid biosynthetic genes; involved in telomere maintenance
"	YAR009C, YAR050W, YBR029C, YBR030W, YDR146C, YDR147W, YDR194C, YDR195W, YDR497C, YFR029W, YFR036W, YGR256W, YHR005C-A, YIL102C, YJL148W, YJL152W, YJL153C, YJL191W, YJL192C, YJR100C, YKL182W, YLL004W, YLL005C, YLR011W, YNL129W, YNL130C, YOR236W, YPL198W, YPL231W	YGL230C, YNL052W, YJL115W, YKL043W, YOR065W, YPL019C, YPL053C, YBR029C, YIL143C, YDL127W, YFR033C, YGR151C, YGR157W, YJL048C, YLR460C, YPL016W, YPL052W, YPR140W, YHR053C, YHR055C, YOL108C, YER026C, YGL077C, YML027W, YOR097C, YOR129C, YBR129C, YDR497C, YGR004W, YLL061W, YOL107W, YDR275W, YJL210W, YKL142W, YIL124W, YNL089C, YOR229W, YHR123W, YMR173W, YHR004C, YLR253W, YNL090W, YOR230W, YOR264W, YGR131W, YLR099C, YMR199W, YOR074C, YPL026C, YDR502C, YIR042C, YLR005W, YLR380W, YNR016C, YJL153C, YJL185C, YKL182W, YLR132C, YNR035C, YPL156C, YGR040W, YMR144W, YOR298C-A, YOR328W, YLR191W, YLR133W, YMR030W, YNL065W, YOL002C, YBR177C, YGL055W, YNL257C, YNL289W, YKR056W, YNL098C, YOL032W, YPL188W, YMR173W-A, YNL256W, YPL061W, YHR067W, YKL001C, YLR352W, YNL191W, YOL154W, YER043C, YGR260W, YGR234W, YIL034C, YJL167W, YLR136C, YLR168C, YLR172C, YMR300C, YMR272C, YDR481C, YKL027W, YJR133W, YER044C, YGR259C, YJL196C, YER091C, YHR018C, YJR104C, YNL044W, YPL231W, YDR274C, YGR176W, YHR200W, YJL079C, YJR073C, YLR241W, YMR038C, YNL043C, YBR178W, YBR244W, YGR149W, YGR177C, YJL142C, YLR049C, YPL042C, YDR124W, YFR030W, YNL141W, YKR004C, YDR123C, YNL170W, YOL101C, YOL103W, YOR306C, YPR069C, YLR173W, YNR019W	STP3	"A | 0.188 0.050 0.139 0.090 0.040 0.426 0.910 0.440 0.010 0.100 
C | 0.238 0.010 0.010 0.010 0.900 0.010 0.070 0.160 0.317 0.770 
G | 0.545 0.802 0.089 0.010 0.050 0.554 0.010 0.170 0.020 0.100 
T | 0.030 0.139 0.762 0.890 0.010 0.010 0.010 0.230 0.653 0.030 
"
ORC1	YML065W	Pachkov et al	http://www.ncbi.nlm.nih.gov/pubmed/17130146	TTTTTTTATGTTTAGTT		11.93	16.3308	15.9	"Largest subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; exhibits ATPase activity
"	No Data	No Data	None	"A | 0.303 0.212 0.091 0.212 0.030 0.030 0.030 0.877 0.091 0.333 0.001 0.091 0.001 0.544 0.001 0.001 0.061 
C | 0.152 0.001 0.001 0.001 0.001 0.001 0.061 0.001 0.121 0.030 0.030 0.030 0.001 0.001 0.152 0.001 0.121 
G | 0.001 0.091 0.001 0.091 0.001 0.001 0.001 0.001 0.001 0.424 0.001 0.001 0.001 0.001 0.544 0.212 0.001 
T | 0.544 0.696 0.907 0.696 0.968 0.968 0.908 0.121 0.787 0.212 0.968 0.878 0.997 0.454 0.303 0.786 0.817 
"
PDR1	YGL013C, TPE3, TPE1, TIL1, SMR2, NRA2, CYH3, BOR2, ANT1, AMY1	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	CCGCCGAATAA	9.340122e-15	10.64	12.7415	12.86	"Zinc cluster protein that is a master regulator involved in recruiting other zinc cluster proteins to pleiotropic drug response elements (PDREs) to fine tune the regulation of multidrug resistance genes
"	YAL022C, YAR002W, YBL001C, YBL087C, YBL109W, YBL111C, YBL112C, YBL113C, YBR040W, YBR057C, YBR159W, YBR190W, YBR191W, YCL065W, YCL066W, YCL067C, YCL068C, YCL074W, YCR105W, YDL075W, YDL076C, YDL082W, YDL083C, YDL099W, YDL100C, YDL114W, YDL115C, YDL130W, YDL147W, YDL148C, YDL223C, YDR042C, YDR064W, YDR235W, YDR282C, YDR342C, YDR366C, YDR368W, YDR418W, YDR470C, YDR471W, YDR543C, YDR544C, YDR545W, YEL054C, YER056C-A, YER074W, YER116C, YER117W, YFL034W, YFL063W, YFL064C, YFL065C, YFR017C, YFR031C-A, YFR039C, YFR040W, YGL006W, YGL103W, YGL104C, YGL115W, YGL135W, YGL136C, YGL189C, YGR085C, YGR117C, YGR118W, YGR296W, YHL049C, YHR021C, YHR021W-A, YHR087W, YHR091C, YHR138C, YHR141C, YHR142W, YHR193C, YHR194W, YHR197W, YIL018W, YIL128W, YIL129C, YIL133C, YIL148W, YIL149C, YIL152W, YIL174W, YIL175W, YIL177C, YJL042W, YJL134W, YJL135W, YJL136C, YJL188C, YJL189W, YJL190C, YJL191W, YJL192C, YJL225C, YJR044C, YLL065W, YLR047C, YLR048W, YLR057W, YLR207W, YLR354C, YLR406C, YLR407W, YLR462W, YLR463C, YLR464W, YLR465C, YLR466W, YLR467W, YML111W, YML132W, YML133C, YMR015C, YMR135W-A, YMR165C, YMR240C, YMR241W, YNL069C, YNL236W, YNL302C, YNL336W, YNL337W, YNL338W, YNL339C, YOL077W-A, YOL078W, YOL080C, YOL121C, YOR138C, YOR140W, YOR236W, YOR268C, YOR269W, YOR273C, YOR274W, YOR307C, YOR318C, YOR319W, YOR323C, YOR325W, YOR369C, YOR381W, YPL018W, YPL019C, YPL059W, YPL060C-A, YPL090C, YPL143W, YPL251W, YPL253C, YPL283C, YPR080W, YPR102C, YPR103W, YPR170C, YPR171W, YPR202W, YPR203W	YJR052W, YLR214W, YBR223C, YDL094C, YGL013C, YOR377W, YKR072C, YNL051W, YBR157C, YLR399C, YPL016W, YGR035C, YBL053W, YBL057C, YDL190C, YDL224C, YER026C, YJL211C, YOR131C, YGR060W, YGR032W, YDL191W, YDL223C, YGL140C, YMR251W-A, YOR128C, YOR132W, YPR198W, YPR188C, YER149C, YER121W, YER151C, YER182W, YAL044C, YER007W, YBL104C, YKL219W, YDL101C, YDL132W, YDL133W, YDL137W, YDR259C, YEL023C, YER007C-A, YHR151C, YHR153C, YJL088W, YJL058C, YJL090C, YJL060W, YBL052C, YCL030C, YJL191W, YML091C, YPL154C, YDR133C, YIR037W, YNL231C, YMR319C, YPR199C, YPR171W, YDR448W, YCR022C, YGL247W, YGR108W, YKL120W, YOL158C, YLR136C, YML074C, YPR168W, YHR016C, YNL103W, YDL246C, YDL154W, YEL065W, YHR136C, YPR159W, YEL006W, YDR391C, YDR423C, YER134C, YJR043C, YKR068C, YMR034C, YDL119C, YGL068W, YKL071W, YLR081W, YPL075W, YPR103W, YPR162C, YER049W, YJR010W, YLR144C, YML081W, YOR155C, YCR100C, YFR031C, YLR016C, YLL025W, YNL134C, YNL198C, YOL097C, YOR370C, YCL010C, YDL181W, YGL130W, YJL200C, YJL202C, YJL204C, YJL174W, YKL193C, YMR277W, YMR309C, YNR052C, YOR120W, YOR156C, YOR188W, YPR190C, YPR173C	ABF1, CAT8, DAL82, MIG1, MIG3, OAF1, RSC3, RSC30, RSF2, SUT1, YRM1	"A | 0.135 0.052 0.020 0.003 0.003 0.180 0.810 0.918 0.434 0.671 0.643 
C | 0.699 0.639 0.002 0.930 0.977 0.002 0.002 0.048 0.002 0.110 0.075 
G | 0.063 0.167 0.898 0.064 0.002 0.698 0.185 0.031 0.031 0.216 0.090 
T | 0.103 0.142 0.080 0.003 0.018 0.120 0.003 0.003 0.533 0.003 0.192 
"
PDR3	YBL005W, TPE2, AMY2	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	TCTGCGG	0.01537088	7.32	7.57151	8.63	"Transcriptional activator of the pleiotropic drug resistance network, regulates expression of ATP-binding cassette (ABC) transporters through binding to cis-acting sites known as PDREs (PDR responsive elements)
"	YAR050W, YBL005W, YBL006C, YBL059W, YBR080C, YBR127C, YBR214W, YCR020C-A, YCR032W, YDL027C, YDL091C, YDR048C, YDR091C, YDR092W, YDR142C, YDR289C, YDR319C, YDR415C, YDR416W, YDR446W, YDR468C, YDR469W, YGL004C, YGL059W, YGL066W, YGL113W, YGR110W, YGR166W, YGR218W, YHR064C, YIL068C, YJL095W, YJR007W, YJR054W, YJR069C, YJR071W, YJR096W, YJR132W, YKL077W, YKL169C, YKR105C, YKR106W, YLR239C, YLR240W, YLR343W, YLR456W, YML093W, YML095C-A, YML096W, YML097C, YMR094W, YMR126C, YMR193W, YMR257C, YMR258C, YMR290W-A, YNL168C, YNL258C, YNR007C, YNR008W, YOL003C, YOL083W, YOR148C, YOR205C, YOR206W, YOR233W, YOR280C, YOR282W, YOR287C, YOR322C, YOR339C, YPR087W	YJR054W, YML117W-A, YDL100C, YGL039W, YGL009C, YJL053W, YLR090W, YMR220W, YPL053C, YDR207C, YNL051W, YMR198W, YHR145C, YPL016W, YDR130C, YGL262W, YMR134W, YOL104C, YNR065C, YGL075C, YDR099W, YLR341W, YOR320C, YMR020W, YOR075W, YGL239C, YGL180W, YOR230W, YJR148W, YEL051W, YGL048C, YGR161C-D, YLR035C-A, YLR099C, YLR101C, YOR074C, YOR046C, YPL054W, YCR086W, YHR093W, YJR155W, YLL038C, YLR348C, YMR145C, YNR002C, YLR345W, YLR349W, YCL025C, YJL156C, YMR321C, YBR018C, YDR414C, YJR100C, YJR038C, YOL031C, YOR209C, YPL191C, YGL027C, YBR049C, YBR051W, YCL066W, YGL188C, YIL097W, YIL099W, YNL100W, YKL120W, YBR146W, YDR110W, YDR484W, YKL001C, YNL191W, YBL006C, YER100W, YJR006W, YJR107W, YHR135C, YEL010W, YLL025W, YCL006C	CIN5, GSM1, MIG1, PDR8, RGT1, SUT1, YER184C	"A | 0.187 0.126 0.196 0.060 0.034 0.024 0.036 
C | 0.087 0.791 0.280 0.053 0.842 0.118 0.040 
G | 0.098 0.060 0.072 0.818 0.062 0.732 0.884 
T | 0.628 0.023 0.451 0.069 0.062 0.126 0.040 
"
PDR8	YLR266C	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	CGGAGAT	0.1343003	4.97	11.5723	9.64	"Transcription factor; targets include ATP-binding cassette (ABC) transporters, major facilitator superfamily transporters, and other genes involved in the pleiotropic drug resistance (PDR) phenomenon
"	No Data	YGL009C, YBR093C, YBR067C, YFR006W, YNL180C, YIL121W, YER001W, YBR296C, YKR024C, YGL023C, YKL120W, YLR266C, YLR265C, YLR269C	CIN5, GSM1, MIG1, MIG3, OAF1, PDR3, STB5, STP1, SUT1, YER184C, YPR196W	"A | 0.010 0.010 0.010 0.970 0.080 0.970 0.130 
C | 0.970 0.010 0.010 0.010 0.080 0.010 0.060 
G | 0.010 0.970 0.970 0.010 0.830 0.010 0.060 
T | 0.010 0.010 0.010 0.010 0.010 0.010 0.750 
"
PHD1	YKL043W	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	CATGCATC	1.0730804e-22	5.83	8.85377	8.73	"Transcriptional activator that enhances pseudohyphal growth; regulates expression of FLO11, an adhesin required for pseudohyphal filament formation; similar to StuA, an A. nidulans developmental regulator; potential Cdc28p substrate
"	YAL002W, YAL063C, YAL064W, YAR050W, YBL025W, YBL029W, YBL030C, YBL069W, YBL071C, YBR069C, YBR080C, YBR157C, YBR158W, YBR159W, YBR162C, YBR162W-A, YCL024W, YCL025C, YCL045C, YCR064C, YCR065W, YCR098C, YCR099C, YCR100C, YDL016C, YDL034W, YDL036C, YDL037C, YDL047W, YDL092W, YDL094C, YDL095W, YDL097C, YDL214C, YDL245C, YDR010C, YDR011W, YDR210W-D, YDR261C, YDR309C, YDR343C, YDR441C, YDR442W, YDR451C, YDR452W, YDR513W, YEL007W, YEL038W, YEL039C, YEL040W, YEL066W, YEL068C, YEL069C, YEL070W, YEL073C, YEL074W, YEL075C, YEL076C, YEL076C-A, YEL076W-C, YEL077C, YER033C, YER034W, YER045C, YER145C, YER146W, YFL026W, YFL027C, YFL062W, YGL156W, YGR140W, YGR200C, YGR249W, YGR251W, YGR279C, YHL024W, YHL028W, YHL029C, YHL039W, YHL040C, YHR005C, YHR136C, YHR137W, YHR170W, YHR213W, YIL010W, YIL012W, YIL013C, YIL099W, YIL118W, YIL120W, YIL132C, YIL170W, YIL171W, YIL172C, YIL173W, YIL174W, YIL175W, YIR020C, YJL076W, YJL077C, YJL079C, YJL105W, YJL138C, YJL217W, YJL218W, YJL219W, YJL221C, YJR094C, YJR095W, YJR127C, YJR158W, YJR159W, YKL058W, YKL059C, YKL062W, YKL063C, YKL108W, YKL109W, YKL110C, YKR102W, YLL028W, YLL063C, YLR004C, YLR005W, YLR044C, YLR046C, YML115C, YML116W, YML131W, YMR004W, YMR011W, YMR015C, YMR016C, YMR017W, YMR018W, YMR019W, YMR020W, YMR135C, YMR136W, YMR137C, YMR138W, YMR195W, YMR265C, YMR266W, YNL145W, YNL178W, YNL332W, YNL335W, YOL154W, YOR107W, YOR161C, YOR179C, YOR355W, YPL024W, YPL025C, YPL081W, YPL082C, YPL177C, YPL230W, YPL265W, YPL283C, YPR013C, YPR065W, YPR202W, YPR203W	YCR040W, YIL082W-A, YML112W, YOL047C, YGL009C, YKL043W, YGR279C, YHL047C, YIL082W, YJR053W, YKR038C, YKR042W, YKR013W, YLR279W, YMR044W, YOR226C, YDR193W, YDR221W, YFR035C, YHR143W-A, YHR116W, YOR382W, YER011W, YCR079W, YFR005C, YIR034C, YJR116W, YOR351C, YPL187W, YER026C, YHR208W, YML085C, YBR067C, YDR461W, YNL146W, YOL073C, YPR013C, YPR015C, YCL018W, YER083C, YIL015W, YML055W, YNL300W, YPL219W, YMR230W, YMR202W, YNL279W, YER154W, YJR148W, YAL012W, YAL014C, YER001W, YKL118W, YFL018C, YLR348C, YMR139W, YOL144W, YOL086C, YPL195W, YKL209C, YKL178C, YPL120W, YLR343W, YLR349W, YMR081C, YOL111C, YOL143C, YOR221C, YBL032W, YJL158C, YKL177W, YNR032W, YKR093W, YOR239W, YLR040C, YLR042C, YLR420W, YCL066W, YKR086W, YML126C, YAL022C, YKL120W, YLR041W, YOR084W, YCR097W, YFL026W, YOL126C, YOR383C, YGL089C, YOR366W, YJR004C, YKL216W, YNR044W, YNL322C, YPL163C, YLR303W, YOR247W, YEL038W, YPL011C, YLR302C, YOR246C, YOR248W, YAR031W, YGL032C, YDR104C, YOR034C, YER078C, YGR274C, YDR360W, YER073W	DAL82, GIS1, GSM1, MSN2, MSN4, RDS1, SKN7, SUT1, USV1, YER184C	"A | 0.065 0.490 0.010 0.010 0.010 0.935 0.045 0.260 
C | 0.563 0.330 0.070 0.010 0.965 0.010 0.125 0.470 
G | 0.291 0.125 0.010 0.970 0.010 0.045 0.280 0.170 
T | 0.080 0.055 0.910 0.010 0.015 0.010 0.550 0.100 
"
PHO2	YDL106C, phoB, GRF10, BAS2	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	ATTAATTAATGGG	0.0019397155	5.93	6.84829	10.11	"Homeobox transcription factor; regulatory targets include genes involved in phosphate metabolism; binds cooperatively with Pho4p to the PHO5 promoter; phosphorylation of Pho2p facilitates interaction with Pho4p
"	YBL004W, YBL048W, YBL049W, YBR044C, YBR081C, YBR085C-A, YBR161W, YBR190W, YBR191W, YBR238C, YCL030C, YCR024C-A, YCR026C, YDL017W, YDL018C, YDL032W, YDL035C, YDL056W, YDL058W, YDL059C, YDL189W, YDL190C, YDL215C, YDL225W, YDL226C, YDR023W, YDR050C, YDR109C, YDR110W, YDR116C, YDR223W, YDR224C, YDR225W, YDR227W, YDR278C, YDR306C, YDR307W, YDR308C, YDR507C, YDR509W, YEL001C, YEL027W, YEL032W, YER099C, YER100W, YFR013W, YGL187C, YGR033C, YGR034W, YGR106C, YGR151C, YGR152C, YGR153W, YGR189C, YGR190C, YGR192C, YGR202C, YGR203W, YGR205W, YGR229C, YGR230W, YHR210C, YHR211W, YHR212C, YHR214W, YHR214W-A, YIL016W, YIL076W, YIL077C, YIL123W, YIL147C, YIL148W, YIL149C, YIL166C, YJL022W, YJL039C, YJL099W, YJL104W, YJL161W, YJL191W, YJL192C, YJR123W, YKL006C-A, YKL006W, YKL038W, YKL049C, YKL060C, YKL081W, YKL082C, YKL106W, YKL150W, YKL151C, YLL043W, YLL045C, YLR029C, YLR030W, YLR055C, YLR056W, YLR152C, YLR232W, YLR300W, YLR390W-A, YLR431C, YLR432W, YLR433C, YLR434C, YML075C, YMR005W, YMR055C, YMR111C, YMR170C, YMR176W, YNL024C, YNL027W, YNL029C, YNL043C, YNL057W, YNL059C, YNL080C, YNL132W, YNL233W, YNL238W, YNR028W, YOL036W, YOL056W, YOL148C, YOR042W, YOR062C, YOR063W, YOR133W, YOR213C, YOR311C, YOR337W, YPL130W, YPR002C-A, YPR011C, YPR012W, YPR072W, YPR073C, YPR149W, YPR194C	YGL234W, YIL116W, YJR016C, YLR278C, YLR250W, YMR012W, YNL016W, YOR193W, YPL241C, YBR187W, YDL100C, YDL131W, YDR222W, YJL117W, YLR058C, YLR092W, YMR220W, YOR071C, YOR377W, YPL017C, YPL019C, YDR399W, YLR243W, YMR011W, YNL051W, YOL011W, YNR062C, YOR192C, YOR222W, YPL177C, YPL208W, YPL240C, YPL210C, YMR198W, YGR153W, YLR057W, YLR059C, YLR460C, YNL210W, YOR066W, YOR038C, YPL016W, YPL018W, YPL052W, YHR053C, YHR055C, YLL034C, YNL175C, YOL077C, YOR321W, YPL266W, YPR048W, YOR359W, YPL283C, YDL226C, YER055C, YGL105W, YGR250C, YJL145W, YLR156W, YML027W, YNL333W, YNR028W, YHR183W, YBR093C, YJL017W, YLL063C, YLR341W, YMR070W, YMR100W, YMR131C, YMR104C, YMR135C, YNL174W, YNL116W, YOL076W, YBL024W, YBL058W, YBR288C, YDR281C, YER056C, YGR211W, YGR213C, YLR119W, YLR121C, YLR123C, YLR155C, YLR157C, YNL332W, YBR012C, YCR050C, YLR282C, YLR254C, YML123C, YOL052C-A, YNR071C, YOR197W, YAR015W, YKL051W, YLR064W, YLR066W, YLR036C, YLR038C, YLR439W, YMR173W, YNL247W, YOR043W, YBL091C, YBR041W, YCL064C, YJR025C, YKR048C, YKR080W, YKR084C, YLR251W, YLR281C, YLR227C, YNL059C, YOR198C, YOR264W, YJR148W, YAL043C-A, YJL124C, YLR438W, YLR411W, YNL220W, YOR074C, YOR046C, YDR533C, YOL144W, YOL150C, YOR323C, YOR355W, YBR265W, YCL030C, YHR215W, YLR158C, YLR160C, YLR194C, YML093W, YNL309W, YNR033W, YNR035C, YPL088W, YPL122C, YPL092W, YFL014W, YDL040C, YFL048C, YHR064C, YIR035C, YKL021C, YJR156C, YLR343W, YMR142C, YMR144W, YNL182C, YOL143C, YOR356W, YAR071W, YBR296C, YDL229W, YDR346C, YER064C, YGL148W, YLR159W, YLR161W, YML035C, YMR290W-A, YMR319C, YNL312W, YNR038W, YPL091W, YER060W, YKR061W, YLR295C, YML131W, YOL027C, YDL112W, YDL084W, YGR138C, YKL127W, YLR040C, YLR104W, YLR110C, YML010C-B, YLR420W, YBR088C, YER156C, YGL245W, YML126C, YML130C, YNL064C, YNL096C, YNL035C, YNL098C, YOL057W, YOL059W, YOR240W, YPL226W, YAR018C, YEL059C-A, YFR051C, YGR139W, YHR133C, YHR163W, YKL120W, YLR041W, YLR043C, YLR446W, YML010W, YMR173W-A, YMR235C, YMR241W, YNL256W, YNL290W, YPL030W, YPL032C, YPL063W, YDL021W, YFL059W, YGR019W, YGR079W, YJL038C, YKL030W, YLR356W, YLR390W, YMR120C, YMR091C, YOL156W, YOL126C, YDL178W, YDR292C, YDR353W, YDR294C, YER072W, YGL087C, YGR260W, YJL167W, YLR142W, YLR204W, YML072C, YMR300C, YPL158C, YBR143C, YDL014W, YDR143C, YDR481C, YFL056C, YGR078C, YJR131W, YLL049W, YLR387C, YMR146C, YMR086W, YMR119W-A, YNL126W, YNL158W, YNL160W, YOL089C, YOL119C, YBR266C, YCL031C, YER044C, YGR261C, YKL216W, YMR301C, YPL163C, YBR054W, YIL170W, YLR297W, YLR299W, YLR270W, YLR242C, YNL046W, YAR053W, YHR136C, YLR080W, YLR050C, YLR054C, YLR118C, YLR453C, YMR182C, YMR214W, YMR186W, YOR091W, YCR005C, YFL004W, YHL003C, YHL033C, YLR237W, YLR267W, YLR300W, YMR005W, YNL108C, YOL036W, YOL038W, YOL069W, YPL198W, YDL117W, YEL037C, YGL032C, YHR135C, YHR201C, YLR047C, YLR049C, YLR456W, YMR181C, YMR215W, YNL264C, YOR090C, YDL029W, YFR028C, YHR076W, YJL012C, YLR332W, YLR364W, YMR093W, YOL134C, YOR339C, YOR309C, YDL182W, YGR204W, YGR208W, YIL074C, YLR174W, YLR146C, YLR178C, YBR089W, YCR102C, YGR086C, YLL019C, YLR359W, YLR390W-A, YLR395C, YNL134C, YOL097C, YOL163W, YOL165C, YOR338W, YOR372C, YER073W, YKR001C, YLR173W, YLR145W, YLR147C, YLR149C, YLR179C, YOR184W, YER061C	None	"A | 0.500 0.061 0.198 0.770 0.800 0.180 0.200 0.772 0.586 0.300 0.140 0.150 0.140 
C | 0.040 0.222 0.020 0.020 0.010 0.010 0.010 0.010 0.131 0.110 0.180 0.320 0.180 
G | 0.070 0.131 0.010 0.010 0.010 0.010 0.020 0.020 0.222 0.130 0.430 0.380 0.550 
T | 0.390 0.586 0.772 0.200 0.180 0.800 0.770 0.198 0.061 0.460 0.250 0.150 0.130 
"
PHO4	YFR034C, phoD	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	GCACGTGG	4.280452e-16	8.99	11.7616	11.06	"Basic helix-loop-helix (bHLH) transcription factor of the myc-family; binds cooperatively with Pho2p to the PHO5 promoter; function is regulated by phosphorylation at multiple sites and by phosphate availability
"	YAR014C, YAR015W, YAR019C, YBR065C, YBR152W, YBR193C, YBR194W, YCL034W, YCL035C, YCL063W, YCL064C, YCR066W, YDL004W, YDL005C, YDL013W, YDL179W, YDR070C, YDR164C, YDR165W, YDR281C, YDR283C, YDR294C, YDR411C, YDR412W, YDR440W, YDR534C, YEL001C, YEL026W, YER033C, YER034W, YER061C, YER078C, YER079W, YER085C, YER086W, YER129W, YER163C, YFL009W, YFL010C, YFL010W-A, YFR026C, YFR044C, YFR045W, YGL058W, YGL079W, YGL099W, YGL130W, YGL131C, YGL133W, YGL139W, YGL140C, YGL258W, YGR106C, YGR167W, YGR253C, YGR273C, YHR024C, YHR025W, YHR053C, YHR054C, YHR055C, YHR130C, YHR131C, YHR132W-A, YHR178W, YHR207C, YHR208W, YHR210C, YHR211W, YHR212C, YHR214W, YHR214W-A, YIL036W, YIL037C, YIL076W, YIL077C, YIL121W, YIL136W, YIL137C, YIL147C, YJL051W, YJL102W, YJL103C, YJL172W, YJL173C, YJL200C, YJR004C, YJR005W, YJR030C, YJR058C, YJR059W, YJR098C, YJR099W, YKL084W, YKL142W, YKL150W, YKL151C, YKR084C, YLR008C, YLR009W, YLR152C, YLR205C, YLR206W, YLR266C, YLR267W, YLR382C, YLR383W, YLR397C, YLR439W, YML029W, YML030W, YML032C, YML065W, YML066C, YML069W, YMR062C, YMR063W, YMR102C, YMR222C, YMR223W, YMR267W, YNL009W, YNL027W, YNL029C, YNL057W, YNL059C, YNL186W, YNL230C, YNL233W, YNL238W, YNL241C, YNL269W, YNL271C, YNL333W, YNL334C, YOL148C, YOL160W, YOR126C, YOR127W, YOR162C, YOR163W, YOR164C, YOR165W, YOR237W, YOR273C, YOR274W, YOR337W, YOR390W, YPL012W, YPL013C, YPL027W, YPL132W, YPL133C, YPL160W, YPL161C, YPL216W, YPL217C, YPL251W, YPL253C, YPR004C, YPR025C, YPR026W, YPR036W, YPR105C, YPR106W	YDR372C, YGL173C, YKR043C, YLR244C, YLR216C, YNL052W, YNR061C, YOR191W, YBR189W, YDR220C, YHR178W, YJL053W, YLR406C, YMR224C, YMR194W, YOR377W, YOR381W, YGL231C, YHL015W, YHL047C, YKR013W, YOR220W, YOR258W, YJR078W, YBR218C, YGL038C, YFR033C, YMR189W, YPL018W, YOR382W, YBL034C, YFL013W-A, YKL016C, YKR105C, YLL034C, YOR317W, YBL021C, YDR314C, YLR156W, YBR067C, YGR034W, YJL019W, YMR072W, YMR136W, YOL073C, YOL139C, YPL265W, YGL076C, YNL300W, YNL302C, YPL079W, YPL081W, YIL092W, YIL124W, YLR287C-A, YMR020W, YMR022W, YOR203W, YPL245W, YPL247C, YAL011W, YLR066W, YDR411C, YLR225C, YLR285W, YOR196C, YOR198C, YPL249C-A, YML111W, YAL014C, YDL135C, YDL075W, YDR225W, YEL051W, YLR101C, YML001W, YDL041W, YHR063C, YLR344W, YOR298W, YPR028W, YPR060C, YBR265W, YHR215W, YBR071W, YDL012C, YDR538W, YJR123W, YMR142C, YOL111C, YOR352W, YOR298C-A, YPL273W, YAR075W, YGL148W, YJL158C, YLR161W, YML063W, YMR321C, YMR295C, YNL312W, YER137C, YIL064W, YBR052C, YDR418W, YDR450W, YER187W-A, YER131W, YHR010W, YHR012W, YIL098C, YJR038C, YKR057W, YLR293C, YLR264W, YLR295C, YNL067W, YNL069C, YOL031C, YOR209C, YPL225W, YLR042C, YBR047W, YDR447C, YDR417C, YGL214W, YHL001W, YHL031C, YLR292C, YLR294C, YNL031C, YNL096C, YAR027W, YDL111C, YDL081C, YDL143W, YDL083C, YDR209C, YGR137W, YJL102W, YLR075W, YLR448W, YMR173W-A, YPL004C, YBR140C, YBR299W, YBR108W, YBR080C, YBR082C, YBR112C, YBR144C, YDL021W, YDR110W, YDR173C, YDR543C, YDR545W, YGR081C, YJL036W, YKL001C, YLL017W, YMR119W, YNL191W, YOL120C, YOL122C, YOR331C, YOR367W, YOR383C, YGR266W, YJL167W, YMR304C-A, YDR174W, YDR509W, YLL045C, YLR351C, YLR325C, YMR146C, YMR119W-A, YNL162W, YOL121C, YDR297W, YKL156W, YLR167W, YML067C, YML073C, YNL322C, YPL131W, YPL163C, YBR022W, YBL107C, YBR026C, YDR396W, YHR018C, YIL102C, YLR268W, YNL109W, YEL027W, YBR181C, YDL120W, YEL065W, YPL074W, YCR005C, YDR033W, YER167W, YPL198W, YBR244W, YHR137W, YHR139C, YHR203C, YJL076W, YKL065C, YKL096W-A, YLR047C, YMR215W, YPL010W, YGR085C, YGR027C, YGR089W, YKL035W, YMR095C, YMR130W, YOR369C, YMR276W, YBR089W, YLL051C, YMR094W, YMR096W, YOR306C, YDR360W, YER102W, YGL158W, YGL100W, YGR267C, YGR273C, YIL041W, YIL043C, YKL197C, YMR307W	HAC1, MET32	"A | 0.126 0.091 0.975 0.024 0.037 0.009 0.060 0.078 
C | 0.214 0.881 0.008 0.854 0.020 0.015 0.005 0.256 
G | 0.568 0.020 0.012 0.067 0.920 0.009 0.918 0.647 
T | 0.092 0.008 0.005 0.055 0.023 0.967 0.017 0.019 
"
PIP2	YOR363C, OAF2	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	GCCAATACGCCGGCCTAT	0.01376739	11.51	18.8548	19.37	"Autoregulatory oleate-specific transcriptional activator of peroxisome proliferation, contains Zn(2)-Cys(6) cluster domain, forms heterodimer with Oaf1p, binds oleate response elements (OREs), activates beta-oxidation genes
"	YAL016W, YAL034W-A, YAL035W, YAL036C, YAR066W, YBL089W, YBR019C, YBR020W, YBR048W, YBR127C, YBR150C, YBR151W, YBR187W, YBR214W, YCL068C, YCR081W, YCR106W, YDL058W, YDL059C, YDL123W, YDR048C, YDR142C, YDR207C, YDR208W, YDR210W-D, YDR256C, YDR312W, YEL011W, YEL054C, YER015W, YER049W, YER138C, YFR015C, YGL143C, YGL172W, YGL173C, YGL201C, YGL235W, YGL237C, YGR109C, YGR109W-A, YGR109W-B, YGR145W, YGR177C, YGR188C, YHL017W, YHL021C, YHR041C, YHR042W, YHR117W, YHR171W, YIL014W, YIL069C, YIL100W, YIL101C, YIL113W, YIL114C, YIL120W, YIL125W, YJL023C, YJL148W, YJL222W, YJR045C, YJR046W, YJR065C, YJR066W, YJR069C, YJR071W, YKL054C, YKL092C, YKL093W, YKL146W, YKL148C, YKL211C, YKR096W, YLR046C, YLR078C, YLR079W, YLR089C, YLR090W, YLR174W, YLR176C, YLR177W, YLR239C, YLR240W, YLR251W, YLR252W, YML006C, YML072C, YMR043W, YMR107W, YMR165C, YMR324C, YMR325W, YNL006W, YNL007C, YNL113W, YNL115C, YNL299W, YNL321W, YNL322C, YOL083W, YOR301W, YOR329C, YPL016W, YPL017C, YPL059W, YPL060C-A, YPL262W, YPL263C, YPR166C	YBR002C, YBL090W, YCR012W, YCR040W, YCR016W, YDR064W, YER112W, YGR280C, YGR282C, YIL148W, YJR085C, YJR022W, YLR250W, YNL081C, YOR253W, YOR225W, YOR257W, YPL239W, YPL211W, YKL122C, YBR191W, YDL064W, YDL128W, YDL131W, YDR188W, YEL046C, YFR032C-A, YGL009C, YHR143W, YHR174W, YLR025W, YLR056W, YLR060W, YLR062C, YLR432W, YLR406C, YMR194W, YNL211C, YOR002W, YOR067C, YOR006C, YOR008C, YOR071C, YPL049C, YBR001C, YBR031W, YBL087C, YCR013C, YCR041W, YCR043C, YDR063W, YDR397C, YER117W, YER146W, YGL231C, YGR275W, YGR279C, YIL082W, YKR042W, YLR275W, YMR011W, YML115C, YMR015C, YOR252W, YOR192C, YOR224C, YOR226C, YCR097W-A, YAL034C, YAL069W, YBR190W, YDL061C, YFR035C, YGL012W, YGR155W, YGR157W, YHR142W, YHR143W-A, YHR147C, YJL052W, YLR089C, YLR028C, YLR061W, YLR435W, YLR466W, YMR221C, YMR193C-A, YMR225C, YNL244C, YOR066W, YBR062C, YCR082W, YDR096W, YDR164C, YDR529C, YDR500C, YFR005C, YGR063C, YHR081W, YHR053C, YHR025W, YHR055C, YIR034C, YJR143C, YJR147W, YJR149W, YLL028W, YLR340W, YLR372W, YLR374C, YMR071C, YMR134W, YNL147W, YNL149C, YOL136C, YOL142W, YOR285W, YOR287C, YOR317W, YOR347C, YOR321W, YOR351C, YPR050C, YPR020W, YPR052C, YPL036W, YPL187W, YAR064W, YAR068W, YBL027W, YBL059W, YBR283C, YBR253W, YCL017C, YDR339C, YER086W, YGL103W, YGL077C, YGR180C, YGR182C, YHR208W, YIL016W, YIL052C, YKL137W, YML023C, YML056C, YML085C, YML029W, YMR286W, YMR256C, YNR026C, YNL307C, YNR032C-A, YOR103C, YPL142C, YPL144W, YHR183W, YBR091C, YBR067C, YDR461W, YDR493W, YFR006W, YGR030C, YGR034W, YGR064W, YHR021C, YJR146W, YJR117W, YLL029W, YKR106W, YLR304C, YLR339C, YMR074C, YNL110C, YNL176C, YNL114C, YNL146W, YNL178W, YOL077W-A, YOL109W, YOR286W, YPR013C, YPL271W, YNL251C, YNL287W, YAR062W, YBL026W, YBR282W, YBR252W, YBR254C, YCL018W, YBR256C, YDL191W, YDR281C, YER052C, YER025W, YER056C, YGL070C, YGL102C, YGR211W, YGR181W, YGR215W, YGR185C, YIL015W, YHR211W, YJL178C, YJL148W, YKL140W, YLR121C, YLR153C, YLR185W, YLR125W, YML024W, YML055W, YML084W, YML026C, YML057W, YML086C, YMR253C, YMR255W, YNL302C, YNL306W, YPL143W, YPL145C, YPL147W, YBL091C-A, YBR010W, YDR012W, YDR378C, YDR412W, YJR058C, YJR094W-A, YLR286C, YLR287C-A, YML123C, YMR022W, YNL030W, YOL019W, YOR265W, YOR203W, YPL183W-A, YPL247C, YAL041W, YAL043C, YBR197C, YBR169C, YDL133C-A, YDL136W, YDR224C, YER002W, YFR044C, YHR123W, YHR188C, YJL093C, YKL053C-A, YLR066W, YLR098C, YLR068W, YLR038C, YLR438C-A, YLR439W, YMR230W, YNL247W, YNL279W, YNL219C, YNL283C, YOR011W, YOR045W, YBL092W, YBR009C, YCL058C, YDR077W, YDR373W, YDR377W, YER154W, YGR285C, YIL153W, YIL123W, YOR234C, YPL184C, YPL249C-A, YJR148W, YLR200W, YAL010C, YAL012W, YAL016W, YAL045C, YBR162W-A, YBR194W, YBR196C, YDL075W, YDR225W, YDR261C, YJL122W, YKL081W, YKL116C, YLR034C, YLR065C, YMR171C, YOR008C-A, YOR014W, YOR078W, YDR502C, YFR011C, YGR037C, YGR011W, YJR151C, YLL009C, YLR344W, YLR348C, YMR139W, YOL144W, YOL146W, YOL086C, YOR293W, YOR327C, YOR357C, YOR329C, YBL062W, YBL003C, YDL232W, YGR254W, YHR214W, YKL209C, YKL178C, YMR260C, YNR037C, YPL092W, YJL062W, YDR139C, YDR471W, YFL017W-A, YHR032W, YJR121W, YLL010C, YLR343W, YLR379W, YLR349W, YMR138W, YMR081C, YMR112C, YNL150W, YNL184C, YOL143C, YOR322C, YPR053C, YPL279C, YOR221C, YBL028C, YAR075W, YBL032W, YBR262C, YDL229W, YGL080W, YGR189C, YHR213W, YHR214W-A, YHR216W, YIL027C, YJL184W, YJL188C, YJL158C, YKL175W, YKL146W, YKL177W, YML030W, YML094W, YML095C-A, YMR263W, YMR323W, YER060W, YCR023C, YDR086C, YDR450W, YER131W, YGL189C, YHR010W, YIL158W, YIL162W, YKR057W, YKR093W, YLR262C-A, YLR264W, YLR295C, YMR057C, YNL038W, YOL002C, YOR237W, YOR239W, YPL221W, YPL225W, YBR171W, YDR232W, YDR234W, YEL058W, YHR190W, YJL101C, YKL058W, YLR040C, YLR104W, YLR044C, YLR420W, YMR242C, YNL255C, YNL259C, YOR081C, YOR085W, YOR393W, YPL037C, YCL066W, YCR053W, YCR060W, YDR447C, YGL245W, YHR005C-A, YHL001W, YIL127C, YJR063W, YKR027W, YLR292C, YML126C, YNL066W, YOL026C, YOL030W, YOL061W, YOR270C, YOR210W, YAL022C, YDL141W, YDL081C, YDL083C, YFR049W, YGL056C, YGL028C, YGR109W-A, YKL120W, YLR041W, YLR043C, YML009C, YMR203W, YMR205C, YMR237W, YOR018W, YOR082C, YOR020C, YOR084W, YPL032C, YPL063W, YBR082C, YBR084C-A, YCR097W, YDR510W, YFL026W, YHR072W-A, YKL032C, YKL003C, YKL033W-A, YLR388W, YLR326W, YOL126C, YOR365C, YPR062W, YDL208W, YDR322C-A, YDR294C, YDR357C, YER043C, YGL087C, YGL089C, YGR260W, YHR219W, YIL032C, YIL004C, YIL036W, YLR170C, YLR204W, YNL321W, YBR109C, YBR145W, YCR090C, YDL045W-A, YDR115W, YFL023W, YFR020W, YGR020C, YIR016W, YJR131W, YLL014W, YLL018C, YLR325C, YNL190W, YNL162W, YOL121C, YOR330C, YPL281C, YBL006C, YBR268W, YCL035C, YGL088W, YJR004C, YJL166W, YKL216W, YKL156W, YLR167W, YNR044W, YNL322C, YBL107C, YDR056C, YDR454C, YDR396W, YGL191W, YIL138C, YJR104C, YJR046W, YLR303W, YMR035W, YMR006C, YMR037C, YOR277C, YOR247W, YAL033W, YER019C-A, YEL071W, YGL031C, YGR148C, YHR136C, YHR141C, YJL141C, YKL099C, YKL133C, YMR245W, YOR089C, YPL013C, YPL076W, YPR159W, YER012W, YBR053C, YCR028C-A, YCR003W, YCR071C, YGL255W, YIL169C, YIL171W, YJR077C, YKR094C, YLR237W, YLR300W, YLR302C, YMR003W, YNL070W, YNL045W, YOL040C, YOL071W, YOR276W, YOR248W, YOR282W, YBR210W, YBR244W, YDL121C, YGL030W, YGL032C, YGR118W, YJL136C, YKL069W, YLR047C, YLR051C, YLR083C, YLR421C, YMR215W, YNL268W, YPL071C, YPL010W, YCL004W, YBR090C, YFL034C-A, YFL067W, YFL037W, YGR085C, YGR027C, YIR020W-B, YIR022W, YJR135W-A, YKL006W, YKL008C, YLR394W, YLR332W, YOR307C, YOR369C, YOR375C, YPR074C, YPR044C, YOR034C, YCL007C, YDL184C, YER074W, YER048C, YIL008W, YIL040W, YJL173C, YKL164C, YKL196C, YLR180W, YML108W, YNR022C, YPL170W, YKL006C-A, YLR022C, YLR395C, YLR333C, YMR123W, YNL138W, YOL127W, YOL159C, YOR306C, YOR312C, YPR073C, YPR043W, YBL018C, YDR328C, YDR305C, YER073W, YER048W-A, YGR209C, YIL069C, YKL160W, YLR147C, YLR177W, YML077W, YML079W, YML081C-A, YOR182C	None	"A | 0.010 0.180 0.010 0.960 0.970 0.300 0.370 0.050 0.060 0.030 0.460 0.170 0.010 0.010 0.010 0.360 0.530 0.119 
C | 0.347 0.340 0.970 0.010 0.010 0.010 0.310 0.810 0.280 0.730 0.500 0.010 0.010 0.970 0.960 0.100 0.010 0.010 
G | 0.426 0.190 0.010 0.020 0.010 0.090 0.020 0.130 0.360 0.130 0.010 0.600 0.970 0.010 0.010 0.030 0.340 0.426 
T | 0.218 0.290 0.010 0.010 0.010 0.600 0.300 0.010 0.300 0.110 0.030 0.220 0.010 0.010 0.020 0.510 0.120 0.446 
"
PPR1	YLR014C	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	TTAAAGTACTCGTG	0.0008530492	10.24	17.2255	15.69	"Zinc finger transcription factor containing a Zn(2)-Cys(6) binuclear cluster domain, positively regulates transcription of genes involved in uracil biosynthesis; activity may be modulated by interaction with Tup1p
"	YAL060W, YBL018C, YBL068W, YBL070C, YBR065C, YBR109C, YBR110W, YBR127C, YBR214W, YCR039C, YCR040W, YCR041W, YDL054C, YDL092W, YDL094C, YDL141W, YDL142C, YDL156W, YDL157C, YDL158C, YDL159W, YDL160C, YDL175C, YDR020C, YDR021W, YDR028C, YDR029W, YDR048C, YDR061W, YDR084C, YDR136C, YDR138W, YDR142C, YDR183W, YDR294C, YDR375C, YDR376W, YDR440W, YEL010W, YER008C, YER009W, YER022W, YFR001W, YGL130W, YGL131C, YGL134W, YGL143C, YGL144C, YGR145W, YGR177C, YGR188C, YGR225W, YGR261C, YHR164C, YIL038C, YIL161W, YJL023C, YJL145W, YJL179W, YJL180C, YJL203W, YJL204C, YKL145W, YKL147C, YKL202W, YKL203C, YKR014C, YKR022C, YKR023W, YKR035C, YKR051W, YLR239C, YLR240W, YLR288C, YLR289W, YLR418C, YLR419W, YLR429W, YML077W, YMR060C, YMR061W, YMR126C, YNL009W, YNL111C, YNL247W, YNL248C, YNL299W, YNL321W, YNL322C, YNL323W, YNL325C, YNR054C, YOL083W, YOL095C, YOR021C, YOR040W, YOR090C, YOR091W, YOR093C, YOR094W, YOR112W, YOR296W, YPL129W, YPR049C, YPR051W, YPR081C	YGR278W, YHL014C, YML114C, YHR146W, YDR207C, YMR042W, YOR226C, YPL177C, YKL170W, YMR314W, YBR093C, YBR129C, YMR102C, YDR281C, YER029C, YKL142W, YKL206C, YLR119W, YOR132W, YBR044C, YLR257W, YNL088W, YAR015W, YGR132C, YJL123C, YLR438C-A, YOR075W, YKR080W, YFR041C, YLR099C, YGL153W, YOL144W, YBL060W, YHR215W, YGR012W, YOL143C, YAR071W, YPR167C, YIL130W, YLR420W, YNL289W, YGR137W, YKL030W, YKL001C, YOL126C, YLR014C, YKL216W, YDR088C, YHR200W, YBR244W, YHR135C, YLR079W, YPL040C, YGR089W	None	"A | 0.050 0.010 0.564 0.970 0.939 0.010 0.010 0.350 0.010 0.010 0.010 0.290 0.080 0.010 
C | 0.010 0.010 0.010 0.010 0.020 0.010 0.350 0.330 0.970 0.010 0.890 0.010 0.010 0.010 
G | 0.010 0.099 0.416 0.010 0.010 0.970 0.010 0.010 0.010 0.010 0.010 0.480 0.230 0.800 
T | 0.930 0.881 0.010 0.010 0.030 0.010 0.630 0.310 0.010 0.970 0.090 0.220 0.680 0.180 
"
PUT3	YKL015W	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	CGGGAAGCCAATCCCG	2.9351304e-15	12.39	12.4023	16.81	"Transcriptional activator of proline utilization genes, constitutively binds PUT1 and PUT2 promoter sequences and undergoes a conformational change to form the active state; has a Zn(2)-Cys(6) binuclear cluster domain
"	YAL004W, YAR068W, YBL032W, YBL033C, YBL063W, YBL064C, YBR035C, YBR161W, YBR230C, YDL014W, YDL015C, YDL020C, YDL024C, YDL045W-A, YDL129W, YDL191W, YDL215C, YDR226W, YDR306C, YEL055C, YER060W, YER093C-A, YER137C, YER159C, YFR032C, YFR035C, YGL103W, YGL104C, YGL123W, YGL124C, YGR123C, YGR124W, YGR125W, YGR239C, YGR256W, YHL034C, YHR033W, YHR037W, YIL133C, YJL045W, YKL123W, YKL124W, YKR073C, YLL027W, YLR055C, YLR056W, YLR139C, YLR142W, YLR152C, YML102W, YML103C, YML124C, YNL016W, YNL017C, YOL026C, YOL155C, YOR236W, YOR272W, YOR302W, YOR303W, YOR306C, YPL130W, YPR149W	YCR010C, YCR040W, YGR280C, YGR282C, YJR020W, YKR012C, YOR225W, YFR032C-A, YGL009C, YLR025W, YMR194W, YBR031W, YCR013C, YGR279C, YIL082W, YKR042W, YKR013W, YMR044W, YOR194C, YOR226C, YCR097W-A, YGR096W, YHR142W, YHR143W-A, YJL118W, YLR089C, YOR066W, YPL048W, YCR073W-A, YFL012W, YFR005C, YHR025W, YIR034C, YLR340W, YLR372W, YLR374C, YNL149C, YOR347C, YOR351C, YPL187W, YBR283C, YER026C, YHR208W, YML085C, YBR067C, YDR461W, YKL015W, YLR339C, YNL110C, YNL146W, YCL018W, YDL191W, YER083C, YIL015W, YIL019W, YKL136W, YLR185W, YML055W, YNL300W, YLR287C-A, YNL058C, YNL030W, YOR229W, YDL133C-A, YDL136W, YFR044C, YHR123W, YLR439W, YMR230W, YNL279W, YDR077W, YER154W, YGL237C, YIL153W, YNL057W, YJR148W, YAL012W, YAL014C, YBR168W, YER001W, YER003C, YLR101C, YMR169C, YDR502C, YFL018C, YOL144W, YOL086C, YPL195W, YKL209C, YKL178C, YMR260C, YPL092W, YHR199C, YLR343W, YLR349W, YOL143C, YNL041C, YNR043W, YAR075W, YBL032W, YHR216W, YJL158C, YKL146W, YKL177W, YML090W, YCR059C, YER131W, YHR010W, YIL100W, YKR093W, YOR239W, YHR190W, YLR040C, YLR420W, YDL058W, YCL066W, YHR005C-A, YKR086W, YML126C, YOR210W, YAL018C, YAL022C, YDL113C, YER008C, YGR109W-A, YKL120W, YLR041W, YOR084W, YCR097W, YFL026W, YHR037W, YHR072W-A, YOL126C, YOR383C, YGL089C, YMR304C-A, YFL023W, YNL162W, YGR233C, YJR004C, YKL216W, YNR042W, YNR044W, YNL322C, YDR056C, YGL256W, YLR303W, YOR247W, YER019C-A, YEL038W, YGR172C, YGR148C, YHR141C, YJL079C, YML019W, YNL263C, YOR063W, YLR302C, YNL045W, YOR248W, YGL032C, YLR051C, YBR118W, YFL037W, YOR307C, YPR012W, YOR034C, YCL009C, YDL184C, YGR274C, YJR009C, YKL164C, YMR276W, YMR305C, YOR306C, YER073W, YOR182C	None	"A | 0.045 0.168 0.021 0.178 0.446 0.513 0.105 0.060 0.026 0.403 0.387 0.179 0.077 0.046 0.035 0.080 
C | 0.781 0.068 0.086 0.201 0.163 0.179 0.335 0.892 0.649 0.369 0.337 0.299 0.498 0.658 0.869 0.086 
G | 0.109 0.649 0.859 0.367 0.162 0.168 0.461 0.018 0.278 0.077 0.066 0.126 0.235 0.183 0.038 0.748 
T | 0.065 0.115 0.034 0.255 0.228 0.140 0.099 0.030 0.047 0.152 0.210 0.396 0.191 0.113 0.058 0.086 
"
RAP1	YNL216W, TUF1, TBA1, GRF1	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	ACACCCATACATC	5.579222e-108	8.23	15.2775	14.83	"DNA-binding protein involved in either activation or repression of transcription, depending on binding site context; also binds telomere sequences and plays a role in telomeric position effect (silencing) and telomere structure
"	YAL033W, YAL034C, YAL040C, YAL053W, YAL054C, YBL022C, YBL029W, YBL048W, YBL049W, YBL072C, YBL087C, YBL092W, YBL093C, YBL109W, YBL111C, YBL112C, YBL113C, YBR084C-A, YBR085W, YBR116C, YBR117C, YBR118W, YBR181C, YBR188C, YBR189W, YBR190W, YBR191W, YBR196C, YCL024W, YCL025C, YCL030C, YCL036W, YCL037C, YCL065W, YCL066W, YCL067C, YCR024C-A, YCR025C, YCR039C, YCR040W, YCR041W, YDL022W, YDL032W, YDL035C, YDL060W, YDL061C, YDL075W, YDL076C, YDL082W, YDL083C, YDL130W, YDL133W, YDL136W, YDL184C, YDL186W, YDL188C, YDL191W, YDR024W, YDR025W, YDR064W, YDR100W, YDR109C, YDR110W, YDR111C, YDR186C, YDR188W, YDR210W-C, YDR240C, YDR247W, YDR259C, YDR270W, YDR300C, YDR301W, YDR312W, YDR324C, YDR325W, YDR393W, YDR418W, YDR447C, YDR448W, YDR449C, YDR450W, YDR470C, YDR471W, YDR500C, YDR501W, YDR543C, YDR544C, YDR545W, YEL007W, YEL008W, YEL009C, YEL022W, YEL023C, YEL036C, YEL051W, YEL054C, YEL074W, YEL075C, YEL076C, YEL076C-A, YER031C, YER032W, YER035W, YER046W, YER056C-A, YER059W, YER074W, YER088C, YER101C, YER102W, YER116C, YER117W, YER130C, YER131W, YER168C, YER169W, YFL014W, YFL015C, YFL016C, YFL021W, YFL022C, YFL023W, YFL024C, YFL034W, YFL046W, YFL063W, YFL064C, YFL065C, YFR031C-A, YGL030W, YGL031C, YGL071W, YGL072C, YGL073W, YGL074C, YGL075C, YGL103W, YGL104C, YGL115W, YGL123W, YGL124C, YGL135W, YGL136C, YGL147C, YGL188C, YGL189C, YGL258W, YGR032W, YGR033C, YGR034W, YGR038C-A, YGR050C, YGR087C, YGR117C, YGR118W, YGR143W, YGR148C, YGR149W, YGR150C, YGR180C, YGR182C, YGR192C, YGR213C, YGR214W, YGR258C, YGR283C, YGR296W, YHL001W, YHL015W, YHL016C, YHL038C, YHL049C, YHR021C, YHR021W-A, YHR033W, YHR091C, YHR096C, YHR122W, YHR141C, YHR142W, YHR203C, YHR204W, YIL012W, YIL013C, YIL018W, YIL053W, YIL057C, YIL069C, YIL121W, YIL133C, YIL148W, YIL149C, YIL174W, YIL175W, YIL177C, YIR016W, YJL026W, YJL027C, YJL046W, YJL047C, YJL078C, YJL079C, YJL089W, YJL090C, YJL133W, YJL134W, YJL135W, YJL136C, YJL177W, YJL178C, YJL189W, YJL190C, YJL191W, YJL192C, YJL225C, YJR058C, YJR059W, YJR132W, YJR134C, YJR135W-A, YJR139C, YJR145C, YJR146W, YJR147W, YKL006C-A, YKL006W, YKL060C, YKL062W, YKL081W, YKL082C, YKL150W, YKL151C, YKL152C, YKL156W, YKL180W, YKL182W, YKR087C, YKR092C, YKR094C, YKR095W, YLL037W, YLL039C, YLL043W, YLL045C, YLR023C, YLR044C, YLR047C, YLR048W, YLR061W, YLR112W, YLR166C, YLR167W, YLR174W, YLR183C, YLR184W, YLR185W, YLR255C, YLR256W, YLR256W-A, YLR286C, YLR287C-A, YLR300W, YLR311C, YLR312C, YLR312W-A, YLR325C, YLR326W, YLR333C, YLR340W, YLR344W, YLR387C, YLR388W, YLR390W-A, YLR399C, YLR400W, YLR401C, YLR402W, YLR406C, YLR407W, YLR441C, YLR447C, YLR448W, YLR452C, YLR462W, YLR463C, YLR464W, YLR465C, YLR466W, YLR467W, YML024W, YML025C, YML026C, YML063W, YML064C, YML073C, YML088W, YML089C, YML091C, YML133C, YMR013C, YMR015C, YMR116C, YMR142C, YMR143W, YMR194W, YMR205C, YMR206W, YMR224C, YMR229C, YMR230W, YMR231W, YMR242C, YMR265C, YMR266W, YNL010W, YNL011C, YNL027W, YNL029C, YNL069C, YNL096C, YNL101W, YNL144C, YNL162W, YNL163C, YNL190W, YNL216W, YNL288W, YNL302C, YNL309W, YNL311C, YNL329C, YNL337W, YNL338W, YNL339C, YNR076W, YOL039W, YOL040C, YOL052C-A, YOL059W, YOL060C, YOL082W, YOL086C, YOL109W, YOL120C, YOL121C, YOL127W, YOL128C, YOL136C, YOL158C, YOR032C, YOR056C, YOR057W, YOR095C, YOR096W, YOR100C, YOR101W, YOR124C, YOR161C, YOR182C, YOR183W, YOR234C, YOR268C, YOR269W, YOR292C, YOR293W, YOR296W, YOR302W, YOR303W, YOR312C, YOR317W, YOR338W, YOR342C, YOR343C, YOR344C, YOR359W, YOR365C, YOR367W, YPL016W, YPL017C, YPL054W, YPL055C, YPL056C, YPL079W, YPL080C, YPL090C, YPL131W, YPL142C, YPL143W, YPL145C, YPL220W, YPL283C, YPR029C, YPR030W, YPR042C, YPR043W, YPR080W, YPR102C, YPR103W, YPR105C, YPR106W, YPR131C, YPR132W, YPR149W, YPR161C, YPR192W, YPR202W, YPR203W	YBR004C, YCR012W, YCL055W, YCR016W, YDR034C-C, YDR064W, YDR404C, YER118C, YGL171W, YGL234W, YGR280C, YHL046C, YHL016C, YIL078W, YIL080W, YIL144W, YIL116W, YIL148W, YJR016C, YJR048W, YLR214W, YMR041C, YMR014W, YMR045C, YMR046W-A, YNL050C, YOL012C, YOL043C, YOR253W, YOR192C-A, YOR193W, YOR225W, YOR195W, YOR227W, YOR259C, YPL174C, YPL237W, YAL005C, YKL122C, YAL068C, YBR187W, YBR219C, YBR189W, YBR191W, YBR162C, YDL126C, YDL130W, YDR194C, YEL042W, YEL046C, YFR032C-A, YGL009C, YFR038W, YGR091W, YGR124W, YHR143W, YHR174W, YHR119W, YHR148W, YJL115W, YKL074C, YKL045W, YKL049C, YLR025W, YLR027C, YLR058C, YLR029C, YLR062C, YLR461W, YLR432W, YLR463C, YLR465C, YLR467W, YMR194W, YOR035C, YOR006C, YOR381W, YPL019C, YPL051W, YBR033W, YEL007W, YBL083C, YBR031W, YBL087C, YBR005W, YCR037C, YCR039C, YCR013C, YCL054W, YDR034C-D, YDR365W-B, YDR399W, YER173W, YER117W, YGL168W, YGR279C, YHL013C, YHL015W, YJR015W, YJR047C, YKR042W, YKR013W, YLR273C, YLR245C, YLR249W, YML117W, YMR015C, YMR046C, YOL011W, YOL014W, YOL046C, YOL016C, YOR192C-B, YOR194C, YOR226C, YKL123W, YAL003W, YAL038W, YBR155W, YBR220C, YDL061C, YGL040C, YGL012W, YGR155W, YGR157W, YHR142W, YHR179W, YJL080C, YJL114W, YJL052W, YJL116C, YJL086C, YKL048C, YLR061W, YLR431C, YLR405W, YMR191W, YOR068C, YPL014W, YPL048W, YOR380W, YPL020C, YPR138C, YBR126C, YDR050C, YDR351W, YBR092C, YDR158W, YDR500C, YFL039C, YFL045C, YGR005C, YHR081W, YHR025W, YIL176C, YIR034C, YJR143C, YKL012W, YJR145C, YJR147W, YJR118C, YKR105C, YLL064C, YLL034C, YLR340W, YLR372W, YMR137C, YOL106W, YOL138C, YOR287C, YPL268W, YPR018W, YPL272C, YPR052C, YAR070C, YBL027W, YBR287W, YDL192W, YDR276C, YDR312W, YDR341C, YDR314C, YER055C, YER056C-A, YGL103W, YGL135W, YGL077C, YGR214W, YHR208W, YIL018W, YIL020C, YIL052C, YJL177W, YKL172W, YKL143W, YLR182W, YLR157C-A, YML056C, YML058W-A, YMR316W, YNL301C, YNR026C, YPL142C, YPL146C, YHR183W, YBR063C, YBR093C, YBR065C, YDR098C-A, YDR461W, YDR525W, YDR463W, YFL010C, YFR002W, YFL013C, YGL263W, YGR034W, YHR021C, YHR082C, YHR026W, YKL017C, YLL061W, YLR304C, YLR367W, YLR339C, YMR136W, YNL110C, YOL103W-B, YOL076W, YOL141W, YPL265W, YPR045C, YBR252W, YCL020W, YDL191W, YDR309C, YER023W, YER025W, YER027C, YER057C, YER087C-A, YGL102C, YGL076C, YGR211W, YIL051C, YJL148W, YKL199C, YLR153C, YML022W, YML024W, YML026C, YML028W, YML058W, YMR285C, YNR025C, YNL302C, YOR096W, YPL079W, YPL111W, YPL143W, YPL081W, YPL145C, YBL093C, YCR021C, YDR012W, YDR072C, YDR380W, YER119C-A, YER123W, YGL177W, YIL124W, YJR024C, YJR026W, YJR028W, YJR094W-A, YLR227W-A, YLR257W, YLR287C-A, YMR050C, YML123C, YOL052C-A, YNR071C, YOR261C, YPL213W, YAR010C, YAR015W, YBR227C, YBR167C, YDL133C-A, YDR224C, YDR198C, YDR226W, YGR161C-C, YGR161W-A, YHR156C, YJL121C, YKL084W, YKL086W, YKL056C, YLR096W, YLR068W, YLR100W, YLR438C-A, YLR410W-B, YLR441C, YML006C, YMR230W, YMR173W, YMR202W, YNL217W, YNL284C-A, YOR009W, YOR385W, YPL055C, YOR389W, YBR037C, YBL092W, YBR041W, YBR012W-A, YCL064C, YER152C, YHL021C, YIL121W, YIL091C, YIL155C, YJR025C, YJR027W, YJR029W, YKR052C, YLR225C, YLR256W-A, YMR051C, YNL054W-A, YNR066C, YOL052C, YOR230W, YOR234C, YPL218W, YPL249C-A, YAL012W, YAR009C, YBR196C, YDL075W, YDR225W, YDR261C, YER003C, YFR041C, YGL016W, YGR159C, YGR129W, YGR161C, YGR102C, YGR161C-D, YGR161W-B, YKL081W, YLR035C-A, YLR037C, YLR101C, YLR438W, YLR410W-A, YNL216W, YNL220W, YOR078W, YPL054W, YPL024W, YPL026C, YPL028W, YPL060C-A, YDL041W, YCR087W, YDR134C, YDR502C, YDR476C, YFL020C, YFL022C, YGR037C, YGR067C, YGR009C, YGR038C-B, YGR013W, YHR065C, YJL026W, YIR009W, YJR151C, YKL024C, YLR003C, YLR344W, YLR314C, YLR378C, YLR380W, YOL086C, YOL118C, YOL150C, YOR293W, YOR355W, YPL276W, YPL278C, YPR028W, YCL030C, YDR290W, YER036C, YER063W, YGL111W, YGL115W, YGL147C, YGR254W, YGR192C, YHR214C-B, YHR215W, YJL191W, YKL180W, YKL182W, YLR128W, YLR162W, YLR194C, YLR134W, YPL088W, YPL090C, YFL014W, YFL031W, YBR071W, YBR105C, YCR087C-A, YDR167W, YDR170W-A, YDR471W, YDR473C, YFR010W, YGR008C, YGR038C-A, YHR060W, YHR090C, YHR092C, YIR004W, YJL027C, YJR150C, YJR123W, YKL023W, YLR379W, YLR349W, YMR142C, YMR083W, YNL118C, YOL147C, YOR292C, YOR298C-A, YPL273W, YPL275W, YAR071W, YAR075W, YBL002W, YBL032W, YBR290W, YBR296C, YDL229W, YDR316W-A, YDR289C, YGR251W, YGR257C, YIL053W, YHR214C-C, YIL057C, YHR216W, YJL158C, YJL190C, YML090W, YML063W, YNL308C, YNR003C, YBR048W, YBL103C, YBR052C, YCL067C, YDR418W, YDR450W, YER127W, YER131W, YGL189C, YGR294W, YHR010W, YHL032C, YIL132C, YJR070C, YKR087C, YKR057W, YKR059W, YLR259C, YLR293C, YLR264W, YNL065W, YNL036W, YNL067W, YNL069C, YOL002C, YOL064C, YOR205C, YOR237W, YPL189W, YPL221W, YPL193W, YPL257W-A, YAL025C, YBR177C, YDL082W, YDL084W, YDR261W-A, YDR210W, YEL026W, YGR109W-B, YHR132W-A, YHR196W, YJL101C, YKL060C, YKL062W, YKL125W, YKL096W, YKL127W, YLR040C, YLR104W, YLR074C, YLR044C, YLR076C, YLR110C, YLR447C, YMR208W, YMR242C, YNL227C, YPL037C, YEL054C, YBL098W, YBL101W-A, YDR447C, YDR417C, YER156C, YER128W, YER159C-A, YHR005C-A, YHL001W, YIL127C, YLR231C, YML126C, YML128C, YMR027W, YNL096C, YNL066W, YOL059W, YNR076W, YOR208W, YPL220W, YAR020C, YDL081C, YDL083C, YFR051C, YHR163W, YJL134W, YKL120W, YKL124W, YLR075W, YLR107W, YLR448W, YMR173W-A, YMR203W, YNL288W, YPL061W, YOR394W, YBR078W, YBR084C-A, YCR097W, YGR049W, YHR071W, YJL034W, YJL038C, YKL028W, YKL030W, YJR132W, YKL001C, YLL044W, YLR388W, YMR120C, YOL120C, YOR302W, YOR335C, YOR367W, YPR002W, YBL072C, YBL043W, YBL074C, YDR353W, YER043C, YER072W, YGL119W, YGL123W, YGR196C, YGR260W, YGR234W, YKL153W, YML045W-A, YPL132W, YBR145W, YDL014W, YCR096C, YDR174W, YDR176W, YDR542W, YDR481C, YFL023W, YFL056C, YFL027C, YGR074W, YGR044C, YGR078C, YHR066W, YHR068W, YJR158W, YKL029C, YJR133W, YLL045C, YLR383W, YLR355C, YLR325C, YLR357W, YMR116C, YMR119W-A, YMR121C, YMR152W, YNL160W, YNL162W, YOL119C, YOL151W, YOL121C, YOL155C, YOR360C, YOR303W, YOR304W, YPL281C, YPR002C-A, YBL005W-A, YBR266C, YCL031C, YDR321W, YDR354W, YDR297W, YDR326C, YER044C, YGR259C, YIL035C, YJL164C, YJL196C, YKL152C, YKL156W, YLR167W, YLR171W, YML040W, YML069W, YML073C, YMR303C, YPL131W, YER091C, YCR004C, YCR034W, YCR069W, YDR094W, YDR454C, YDR396W, YER138C, YGL225W, YGL258W, YHL009W-A, YIL134W, YJR104C, YJR074W, YJR108W, YKR065C, YLR301W, YMR006C, YNL073W, YOL037C, YOL039W, YOL041C, YOR277C, YOR215C, YOR247W, YPL197C, YPL229W, YPL199C, YPL260W, YAL060W, YAR053W, YBR215W, YBR247C, YBR249C, YEL034W, YGL031C, YGL001C, YGR113W, YGR148C, YGR176W, YGR119C, YGR178C, YHR136C, YHR141C, YJL137C, YJL079C, YKL070W, YKL072W, YKL135C, YLR048W, YLR112W, YLR086W, YML015C, YOR063W, YPL011C, YPL043W, YBR025C, YCR028C-A, YCR031C, YCR005C, YDR091C, YDR391C, YFL002W-B, YER165W, YFL004W, YER137C-A, YGL253W, YGL224C, YGL226C-A, YHL003C, YHL033C, YHR019C, YIL133C, YIL171W, YJR105W, YJR043C, YJR045C, YKR094C, YKR096W, YKR100C, YLR267W, YLR271W, YMR038C, YNL072W, YNL076W, YOL067C, YOL038W, YOL040C, YOR244W, YOR248W, YOR282W, YPL228W, YPL257W-B, YPL198W, YAR035W, YAL061W, YBR212W, YDL147W, YDR210W-A, YDR210W-C, YGL030W, YGL032C, YGR145W, YGR118W, YHR197W, YHR137W, YHR203C, YJL136C, YJL138C, YJL078C, YJL110C, YKL067W, YLR117C, YLR452C, YMR243C, YMR215W, YPL044C, YPR158W-B, YDL023C, YCR104W, YDR154C, YDR186C, YFL034C-A, YFR031C-A, YGR085C, YGR027C, YGR087C, YHR109W, YJL041W, YJL012C, YKL006W, YJR139C, YKL010C, YKL041W, YLL024C, YLR334C, YLR398C, YMR158C-B, YOL103W-A, YOR369C, YOR343C-B, YPR008W, YPR040W, YPR074C, YPR044C, YPR076W, YBL082C, YDR300C, YDR365W-A, YJR009C, YLR180W, YNL010W, YNL327W, YNR053C, YPL136W, YHR122W, YBR084W, YBR147W, YDL022W, YDR155C, YDR185C, YDR489W, YGR027W-A, YJL007C, YJL039C, YKL038W, YLL019C, YLR333C, YNL134C, YOL127W, YOL161C, YOR338W, YOR372C, YOR312C, YOR343C-A, YOR374W, YPR075C, YDR299W, YER073W, YER102W, YGR203W, YGR207C, YIL069C, YKL224C, YMR307W, YNR050C, YNR054C, YPL107W	AFT2, FHL1, SFP1	"A | 0.617 0.070 0.886 0.004 0.003 0.011 0.593 0.087 0.753 0.044 0.855 0.011 0.126 
C | 0.097 0.882 0.050 0.680 0.992 0.945 0.017 0.149 0.033 0.931 0.142 0.412 0.548 
G | 0.201 0.047 0.041 0.009 0.001 0.004 0.346 0.058 0.178 0.013 0.002 0.021 0.036 
T | 0.085 0.001 0.023 0.307 0.004 0.040 0.044 0.706 0.036 0.012 0.001 0.556 0.290 
"
RDR1	YOR380W	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	GCGGATA	0.02423792	9.05	10.3245	9.05	"Transcriptional repressor involved in the control of multidrug resistance; negatively regulates expression of the PDR5 gene; member of the Gal4p family of zinc cluster proteins
"	YBL050W, YBL051C, YBR120C, YBR156C, YCR099C, YCR100C, YDR365C, YDR365W-A, YDR365W-B, YDR367W, YDR440W, YDR461W, YGR215W, YGR220C, YGR222W, YGR263C, YGR265W, YHR068W, YHR120W, YJL012C, YJL166W, YKL088W, YKL123W, YKL124W, YKL162C, YKL201C, YLR242C, YLR243W, YLR440C, YMR135W-A, YMR177W, YMR209C, YMR210W, YNL010W, YNL011C, YNL021W, YNL022C, YNL145W, YNL164C, YNL290W, YNL291C, YOR215C, YOR378W, YPL052W, YPL053C, YPL267W	YML114C, YHR146W, YOR379C, YDR207C, YMR042W, YGR120C, YLR026C, YOR378W, YPL016W, YOR380W, YOL136C, YBR129C, YLL002W, YNL180C, YDR279W, YKL142W, YLR119W, YOR160W, YIL118W, YNL089C, YOR229W, YOR261C, YGR134W, YLR438C-A, YLR412W, YOR075W, YLR225C, YMR023C, YNL090W, YNR066C, YPL216W, YFR041C, YGR161C, YHR120W, YJL124C, YLR099C, YML007W, YMR145C, YNL155W, YOL149W, YNL065W, YLR416C, YNL289W, YOR051C, YPL066W, YLR292C, YNL100W, YDR209C, YDR177W, YKL001C, YOR367W, YNR045W, YOL155C, YJL196C, YER135C, YMR184W, YMR034C, YBR244W, YNL264C, YNL266W, YLR398C, YIL044C, YIL076W, YGR024C, YBR278W	NRG1, RSC3, STB1	"A | 0.020 0.010 0.010 0.010 0.810 0.340 0.790 
C | 0.100 0.970 0.010 0.010 0.020 0.010 0.070 
G | 0.810 0.010 0.970 0.970 0.160 0.020 0.110 
T | 0.070 0.010 0.010 0.010 0.010 0.630 0.030 
"
RDS1	YCR106W	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	TCGGCCGA	2.26683e-13	10.9	14.6945	11.82	"Zinc cluster transcription factor involved in conferring resistance to cycloheximide
"	YCL055W, YCL056C, YCR105W, YCR106W, YCR107W, YDR144C, YDR145W, YER138C, YGL157W, YGR004W, YGR175C, YGR176W, YGR225W, YKL118W, YKL177W, YKL179C, YLR083C, YLR433C, YLR434C, YMR103C, YMR125W, YMR126C, YMR257C, YMR259C, YNL188W, YNL258C, YPL070W, YPL071C, YPL073C, YPR158W-A, YPR158W-B	YOL047C, YDR216W, YDR190C, YDR222W, YGL045W, YGR152C, YHR180W, YJL051W, YKL049C, YMR220W, YNL271C, YBL083C, YBR029C, YBL085W, YBR001C, YCR041W, YCR015C, YCR043C, YDR003W, YDR005C, YDR065W, YDR369C, YDR401W, YDR433W, YDR371W, YDR403W, YDR435C, YER111C, YGL229C, YGL170C, YGL202W, YHL045W, YGR281W, YHL015W, YIL077C, YIL141W, YIL111W, YJR049C, YJR084W, YJR021C, YKR013W, YML113W, YOR254C, YDL127W, YFR033C, YPL014W, YCR106W, YMR103C, YGR250C, YML027W, YCR107W, YJL017W, YMR104C, YMR136W, YNL116W, YDR279W, YPR191W, YER042W, YCR021C, YDR074W, YOR267C, YPL247C, YDL076C, YKL051W, YER150W, YMR023C, YMR199W, YOR074C, YOR384W, YFR017C, YKL026C, YMR078C, YMR145C, YNL309W, YIR035C, YJR119C, YOR324C, YBR264C, YER064C, YPL087W, YGL183C, YGR292W, YOR273C, YGR138C, YNL289W, YNL035C, YAR018C, YGR139W, YDL048C, YDR177W, YNL159C, YNL160W, YGL154C, YBR054W, YER139C, YGL223C, YLR297W, YDL150W, YPR106W, YDR055W, YIL103W, YMR034C, YMR181C, YMR250W, YOR092W, YCL040W, YDR155C, YDR523C, YOL101C, YOL165C, YNR019W	HAP2, HAP4, OAF1, PHD1, STB1, SWI4	"A | 0.010 0.010 0.010 0.010 0.010 0.010 0.010 0.800 
C | 0.010 0.970 0.050 0.020 0.960 0.930 0.010 0.180 
G | 0.180 0.010 0.930 0.960 0.020 0.050 0.970 0.010 
T | 0.800 0.010 0.010 0.010 0.010 0.010 0.010 0.010 
"
RDS2	YPL133C	Zhao and Stormo	http://www.ncbi.nlm.nih.gov/pubmed/21654662	TCCGA	0.0002909346	4.51	7.2797	6.64	"Zinc cluster transcriptional activator involved in conferring resistance to ketoconazole
"	No Data	YCR040W, YGR280C, YKR012C, YOR225W, YDL131W, YFR032C-A, YGL009C, YHR143W, YMR194W, YPL049C, YBR031W, YGR279C, YKR042W, YKR013W, YMR044W, YOR226C, YDL061C, YHR143W-A, YJL052W, YOR382W, YHR053C, YHR025W, YIR034C, YLR374C, YMR071C, YNL147W, YNL149C, YOR347C, YOR351C, YPL187W, YHR208W, YOR159C, YBR091C, YDR461W, YHR021C, YJR117W, YLR339C, YNL110C, YNL146W, YBL026W, YCL012W, YCL018W, YDL191W, YDR281C, YIL015W, YLR185W, YML055W, YDR378C, YJR094W-A, YLR287C-A, YNL030W, YPL247C, YDL133C-A, YDL136W, YLR439W, YMR230W, YOR045W, YBR009C, YDR077W, YER154W, YNL027W, YAL012W, YDL075W, YEL021W, YGR037C, YLR348C, YOL144W, YOR293W, YOR357C, YKL209C, YKL178C, YMR260C, YBR105C, YDR475C, YLR343W, YLR349W, YMR081C, YNL150W, YOL143C, YIL027C, YKL177W, YDR086C, YER131W, YHR010W, YKR057W, YLR234W, YNL065W, YOR239W, YHR190W, YLR040C, YLR420W, YNL259C, YOR393W, YCL066W, YDR447C, YHR005C-A, YML126C, YOR210W, YDL081C, YKL120W, YLR041W, YLR043C, YOR020C, YOR084W, YCR097W, YFL026W, YHR072W-A, YKL030W, YLR388W, YOL126C, YPR062W, YDR322C-A, YGL089C, YGL121C, YGL093W, YBR145W, YKL029C, YNL162W, YPL281C, YDL239C, YJR004C, YKL216W, YKL156W, YNR044W, YNL322C, YDR056C, YLR303W, YOR247W, YAL033W, YER019C-A, YGL031C, YGR148C, YHR136C, YHR141C, YBR053C, YCR028C-A, YLR302C, YNL070W, YOR248W, YGL032C, YGR118W, YLR051C, YLR421C, YFL037W, YJR135W-A, YLR332W, YDL184C, YJR009C, YKL164C, YLR180W, YML108W, YDR485C, YBL018C, YGR209C, YML081C-A, YOR182C, YPL133C, YPR176C	GIS1, RGM1, STB4, STB5, USV1	"A | 0.052 0.024 0.001 0.001 0.689 
C | 0.438 0.904 0.982 0.014 0.107 
G | 0.054 0.051 0.016 0.953 0.079 
T | 0.456 0.021 0.001 0.032 0.125 
"
REB1	YBR049C, GRF2	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	GTTACCCGG	1.0127205e-160	8.74	12.9072	11.7	"RNA polymerase I enhancer binding protein; DNA binding protein which binds to genes transcribed by both RNA polymerase I and RNA polymerase II; required for termination of RNA polymerase I transcription
"	YAL030W, YAL031C, YBL013W, YBL014C, YBL036C, YBL058W, YBL059C-A, YBR163W, YBR164C, YBR165W, YBR179C, YBR180W, YBR222C, YBR224W, YBR225W, YBR236C, YBR237W, YCR032W, YCR094W, YDL007W, YDL045W-A, YDL137W, YDL140C, YDL186W, YDL188C, YDL212W, YDL213C, YDL225W, YDL226C, YDL232W, YDR154C, YDR155C, YDR156W, YDR157W, YDR158W, YDR219C, YDR221W, YDR257C, YDR282C, YDR313C, YDR322C-A, YDR323C, YDR370C, YDR371W, YDR372C, YDR373W, YDR465C, YDR466W, YDR498C, YDR499W, YEL004W, YEL005C, YEL012W, YEL022W, YEL023C, YEL027W, YER007C-A, YER013W, YER039C, YER040W, YER049W, YER070W, YER105C, YER106W, YER156C, YER157W, YFL005W, YFL023W, YFL024C, YFR050C, YGL068W, YGL070C, YGL088W, YGL089C, YGL119W, YGL120C, YGL151W, YGL152C, YGL181W, YGL182C, YGL191W, YGL193C, YGL198W, YGL200C, YGL238W, YGL244W, YGR012W, YGR078C, YGR079W, YGR134W, YGR135W, YGR147C, YGR172C, YGR173W, YGR179C, YGR184C, YGR191W, YGR231C, YGR232W, YGR235C, YGR241C, YGR243W, YHL030W, YHL031C, YHR039C-A, YHR040W, YHR170W, YIL014W, YIL022W, YIL023C, YIL075C, YIL108W, YIL109C, YIL112W, YIL125W, YIL148W, YIL149C, YIR002C, YIR003W, YJL001W, YJL002C, YJL003W, YJL004C, YJL148W, YJL158C, YJL194W, YJL196C, YJR085C, YJR086W, YJR087W, YJR090C, YJR098C, YJR099W, YJR100C, YJR127C, YJR137C, YJR138W, YKL051W, YKL052C, YKL058W, YKL059C, YKL072W, YKL077W, YKL081W, YKL082C, YKL104C, YKL121W, YKL122C, YKL142W, YKL145W, YKL146W, YKL147C, YKL148C, YKL202W, YKL203C, YKR015C, YKR016W, YKR068C, YKR069W, YKR076W, YLL040C, YLR083C, YLR114C, YLR115W, YLR170C, YLR223C, YLR224W, YLR275W, YLR308W, YLR367W, YLR378C, YLR380W, YML001W, YML119W, YML120C, YML124C, YML129C, YMR001C, YMR002W, YMR039C, YMR040W, YMR047C, YMR048W, YMR117C, YMR121C, YMR122W-A, YMR182C, YMR186W, YMR188C, YMR189W, YMR214W, YMR221C, YMR260C, YMR280C, YMR281W, YNL008C, YNL090W, YNL091W, YNL111C, YNL113W, YNL115C, YNL117W, YNL118C, YNL161W, YNL169C, YNL171C, YNL243W, YNL244C, YNL262W, YNL263C, YNL279W, YNL280C, YNL284C, YNL308C, YNR011C, YNR012W, YNR013C, YNR014W, YNR017W, YNR039C, YNR040W, YOL004W, YOL005C, YOL006C, YOR044W, YOR048C, YOR074C, YOR075W, YOR076C, YOR077W, YOR093C, YOR094W, YOR116C, YOR117W, YOR122C, YOR128C, YOR148C, YOR149C, YOR150W, YOR151C, YOR157C, YOR158W, YOR187W, YOR196C, YOR197W, YOR237W, YOR272W, YOR318C, YOR319W, YOR324C, YOR326W, YOR335C, YOR336W, YOR340C, YOR341W, YOR353C, YPL180W, YPL182C, YPL204W, YPL206C, YPL211W, YPL212C, YPR025C, YPR026W, YPR052C, YPR053C, YPR055W, YPR067W, YPR074C, YPR076W, YPR099C, YPR101W, YPR119W, YPR163C, YPR164W, YPR181C, YPR182W, YPR197C	YDR034C-C, YDR404C, YGR280C, YGR282C, YHL048W, YLR218C, YMR045C, YML117W-A, YMR046W-A, YOR192C-A, YOR193W, YDR194C, YGL009C, YHR119W, YKL049C, YLR058C, YBR031W, YBR005W, YCL054W, YDR034C-D, YGL168W, YIL147C, YJR047C, YKR072C, YKR042W, YMR046C, YOL014W, YOL046C, YOL016C, YOR192C-B, YPL240C, YAL003W, YAL036C, YDL097C, YGL012W, YGR122C-A, YHR142W, YHR179W, YJL116C, YJL086C, YPL048W, YPR138C, YDR158W, YFL010W-A, YHR025W, YIR034C, YJR147W, YLL034C, YMR105C, YOL106W, YOR347C, YOR289W, YDR337W, YGL105W, YHR208W, YIL018W, YLR157C-A, YMR316W, YHR183W, YDR098C-A, YDR525W, YFL010C, YHR026W, YJR146W, YLL061W, YLR339C, YOL103W-B, YOR344C, YER023W, YER052C, YER083C, YER057C, YGR211W, YGR243W, YIL051C, YKL199C, YML058W, YMR251W-A, YBR010W, YBR012C, YBR012W-B, YDR012W, YJR026W, YJR028W, YLR227W-A, YMR050C, YNL030W, YOL052C-A, YAR010C, YGR161C-C, YGR161W-A, YJL121C, YKL086W, YLR410W-B, YMR202W, YNL284C-A, YOR385W, YBR041W, YBR012W-A, YCL064C, YDR411C, YER150W, YHL021C, YIL117C, YJR027W, YJR029W, YLR256W-A, YMR051C, YNL054W-A, YNL057W, YOR230W, YOR202W, YPL218W, YAR009C, YGR161C-D, YGR161W-B, YLR035C-A, YLR410W-A, YOR078W, YPL028W, YDR168W, YDR502C, YFR015C, YIR042C, YLR344W, YLR380W, YOR323C, YPL274W, YHR215W, YJL217W, YJL159W, YJL191W, YLR162W, YLR194C, YFL014W, YDR170W-A, YGR038C-A, YHR030C, YHR060W, YJL027C, YJR150C, YDL229W, YDR316W-A, YER062C, YHR214C-C, YJL152W, YJL158C, YBR048W, YDR388W, YER131W, YIL094C, YJR032W, YKR087C, YPL223C, YPL193W, YPL257W-A, YDR261W-A, YGR109W-B, YLR414C, YOR049C, YBL101W-A, YER159C-A, YML126C, YML128C, YOL030W, YGR137W, YHR163W, YKL120W, YCR097W, YKL030W, YLL044W, YLR320W, YGR260W, YML045W-A, YDR176W, YGR074W, YIR043C, YLR355C, YNL160W, YPR002C-A, YBL005W-A, YDR354W, YER044C, YGR195W, YGR259C, YKL183W, YLR171W, YML040W, YML073C, YPL131W, YER091C, YBR054W, YER138C, YGL225W, YGL258W, YHL009W-A, YLR297W, YNL073W, YOL041C, YOR247W, YAR042W, YBR249C, YDR210W-D, YDR212W, YEL034W, YGL001C, YGR176W, YKL103C, YOR063W, YBR025C, YCR005C, YDR391C, YFL002W-B, YER137C-A, YGL253W, YGL224C, YGL226C-A, YHL033C, YHR015W, YHR019C, YJR105W, YJR043C, YJR075W, YMR038C, YNL072W, YOL040C, YOR248W, YOR280C, YPL257W-B, YPL198W, YDR210W-A, YDR210W-C, YFR055W, YOR056C, YPR158W-B, YMR158C-B, YOL103W-A, YOR343C-B, YPR074C, YDR365W-A, YKL161C, YBR084W, YCR103C, YGR027W-A, YOR343C-A, YER073W	ABF1, MBP1, STB3, SWI4, SWI6	"A | 0.300 0.010 0.010 0.970 0.010 0.010 0.010 0.010 0.150 
C | 0.100 0.010 0.010 0.010 0.970 0.970 0.970 0.010 0.150 
G | 0.500 0.010 0.010 0.010 0.010 0.010 0.010 0.590 0.550 
T | 0.100 0.970 0.970 0.010 0.010 0.010 0.010 0.390 0.150 
"
REI1	YBR267W	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	CCCCTGA		7.46	12.0536	9.95	"Cytoplasmic pre-60S factor; required for the correct recycling of shuttling factors Alb1, Arx1 and Tif6 at the end of the ribosomal large subunit biogenesis; involved in bud growth in the mitotic signaling network
"	No Data	No Data	None	"A | 0.010 0.050 0.010 0.010 0.010 0.010 0.560 
C | 0.930 0.930 0.970 0.970 0.010 0.010 0.080 
G | 0.010 0.010 0.010 0.010 0.010 0.930 0.230 
T | 0.050 0.010 0.010 0.010 0.970 0.050 0.130 
"
RFX1	YLR176C, CRT1	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	GTTGTCATGGCAAC	3.982871e-20	11.85	14.557	16.22	"Major transcriptional repressor of DNA-damage-regulated genes, recruits repressors Tup1p and Cyc8p to their promoters; involved in DNA damage and replication checkpoint pathway; similar to a family of mammalian DNA binding RFX1-4 proteins
"	YAL001C, YAL058W, YBR042C, YBR128C, YCL002C, YCL006C, YCL007C, YCL008C, YCL009C, YCL010C, YCR002C, YCR004C, YCR005C, YCR006C, YCR008W, YCR012W, YDL101C, YDL129W, YDL229W, YDR022C, YDR067C, YDR068W, YDR086C, YDR098C, YDR101C, YDR186C, YDR188W, YDR292C, YDR372C, YDR373W, YDR410C, YDR429C, YDR431W, YDR472W, YDR496C, YDR506C, YDR537C, YDR539W, YER022W, YER181C, YGL116W, YGR059W, YGR180C, YGR222W, YGR255C, YGR256W, YGR263C, YGR265W, YGR277C, YGR278W, YHL008C, YHR044C, YHR045W, YHR153C, YHR154W, YHR166C, YHR167W, YHR181W, YIL066C, YJL026W, YJL027C, YJL134W, YJL135W, YJL136C, YJL145W, YJR088C, YJR089W, YJR140C, YJR141W, YKL100C, YKL172W, YKR026C, YKR074W, YLR034C, YLR106C, YLR107W, YLR286C, YLR287C-A, YLR409C, YLR410W, YMR052W, YMR177W, YMR187C, YMR279C, YNL188W, YNL209W, YNL259C, YNL261W, YNL330C, YOR112W, YOR263C, YOR265W, YOR268C, YOR269W, YOR279C, YOR280C, YOR282W, YOR284W, YOR378W, YPL039W, YPL040C, YPL188W, YPL189W, YPL190C, YPL191C	YDR372C, YHL016C, YHR146W, YKL047W, YMR192W, YOR377W, YOR379C, YDR207C, YDL129W, YEL047C, YGL012W, YOR378W, YPL016W, YBR124W, YNL143C, YDL226C, YGR180C, YGR212W, YHR208W, YML058W-A, YML089C, YMR314W, YNR026C, YPL084W, YBR129C, YLL002W, YMR102C, YOR316C, YPR015C, YDR281C, YGR183C, YLR183C, YLR155C, YLR157C, YOR075W, YIL117C, YNR066C, YJR148W, YBR166C, YGR161C, YJL088W, YLR034C, YLR099C, YLR437C, YJL026W, YIR009W, YMR291W, YPL156C, YLR345W, YMR110C, YMR140W, YIL068C, YPL189W, YGL184C, YML130C, YEL060C, YJL134W, YKL120W, YMR177W, YKL030W, YKL003C, YIL066C, YOL151W, YOL155C, YIL061C, YKR032W, YGR146C, YGR117C, YHR136C, YDR033W, YDR423C, YMR034C, YOR280C, YHR135C, YNL230C, YPL075W, YBL051C, YLR176C, YML052W, YMR276W, YLR395C, YLR177W, YMR279C, YNL324W	None	"A | 0.025 0.050 0.114 0.086 0.001 0.050 0.886 0.037 0.262 0.012 0.114 0.755 0.875 0.102 
C | 0.074 0.001 0.108 0.063 0.414 0.810 0.075 0.037 0.001 0.026 0.459 0.001 0.025 0.634 
G | 0.875 0.001 0.050 0.801 0.073 0.001 0.038 0.100 0.648 0.887 0.112 0.144 0.050 0.075 
T | 0.026 0.948 0.728 0.050 0.512 0.139 0.001 0.826 0.089 0.075 0.315 0.100 0.050 0.189 
"
RGM1	YMR182C	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	CCCCGACACGAGC	7.76763e-07	11.21	19.6927	17.89	"Putative transcriptional repressor with proline-rich zinc fingers; overproduction impairs cell growth
"	YBL108W, YBL109W, YBL111C, YBL112C, YBL113C, YBR181C, YCL068C, YCR038C, YCR105W, YCR107W, YDL075W, YDL076C, YDL082W, YDL083C, YDL133W, YDL191W, YDR449C, YDR450W, YDR542W, YDR543C, YDR544C, YDR545W, YER074W, YER116C, YER117W, YFL062W, YGL189C, YGL260W, YGL261C, YGR148C, YGR149W, YGR295C, YGR296W, YHL045W, YHL046C, YHL048W, YHL049C, YHR021C, YHR021W-A, YHR036W, YHR091C, YHR141C, YHR142W, YIL018W, YIL128W, YIL129C, YIL133C, YIL148W, YIL149C, YIL174W, YIL175W, YIL177C, YIR040C, YIR041W, YJL189W, YJL190C, YJL225C, YJR044C, YJR161C, YKL001C, YLL027W, YLL064C, YLL065W, YLR047C, YLR048W, YLR185W, YLR373C, YLR375W, YLR447C, YLR448W, YLR461W, YLR462W, YLR463C, YLR464W, YLR465C, YLR466W, YLR467W, YML024W, YML025C, YML026C, YML132W, YML133C, YMR142C, YMR143W, YMR324C, YMR325W, YNL336W, YNL337W, YNL338W, YNL339C, YNR001C, YNR029C, YNR030W, YNR076W, YOL125W, YOL126C, YOR234C, YOR292C, YOR293W, YOR318C, YOR319W, YPL034W, YPL283C, YPR131C, YPR132W, YPR202W, YPR203W	YDR222W, YOL048C, YEL011W, YJL052W, YNL274C, YPL014W, YPL016W, YBR126C, YDR342C, YLR374C, YMR103C, YMR105C, YNL115C, YOL104C, YOL136C, YGR248W, YGR250C, YLR120C, YMR256C, YNL305C, YBR125C, YJL017W, YLR310C, YMR104C, YNL116W, YGR183C, YLR121C, YNL304W, YCR048W, YCR050C, YCR021C, YDR074W, YLR257W, YOR267C, YPL245W, YBR169C, YDL072C, YGL053W, YKL051W, YNL217W, YOR043W, YCR093W, YER150W, YER154W, YHL021C, YIL087C, YLR251W, YML118W, YML120C, YNR066C, YJR148W, YML100W, YBR230C, YFR015C, YFR017C, YLL038C, YMR084W, YMR145C, YDL234C, YER038C, YLR194C, YPL088W, YFL014W, YBR135W, YGR008C, YIR035C, YLL039C, YLR343W, YLR375W, YMR081C, YOR324C, YKL150W, YNR001C, YPL087W, YOR273C, YAR028W, YGR138C, YER187W, YER158C, YLR258W, YML128C, YMR008C, YAR027W, YBR208C, YGR139W, YKL120W, YDL048C, YLR009W, YOR361C, YBR139W, YLL012W, YNL160W, YNL192W, YOL119C, YER067W, YNL005C, YBR054W, YLR297W, YAR033W, YBR183W, YDL124W, YMR182C, YDR055W, YMR034C, YPL230W, YBR214W, YGR149W, YJL076W, YKL065C, YMR181C, YMR250W, YPL042C, YPL073C, YHR044C, YLL026W, YCL040W, YCL042W, YLR178C, YMR276W, YLR327C, YLR395C, YNL200C, YNL324W	GSM1, MIG1, MIG2, MIG3, NHP10, NRG1, RDS2, RPH1, RSC3, RSF2, SKN7, SOK2, STP1, SUT1, UGA3, YDR026C, YER184C	"A | 0.010 0.010 0.350 0.010 0.020 0.970 0.099 0.495 0.010 0.010 0.520 0.069 0.040 
C | 0.880 0.713 0.590 0.970 0.010 0.010 0.782 0.010 0.970 0.010 0.060 0.337 0.770 
G | 0.100 0.267 0.010 0.010 0.960 0.010 0.109 0.485 0.010 0.970 0.410 0.584 0.070 
T | 0.010 0.010 0.050 0.010 0.010 0.010 0.010 0.010 0.010 0.010 0.010 0.010 0.120 
"
RGT1	YKL038W	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	GTCGGAAAAA	5.077032e-06	10.89	15.8993	12.38	"Glucose-responsive transcription factor that regulates expression of several glucose transporter (HXT) genes in response to glucose; binds to promoters and acts both as a transcriptional activator and repressor
"	YBR001C, YDL063C, YDL189W, YDL190C, YER028C, YER029C, YER030W, YFR032C, YGL181W, YGL182C, YGL209W, YHR094C, YHR095W, YIL039W, YJL013C, YJL219W, YJL221C, YJR008W, YJR043C, YKL075C, YKL076C, YKL197C, YKR075C, YLL016W, YLR098C, YLR121C, YML051W, YNL247W, YNL248C, YOL156W, YOL157C, YOR167C, YOR168W, YOR170W, YOR232W, YPL130W, YPL172C	YCR040W, YGR280C, YJR020W, YOR225W, YGL009C, YBR031W, YCR013C, YGR279C, YKR038C, YKR042W, YKR013W, YMR044W, YOR226C, YHR142W, YHR143W-A, YLR089C, YPL048W, YCR073W-A, YFR005C, YHR025W, YIR034C, YLR340W, YLR372W, YOR351C, YPL187W, YGR180C, YHR208W, YML085C, YNL337W, YBR067C, YDR461W, YHR026W, YJR117W, YLR339C, YNL110C, YNL146W, YOL073C, YPR013C, YPR015C, YCL012W, YCL018W, YIL015W, YML055W, YNL300W, YLR287C-A, YFR044C, YLR439W, YNL279W, YER152C, YER154W, YIL153W, YJR148W, YAL012W, YAL014C, YER001W, YOR040W, YDR502C, YFL018C, YLR380W, YOL144W, YOL086C, YPL195W, YBL062W, YBR265W, YDL198C, YGR192C, YKL209C, YKL178C, YPL092W, YHR094C, YIR004W, YLR343W, YLR349W, YMR083W, YOL111C, YOL143C, YOR221C, YBL032W, YJL158C, YKL177W, YKR093W, YMR057C, YOR239W, YHR190W, YLR040C, YLR420W, YPL033C, YCL066W, YHR005C-A, YKR086W, YML126C, YOR210W, YAL022C, YKL120W, YLR041W, YOR084W, YPR125W, YCR097W, YFL026W, YHR072W-A, YOL156W, YOL126C, YPR066W, YGL089C, YBR145W, YFL023W, YGR080W, YOR366W, YJR004C, YKL216W, YNR044W, YNL322C, YPL163C, YGL225W, YHL004W, YHL009W-A, YIL170W, YLR303W, YOR245C, YOR247W, YOR249C, YPL229W, YPL262W, YKL201C, YAR053W, YEL038W, YGR172C, YGR176W, YLR453C, YML019W, YOR093C, YOR063W, YDR285W, YLR302C, YNL045W, YOR246C, YOR248W, YGL032C, YBR118W, YFL037W, YLR019W, YOR034C, YCL009C, YDL184C, YGR274C, YJR009C, YKL164C, YLR180W, YMR276W, YKL038W, YER073W	EDS1, GSM1, MIG1, MIG3, OAF1, PDR3, SUT1, YPR196W	"A | 0.001 0.001 0.001 0.001 0.001 0.997 0.748 0.915 0.997 0.997 
C | 0.416 0.417 0.915 0.001 0.001 0.001 0.001 0.001 0.001 0.001 
G | 0.582 0.083 0.001 0.997 0.997 0.001 0.001 0.001 0.001 0.001 
T | 0.001 0.500 0.083 0.001 0.001 0.001 0.250 0.083 0.001 0.001 
"
RIM101	YHL027W, RIM1	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	TGCCAAG	0.3428936	10.02	12.8425	10.02	"Transcriptional repressor involved in response to pH and in cell wall construction; required for alkaline pH-stimulated haploid invasive growth and sporulation; activated by proteolytic processing; similar to A. nidulans PacC
"	YAL016W, YAL064C-A, YAL065C, YAL067C, YAL068C, YBL059W, YBL068W, YBL070C, YBR201W, YBR298C, YBR299W, YCR018C-A, YCR019W, YDL044C, YDL099W, YDL100C, YDR089W, YDR164C, YDR165W, YDR236C, YDR237W, YDR279W, YDR282C, YDR284C, YDR285W, YDR342C, YDR366C, YDR368W, YDR372C, YDR373W, YDR378C, YDR379W, YDR473C, YER138C, YER183C, YFL011W, YFL041W, YFL042C, YFL043C, YFR023W, YFR037C, YFR038W, YFR039C, YFR040W, YFR044C, YFR045W, YGR066C, YGR088W, YGR126W, YGR184C, YHR086W, YHR087W, YHR132C, YHR138C, YJR154W, YKL071W, YKL177W, YKL179C, YLR012C, YLR013W, YLR105C, YLR114C, YLR115W, YLR308W, YLR453C, YLR454W, YML070W, YMR089C, YMR090W, YMR126C, YMR170C, YMR267W, YNL150W, YNL151C, YOL077W-A, YOL078W, YOL080C, YOL160W, YOR008C-A, YOR009W, YOR106W, YOR251C, YOR252W, YPL186C, YPL189W, YPL190C, YPL238C, YPR197C	YER145C, YHL016C, YJR085C, YLR214W, YLR216C, YOR225W, YPL176C, YGL009C, YGL045W, YHR143W, YJL053W, YKL043W, YLR056W, YMR220W, YOR039W, YOR377W, YPL017C, YOR381W, YPL021W, YHL047C, YNL049C, YNR056C, YNR060W, YOL014W, YOR192C, YOR226C, YPL175W, YPL177C, YPL240C, YBR157C, YGL038C, YGL012W, YHR175W, YHR147C, YJL118W, YKL104C, YKL044W, YLR433C, YMR189W, YNL270C, YNL208W, YNL210W, YNL274C, YOR066W, YOR038C, YPL016W, YOR382W, YDR351W, YDR100W, YGR063C, YHR057C, YMR137C, YOL104C, YOL136C, YOR285W, YOR317W, YPL135W, YAR064W, YER026C, YHR208W, YNL333W, YNR026C, YNR028W, YPL112C, YPL084W, YBR067C, YBR129C, YGR060W, YGR064W, YIR033W, YJR113C, YLR304C, YMR136W, YNL180C, YOL109W, YBR288C, YDR309C, YDR281C, YER056C, YER057C, YIL015W, YLR183C, YMR316C-B, YPL141C, YCR046C, YHR005C, YIL088C, YIL156W, YML123C, YNL028W, YNL058C, YNR067C, YOL052C-A, YOR261C, YPL183W-A, YAL044C, YGR130C, YKL084W, YMR173W, YOR043W, YOR075W, YOR045W, YOR079C, YOR389W, YPL160W, YCR049C, YHR004C, YIL117C, YIL121W, YNL057W, YNL029C, YPL246C, YJR148W, YER001W, YGL046W, YLR438W, YMR171C, YDR533C, YLL009C, YLR346C, YLR348C, YNL125C, YOL144W, YOL118C, YPL278C, YPL280W, YPR060C, YHR214W, YML034W, YMR322C, YNR037C, YPL088W, YPL122C, YPL156C, YBR101C, YLR345W, YLR349W, YMR110C, YNL184C, YOL143C, YPL273W, YPL277C, YCL025C, YCL027W, YBR296C, YHR214W-A, YMR317W, YMR319C, YMR321C, YNR036C, YPL091W, YER060W, YKR093W, YMR055C, YML131W, YNR075W, YOL031C, YPL252C, YPL256C, YBR207W, YBR177C, YDR210W, YDR266C, YEL058W, YGR136W, YKL096W, YLR420W, YHL027W, YIL157C, YMR058W, YNL064C, YNL037C, YOL030W, YOR238W, YPL251W, YDR209C, YEL059C-A, YEL060C, YGL028C, YGR137W, YHR193C, YKL120W, YMR173W-A, YFL059W, YGR019W, YLR356W, YOL152W, YOL122C, YOL158C, YPR004C, YOR383C, YGR234W, YLR136C, YMR272C, YMR304C-A, YPL098C, YBR083W, YDR174W, YDR115W, YFL027C, YOL155C, YPR061C, YDL241W, YGR261C, YIL029C, YJL196C, YKL216W, YMR297W, YNR044W, YDR032C, YHL004W, YHR018C, YHL040C, YKR065C, YKR097W, YMR006C, YPL229W, YAL062W, YBR183W, YBR185C, YDR270W, YEL065W, YEL040W, YGR144W, YGR117C, YJL143W, YLR050C, YMR186W, YOR027W, YPL072W, YCR005C, YDR453C, YGL255W, YJR075W, YLR237W, YMR034C, YNL070W, YPL259C, YPL234C, YBR244W, YBR182C, YGL032C, YGR143W, YJL076W, YLR049C, YLR113W, YLR421C, YLR452C, YLR427W, YMR211W, YMR243C, YMR246W, YNL264C, YOR090C, YPL075W, YGR057C, YKL035W, YLL052C, YOR375C, YIL070C, YKL192C, YMR305C, YNR055C, YPL172C, YDL022W, YGR086C, YLL053C, YOL101C, YOR306C, YER073W, YGR235C, YJL200C, YML049C, YNR017W, YPL169C	None	"A | 0.012 0.012 0.012 0.012 0.964 0.964 0.012 
C | 0.012 0.012 0.964 0.964 0.012 0.012 0.012 
G | 0.012 0.964 0.012 0.012 0.012 0.012 0.964 
T | 0.964 0.012 0.012 0.012 0.012 0.012 0.012 
"
RLM1	YPL089C	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	TCTATAAATAG	1.020023e-15	7.35	11.2717	10.89	"MADS-box transcription factor, component of the protein kinase C-mediated MAP kinase pathway involved in the maintenance of cell integrity; phosphorylated and activated by the MAP-kinase Slt2p
"	YBL001C, YBR057C, YBR156C, YBR158W, YBR159W, YCL019W, YCL020W, YCL022C, YCL023C, YCR018C-A, YCR019W, YCR024C, YDL037C, YDL044C, YDL245C, YDL246C, YDL247W, YDR042C, YDR054C, YDR055W, YDR072C, YDR073W, YDR077W, YDR085C, YDR210W-D, YDR279W, YDR283C, YDR309C, YDR372C, YDR373W, YDR417C, YDR419W, YDR420W, YDR524C, YDR525W, YDR526C, YEL001C, YEL040W, YEL050C, YEL070W, YER001W, YER111C, YER112W, YER130C, YER131W, YER138C, YFR001W, YGL009C, YGL158W, YGL195W, YGL259W, YGR107W, YGR189C, YGR191W, YGR218W, YHL027W, YHL034C, YHL041W, YHR143W, YHR143W-A, YHR193C, YHR194W, YIL040W, YIL119C, YIL122W, YJL104W, YJL106W, YJL107C, YJL108C, YJL148W, YJL158C, YJL159W, YJR158W, YJR159W, YKL039W, YKL040C, YKL072W, YKL096W, YKL161C, YKL163W, YKL177W, YKL179C, YKR091W, YKR102W, YKR103W, YLL027W, YLR035C-A, YLR105C, YLR110C, YLR111W, YLR154C, YLR300W, YLR332W, YLR342W, YLR354C, YLR368W, YLR390W-A, YLR413W, YLR463C, YLR465C, YLR467W, YML055W, YML056C, YML124C, YMR013C, YMR014W, YMR049C, YNL066W, YNR050C, YOL159C, YOL160W, YOR058C, YOR108W, YOR236W, YOR268C, YOR269W, YOR315W, YOR355W, YPR195C, YPR197C	YNL276C, YFR006W, YOR290C, YPL089C, YLR155C, YLR157C, YEL023C, YLR099C, YLR101C, YBL031W, YLR158C, YLR160C, YJR152W, YLR258W, YLR294C, YOL122C, YDR174W, YLR112W, YDR395W, YKR062W	None	"A | 0.090 0.021 0.012 0.905 0.368 0.545 0.574 0.728 0.025 0.952 0.051 
C | 0.055 0.935 0.029 0.028 0.024 0.024 0.018 0.011 0.015 0.012 0.034 
G | 0.138 0.028 0.012 0.017 0.012 0.015 0.011 0.011 0.011 0.024 0.863 
T | 0.718 0.015 0.948 0.050 0.595 0.417 0.396 0.249 0.949 0.012 0.051 
"
RME1	YGR044C, CSP1	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	TTTAAAGGAA	8.419092e-08	6.67	8.7441	9.56	"Zinc finger protein involved in control of meiosis; prevents meiosis by repressing IME1 expression and promotes mitosis by activating CLN2 expression; directly repressed by a1-alpha2 regulator; mediates cell type control of sporulation
"	YAL004W, YBL001C, YBL002W, YBL003C, YBL025W, YBL074C, YBR216C, YBR217W, YDL130W, YDL184C, YDR042C, YDR048C, YDR210W-D, YDR526C, YEL012W, YER078C, YER079W, YER177W, YER189W, YER190W, YFL034W, YFR017C, YGL050W, YGL134W, YGL135W, YGL136C, YGL190C, YGL234W, YGL236C, YGR030C, YGR031W, YGR060W, YGR109C, YGR109W-A, YGR109W-B, YGR256W, YHL034C, YHR143W, YIL014W, YIL015C-A, YIL050W, YIL051C, YIL052C, YIL158W, YIL161W, YIL169C, YJL045W, YJL148W, YJL188C, YJL189W, YJL190C, YJL191W, YJL192C, YJR100C, YKL042W, YKL118W, YKL132C, YKR062W, YLL063C, YLR027C, YLR029C, YLR030W, YLR061W, YLR065C, YLR066W, YLR074C, YLR075W, YLR105C, YLR367W, YLR368W, YLR369W, YLR439W, YML055W, YML056C, YML100W, YML101C, YML102C-A, YML125C, YML131W, YMR013C, YMR014W, YMR052C-A, YMR053C, YMR054W, YMR144W, YMR165C, YMR261C, YMR262W, YNL032W, YNL034W, YNL250W, YNL251C, YNR018W, YNR044W, YOL154W, YOR042W, YOR138C, YOR140W, YOR236W, YOR369C, YPL090C, YPL130W, YPL141C, YPL143W, YPL198W, YPR109W, YPR161C	YLR216C, YOR037W, YAR068W, YMR314W, YBR093C, YBR097W, YBR129C, YIL124W, YNL281W, YGL180W, YMR017W, YER001W, YOR074C, YOL150C, YOR298W, YHR214W, YOR298C-A, YBR296C, YHR214W-A, YOR136W, YKR028W, YPL256C, YGL055W, YKR086W, YLR294C, YDR209C, YBR079C, YGR044C, YOL151W, YOL155C, YOR027W, YGL255W, YIL169C, YLR269C, YBR244W, YMR306W, YNL200C, YNL007C, YPR176C	None	"A | 0.001 0.121 0.119 0.989 0.743 0.860 0.187 0.227 0.580 0.790 
C | 0.180 0.324 0.338 0.001 0.001 0.107 0.001 0.001 0.141 0.002 
G | 0.003 0.120 0.171 0.009 0.100 0.001 0.811 0.763 0.126 0.075 
T | 0.816 0.436 0.371 0.001 0.156 0.032 0.001 0.009 0.153 0.133 
"
ROX1	YPR065W, REO1	Fordyce et. al.	http://www.ncbi.nlm.nih.gov/pubmed/20802496	ACAATAGC	0.0011374857	4.5	7.57244	7.81	"Heme-dependent repressor of hypoxic genes; contains an HMG domain that is responsible for DNA bending activity
"	YAL033W, YAL034C, YAR009C, YAR023C, YAR068W, YBL029W, YBL074C, YBL098W, YBL099W, YBL100C, YBR230C, YCR024C, YCR063W, YCR064C, YCR065W, YCR073C, YDL024C, YDL045W-A, YDL060W, YDL061C, YDL147W, YDL148C, YDL184C, YDL245C, YDL246C, YDR023W, YDR042C, YDR064W, YDR077W, YDR085C, YDR151C, YDR152W, YDR259C, YDR278C, YDR306C, YDR339C, YDR340W, YDR343C, YDR362C, YDR363W, YDR372C, YDR373W, YDR441C, YDR442W, YDR470C, YDR471W, YDR472W, YDR524C, YDR525W, YEL040W, YEL047C, YEL055C, YEL059W, YEL060C, YEL070W, YER007C-A, YER011W, YER045C, YER056C-A, YER074W, YER075C, YER097W, YER098W, YER101C, YER102W, YER137C, YER158C, YFL039C, YFR016C, YFR039C, YFR040W, YGL005C, YGL012W, YGL013C, YGL029W, YGL123W, YGL124C, YGL134W, YGL135W, YGL136C, YGL195W, YGL234W, YGL236C, YGR027C, YGR084C, YGR124W, YGR190C, YGR221C, YGR256W, YHL034C, YHR185C, YHR193C, YHR194W, YIL014W, YIL015C-A, YIL056W, YIL099W, YIL102C, YIL119C, YIL135C, YIR020C, YJL039C, YJL045W, YJL048C, YJL105W, YJL148W, YJL219W, YJL221C, YJR094C, YJR100C, YJR158W, YJR159W, YKL044W, YKL057C, YKL127W, YKR073C, YKR102W, YLL027W, YLR034C, YLR035C-A, YLR043C, YLR074C, YLR075W, YLR105C, YLR255C, YLR256W, YLR256W-A, YLR328W, YLR354C, YLR368W, YLR406C, YLR407W, YML055W, YML056C, YML071C, YML102W, YML103C, YML124C, YMR014W, YMR017W, YMR135C, YMR136W, YMR193C-A, YMR319C, YNL034W, YNL097C, YNL111C, YNL288W, YNR050C, YOL026C, YOL121C, YOL155C, YOL156W, YOL157C, YOR042W, YOR223W, YOR236W, YOR272W, YOR277C, YOR278W, YOR315W, YPL018W, YPL019C, YPL130W, YPL143W, YPL198W, YPL220W, YPL230W, YPR010C, YPR013C, YPR109W, YPR160W	YBL113C, YDR038C, YER145C, YJR048W, YOR225W, YDR222W, YCL051W, YDR371W, YIL111W, YJR047C, YOR226C, YPL240C, YDR039C, YEL047C, YHR179W, YPL016W, YER011W, YMR135W-A, YNL111C, YPL283C, YGR180C, YML058W-A, YMR252C, YNL339C, YBR067C, YCR077C, YDL034W, YFR006W, YGR060W, YKR106W, YLR337C, YPR015C, YGR213C, YDR044W, YGL177W, YHL050C, YML121W, YOR229W, YER002W, YGL053W, YJR148W, YOR010C, YJL026W, YLR348C, YBR291C, YMR320W, YJR150C, YLR349W, YPR065W, YMR319C, YMR263W, YJR070C, YAR028W, YNL261W, YMR058W, YNL094W, YDR116C, YGR049W, YOL096C, YOR333C, YHR219W, YIL066C, YLR142W, YMR272C, YGR018C, YDR297W, YER044C, YGL164C, YGL197W, YLR297W, YMR037C, YEL065W, YGL001C, YHR136C, YMR186W, YPL041C, YPR159W, YGL255W, YJR071W, YNL104C, YAR031W, YBR244W, YGR175C, YHR137W, YNL264C, YDR040C, YBR085W, YHR048W, YKL008C, YOR034C, YIL011W, YNR018W, YDL053C, YFL068W, YGR050C, YOR306C	None	"A | 0.950 0.010 0.950 0.960 0.110 0.556 0.260 0.253 
C | 0.010 0.880 0.020 0.010 0.010 0.101 0.280 0.333 
G | 0.010 0.060 0.010 0.010 0.010 0.222 0.390 0.283 
T | 0.030 0.050 0.020 0.020 0.870 0.121 0.070 0.131 
"
RPH1	YER169W, KDM4	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	CACCCCTGA	1.3918012e-08	6.65	8.31537	9.76	"JmjC domain-containing histone demethylase which can specifically demethylate H3K36 tri- and dimethyl modification states; transcriptional repressor of PHR1; Rph1p phosphorylation during DNA damage is under control of the MEC1-RAD53 pathway
"	YBL022C, YBL072C, YBR033W, YBR036C, YBR056W, YBR126C, YCL057W, YCL058C, YCL074W, YDL120W, YDL121C, YDL191W, YDR098C, YDR428C, YDR449C, YDR450W, YFR009W, YHR136C, YHR137W, YKR062W, YLR336C, YLR338W, YOL026C, YOL121C	YBR006W, YJR016C, YLR274W, YLR218C, YLR248W, YGL009C, YHR113W, YHR146W, YKL043W, YLR060W, YOR377W, YDR207C, YKR076W, YMR040W, YOL048C, YPL206C, YPL240C, YAL008W, YOR038C, YPL016W, YPR138C, YLR309C, YMR071C, YNL115C, YNL149C, YOR285W, YOR317W, YOR291W, YER028C, YER058W, YGR244C, YLR156W, YNL333W, YNL305C, YBR093C, YBR129C, YGR062C, YHR024C, YLR304C, YOL073C, YOL076W, YOL105C, YPR047W, YBL024W, YBR288C, YDR281C, YDR313C, YER057C, YGR211W, YLR155C, YLR157C, YNL332W, YNL306W, YIL156W, YML121W, YAL043C, YMR173W, YPL059W, YPL160W, YER119C, YIL085C, YNR066C, YOR228C, YOR260W, YOR198C, YPL246C, YAR002W, YBR166C, YGR131W, YKL087C, YLR099C, YMR171C, YNL214W, YPL054W, YIR036C, YLL009C, YLR346C, YDR347W, YHR215W, YKL149C, YPL122C, YPL154C, YBR101C, YBR105C, YDL040C, YGR012W, YIR037W, YIR010W, YJR156C, YLL041C, YMR083W, YNL184C, YOL083W, YOR292C, YBL065W, YBR264C, YER062C, YGL112C, YLR159W, YLR161W, YMR317W, YMR321C, YNR034W, YNR038W, YPL091W, YPL123C, YCR061W, YNL065W, YOR209C, YDR345C, YAL023C, YBR241C, YJL067W, YKL058W, YLR290C, YML130C, YNL037C, YAL049C, YJL066C, YJL068C, YKL120W, YPL032C, YDL021W, YFL059W, YGR019W, YLR324W, YLR356W, YOR383C, YGR232W, YLR136C, YPL132W, YDR115W, YNL160W, YOR330C, YPR067W, YER044C, YGR261C, YGR231C, YHL004W, YHR016C, YJR044C, YKR065C, YLR297W, YOR215C, YOR217W, YBR185C, YJL143W, YKL066W, YKL103C, YMR182C, YMR186W, YNL269W, YPR159W, YBR053C, YMR034C, YOL071W, YAL030W, YBR244W, YDR211W, YGL032C, YGR149W, YHR135C, YHR137W, YHR140W, YHR171W, YLR047C, YLR115W, YMR181C, YPL075W, YPR038W, YGR270W, YIL070C, YKL192C, YLR174W, YML110C, YPL172C, YMR157C, YNL200C, YOR306C, YPR037C, YJL200C, YKR001C, YLR173W, YNL007C, YMR307W, YNR017W	GIS1, MIG1, MIG3, MSN2, MSN4, RGM1, RSF2, SUT1, USV1, YER184C	"A | 0.206 0.710 0.010 0.408 0.010 0.245 0.032 0.399 0.459 
C | 0.504 0.086 0.961 0.550 0.953 0.592 0.236 0.010 0.328 
G | 0.105 0.086 0.010 0.032 0.028 0.136 0.010 0.424 0.044 
T | 0.184 0.119 0.019 0.010 0.010 0.027 0.722 0.167 0.170 
"
RPN4	YDL020C, UFD5, SON1	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	GGTGGCAAA	7.221075e-84	9.96	13.5519	11.76	"Transcription factor that stimulates expression of proteasome genes; Rpn4p levels are in turn regulated by the 26S proteasome in a negative feedback control mechanism; RPN4 is transcriptionally regulated by various stress responses
"	YAL001C, YAL003W, YAL005C, YAR007C, YAR008W, YAR009C, YBL001C, YBL087C, YBL109W, YBL111C, YBL112C, YBL113C, YBR008C, YBR065C, YBR109C, YBR110W, YBR128C, YBR143C, YBR164C, YBR165W, YBR185C, YBR186W, YBR188C, YBR189W, YCL002C, YCL006C, YCL007C, YCL008C, YCL009C, YCL010C, YCR002C, YCR004C, YCR005C, YCR006C, YCR008W, YCR012W, YCR023C, YCR099C, YCR100C, YCR105W, YDL101C, YDL108W, YDL109C, YDL114W, YDL115C, YDR064W, YDR066C, YDR071C, YDR117C, YDR118W, YDR149C, YDR151C, YDR152W, YDR394W, YDR426C, YDR427W, YDR461W, YDR523C, YDR526C, YDR543C, YDR544C, YDR545W, YEL003W, YEL022W, YEL023C, YER021W, YFL023W, YFL024C, YFL049W, YFL050C, YGL115W, YGL156W, YGL159W, YGL178W, YGL195W, YGR004W, YGR047C, YGR048W, YGR066C, YGR221C, YGR263C, YGR265W, YGR289C, YHR067W, YHR068W, YHR084W, YHR091C, YHR123W, YHR129C, YIL075C, YIL085C, YIL086C, YIL087C, YIL150C, YJL012C, YJL037W, YJL038C, YJL094C, YJL155C, YJR098C, YJR099W, YJR132W, YJR154W, YKL009W, YKL010C, YKL026C, YKL049C, YKL123W, YKL124W, YKL161C, YKL177W, YKL179C, YKR060W, YKR073C, YLL035W, YLL036C, YLL038C, YLL065W, YLR035C-A, YLR166C, YLR167W, YLR261C, YLR262C, YLR273C, YLR274W, YLR286C, YLR345W, YLR368W, YLR412W, YLR440C, YMR060C, YMR061W, YMR091C, YMR131C, YMR149W, YMR150C, YMR151W, YMR152W, YMR186W, YMR229C, YMR230W, YMR239C, YMR320W, YNL083W, YNL084C, YNL087W, YNL111C, YNL145W, YNL164C, YNL337W, YNL338W, YNL339C, YNR011C, YNR012W, YOL077W-A, YOL078W, YOL080C, YOR020C, YOR043W, YOR058C, YOR089C, YOR128C, YOR215C, YOR236W, YOR239W, YOR240W, YOR251C, YOR252W, YOR318C, YOR319W, YOR353C, YPL257W, YPL257W-A, YPL257W-B, YPR109W, YPR161C	YBR006W, YDR370C, YKR012C, YOR259C, YAL005C, YDL126C, YDL100C, YDR222W, YGL009C, YGL011C, YGL013C, YKL043W, YNL241C, YPL019C, YER142C, YNL047C, YNL078W, YOL011W, YPL177C, YDL097C, YJL082W, YOR007C, YPL014W, YPL016W, YBR092C, YCR082W, YFR003C, YFR005C, YGR031W, YHR053C, YHR055C, YHR027C, YLR374C, YMR103C, YDR280W, YGR244C, YGR250C, YKL139W, YMR314W, YBR067C, YBR129C, YDR461W, YFR004W, YFR006W, YFL044C, YJL017W, YKL015W, YLL061W, YLL002W, YMR104C, YNL146W, YBL058W, YDR281C, YER056C, YER029C, YIL015W, YJL144W, YMR315W, YER042W, YCL057W, YCR021C, YHR005C, YML123C, YML125C, YNL089C, YOR229W, YOR261C, YOR267C, YBR231C, YBR169C, YER004W, YFR040W, YFR044C, YKL051W, YKL117W, YLR412W, YCL056C, YDR011W, YDR077W, YIL117C, YNL090W, YJR148W, YGL048C, YGR127W, YDL007W, YGR007W, YJL026W, YLR348C, YLR350W, YNL155W, YOL150C, YOR355W, YER038C, YGR252W, YHR215W, YKL145W, YOR107W, YPL092W, YFL014W, YJL163C, YBR069C, YCR083W, YFR010W, YGR008C, YHR094C, YIR035C, YLR375W, YLR349W, YAR071W, YCL027W, YBR296C, YER064C, YGR253C, YJL158C, YKL210W, YKL150W, YML032C, YML092C, YNR038W, YER060W, YGL062W, YHL026C, YKR093W, YML131W, YBR173C, YBR175W, YDL144C, YFR050C, YFR052W, YGR138C, YLR040C, YMR236W, YER158C, YER130C, YML128C, YMR008C, YBR174C, YGR135W, YGR139W, YKL120W, YLR041W, YLR073C, YLR413W, YPL061W, YDL048C, YFL026W, YHR037W, YKL033W-A, YNL191W, YOL152W, YOL122C, YOL126C, YOL158C, YBL041W, YCL038C, YBR141C, YBR083W, YDR172W, YFL027C, YFR022W, YGR048W, YIR043C, YJL001W, YIR018W, YLR387C, YMR148W, YNL160W, YOL151W, YOL155C, YOR362C, YBL042C, YDL241W, YDR297W, YER094C, YKL216W, YNR044W, YBR054W, YDR394W, YIL170W, YLR297W, YMR002W, YMR067C, YNL046W, YDL124W, YGR117C, YHR136C, YHR200W, YJL079C, YKL070W, YMR182C, YER012W, YDR055W, YDR033W, YDR427W, YFL004W, YGL255W, YMR062C, YMR034C, YMR007W, YNL045W, YOL038W, YPL230W, YDL147W, YEL037C, YER021W, YGL032C, YLR049C, YLR452C, YMR181C, YOR307C, YKL196C, YMR276W, YBR089W, YGR052W, YHR047C, YMR127C, YOR306C, YOR338W, YIL075C, YML048W, YML109W	ABF1, MET31, SUT1, YDR026C	"A | 0.214 0.009 0.030 0.010 0.009 0.014 0.683 0.909 0.699 
C | 0.007 0.013 0.026 0.017 0.012 0.974 0.013 0.007 0.133 
G | 0.728 0.960 0.025 0.966 0.971 0.007 0.284 0.007 0.060 
T | 0.051 0.018 0.919 0.007 0.009 0.005 0.021 0.077 0.109 
"
RSC3	YDR303C	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	CGCGC		7.73	9.10995	7.78	"Component of the RSC chromatin remodeling complex; essential gene required for maintenance of proper ploidy and regulation of ribosomal protein genes and the cell wall/stress response; highly similar to Rsc30p
"	No Data	No Data	CAT8, GCN4, GIS1, GSM1, HAP2, HAP4, IME1, MSN4, NHP10, NRG1, PDR1, RDR1, RGM1, RTG3, SKN7, STP1, SUT1, UME6, USV1, YER184C	"A | 0.010 0.010 0.010 0.010 0.060 
C | 0.900 0.010 0.970 0.010 0.560 
G | 0.050 0.970 0.010 0.970 0.180 
T | 0.040 0.010 0.010 0.010 0.200 
"
RSC30	YHR056C	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	GCGCGCG		7.73	11.838	10.31	"Component of the RSC chromatin remodeling complex; non-essential gene required for regulation of ribosomal protein genes and the cell wall/stress response; highly similar to Rsc3p; null mutants are osmosensitive
"	No Data	No Data	IME1, PDR1, STP1, UME6	"A | 0.150 0.010 0.010 0.010 0.010 0.010 0.010 
C | 0.380 0.900 0.080 0.900 0.010 0.830 0.300 
G | 0.460 0.080 0.900 0.080 0.970 0.150 0.680 
T | 0.010 0.010 0.010 0.010 0.010 0.010 0.010 
"
RSF2	YJR127C, ZMS1	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	CCCCGCA	0.2544694	8.2	11.0257	9.8	"Zinc-finger protein involved in transcriptional control of both nuclear and mitochondrial genes, many of which specify products required for glycerol-based growth, respiration, and other functions
"	No Data	No Data	AFT1, AFT2, ARG80, CAT8, GIS1, HAP1, HMS1, MIG1, MIG3, MSN2, MSN4, NRG1, PDR1, RGM1, RPH1, STP1, STP2, SUT1, UME6, USV1, YER130C	"A | 0.010 0.010 0.010 0.010 0.190 0.050 0.500 
C | 0.970 0.970 0.970 0.970 0.040 0.850 0.100 
G | 0.010 0.010 0.010 0.010 0.530 0.050 0.100 
T | 0.010 0.010 0.010 0.010 0.240 0.050 0.300 
"
RTG1	YOL067C	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	GATCGTATGATA	0.00022346226	11.05	13.9653	13.5	"Transcription factor (bHLH) involved in interorganelle communication between mitochondria, peroxisomes, and nucleus
"	YAL028W, YAL029C, YBL097W, YBR245C, YBR275C, YCR018C-A, YCR019W, YDL073W, YDL074C, YDL247W, YDR045C, YDR179C, YDR179W-A, YDR193W, YDR284C, YDR285W, YDR298C, YDR299W, YDR394W, YDR440W, YDR473C, YER049W, YER057C, YER058W, YER139C, YER140W, YER142C, YER143W, YGL001C, YGL133W, YGL207W, YGL258W, YGR098C, YGR099W, YGR112W, YGR167W, YGR289C, YHL008C, YHR028C, YHR176W, YIL156W, YIL157C, YJL037W, YJL038C, YJR030C, YJR051W, YJR098C, YJR099W, YJR100C, YKL071W, YKL085W, YKL162C, YKR098C, YKR099W, YLR353W, YLR363C, YLR364W, YML094W, YML095C, YMR089C, YMR090W, YMR098C, YMR125W, YMR126C, YMR178W, YMR257C, YNL188W, YNL303W, YNL304W, YNL305C, YNL323W, YNL325C, YPL014W, YPL015C, YPL251W, YPL253C	YKL043W, YLR432W, YPL240C, YOR038C, YPL016W, YHR057C, YDL188C, YER028C, YOR165W, YBR093C, YDR461W, YDR467C, YDR281C, YOR043W, YCR045C, YGR131W, YIR036C, YDL196W, YHR215W, YBR105C, YDR169C, YFL016C, YAR071W, YAR075W, YHR216W, YNL064C, YJL068C, YBL007C, YBR146W, YDR543C, YFL026W, YFR021W, YGR077C, YGR019W, YKL033W-A, YLR354C, YOL120C, YDL049C, YJL160C, YHR202W, YOR027W, YMR034C, YOL065C, YOL067C, YGL032C, YJL076W, YPL075W, YLR023C, YNL141W, YLR146C, YOL101C, YOR306C, YJL200C, YNL007C	None	"A | 0.010 0.890 0.010 0.010 0.300 0.119 0.890 0.040 0.010 0.717 0.030 0.911 
C | 0.140 0.010 0.040 0.733 0.010 0.020 0.070 0.010 0.158 0.091 0.010 0.010 
G | 0.840 0.040 0.010 0.248 0.680 0.257 0.030 0.010 0.822 0.152 0.080 0.010 
T | 0.010 0.060 0.939 0.010 0.010 0.604 0.010 0.940 0.010 0.040 0.880 0.069 
"
RTG3	YBL103C	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	ATGACTCA	6.875195e-07	7.94	10.3614	8.68	"Basic helix-loop-helix-leucine zipper (bHLH/Zip) transcription factor that forms a complex with another bHLH/Zip protein, Rtg1p, to activate the retrograde (RTG) and TOR pathways
"	YAL028W, YAL029C, YBL097W, YBR167C, YBR168W, YCR018C-A, YCR019W, YCR096C, YDL017W, YDL018C, YDL044C, YDL236W, YDL247W, YDR042C, YDR131C, YDR179C, YDR179W-A, YDR434W, YDR473C, YDR522C, YEL050C, YER002W, YER115C, YER129W, YER138C, YFL011W, YFR023W, YGL001C, YGL178W, YGR071C, YGR072W, YGR273C, YHR011W, YHR043C, YIL036W, YIL037C, YIR005W, YJL203W, YJL204C, YJR088C, YJR089W, YJR108W, YKL071W, YKL177W, YKL179C, YKR004C, YKR009C, YKR061W, YKR089C, YKR090W, YKR103W, YLR105C, YLR125W, YLR276C, YLR316C, YLR318W, YLR322W, YLR363C, YLR364W, YMR049C, YMR098C, YMR193W, YMR258C, YNL009W, YOL144W, YOL145C, YOR058C, YPL124W, YPL208W, YPL209C, YPR197C	YER145C, YER178W, YHL016C, YIL116W, YKR039W, YOR225W, YOR227W, YDL131W, YGL009C, YHR146W, YLR027C, YLR029C, YGL231C, YHL047C, YLR217W, YMR009W, YOL016C, YOR220W, YOR226C, YGR120C, YLR089C, YLR061W, YLR435W, YOR036W, YOR382W, YPR138C, YDR342C, YDR098C, YDR100W, YFR003C, YHR053C, YHR055C, YIR034C, YKL016C, YJR149W, YLL034C, YMR105C, YNL147W, YOL136C, YPR184W, YAR064W, YAR068W, YBL027W, YDR339C, YER056C-A, YER030W, YHR208W, YIL052C, YLR154C, YMR284W, YMR314W, YMR316W, YBR061C, YBR129C, YFR004W, YKL011C, YLL002W, YLR304C, YMR072W, YMR074C, YMR135C, YNL142W, YOL139C, YOL109W, YOR086C, YBL026W, YDL191W, YDR279W, YER029C, YGL106W, YKL206C, YLR119W, YML024W, YMR255W, YNL302C, YPL111W, YPL081W, YKR022C, YNL030W, YOR261C, YOR203W, YFR044C, YKL119C, YLR038C, YOR385W, YBL092W, YDR071C, YDR077W, YIL117C, YNL055C, YNL090W, YOR198C, YOR230W, YOR202W, YJR148W, YLR200W, YBR164C, YDL135C, YDL075W, YEL051W, YJL126W, YLR438W, YOR010C, YOR046C, YMR145C, YOL118C, YOL150C, YOR327C, YOR357C, YBR297W, YHR214W, YLR194C, YMR260C, YPL090C, YPL154C, YBR101C, YBR105C, YDL012C, YDR167W, YDR139C, YGR012W, YHR030C, YJR119C, YJR150C, YMR112C, YMR142C, YOL143C, YOL149W, YOR298C-A, YPL273W, YBL028C, YCL025C, YDL201W, YER035W, YGR253C, YHR214W-A, YKL214C, YLR195C, YML063W, YML094W, YML095C-A, YMR321C, YNR001C, YNR003C, YPL117C, YPL091W, YBL103C, YCL074W, YER131W, YHR010W, YIL094C, YKR093W, YML131W, YOL058W, YBR207W, YDL082W, YDR210W, YGR136W, YLR416C, YLR420W, YMR178W, YNL255C, YOR051C, YOR021C, YLR262C, YLR292C, YLR294C, YNL064C, YNL096C, YNL037C, YOL032W, YOR210W, YAR018C, YDR209C, YGR135W, YGR137W, YKL120W, YLR075W, YMR241W, YOR052C, YBR082C, YBR084C-A, YCR097W, YDR112W, YFL028C, YGR019W, YHR071W, YKL030W, YKL001C, YMR120C, YOL126C, YOR333C, YOR383C, YJL167W, YLR136C, YMR300C, YCR096C, YDR111C, YDR481C, YOL119C, YCL031C, YDL241W, YER100W, YKL216W, YLR167W, YNR044W, YPL129W, YDR032C, YLR299W, YOR277C, YPL199C, YBR181C, YDL120W, YDR272W, YEL065W, YFR056C, YGL031C, YGR146C, YGR148C, YMR184W, YOR089C, YCR005C, YOR276W, YDL215C, YBR244W, YFR055W, YLR421C, YPL075W, YFL034C-A, YGR085C, YDL182W, YIL076W, YPL134C, YDR151C, YLR359W, YOR306C, YOR374W, YBR278W, YER073W, YGL098W, YJL200C, YKL160W, YNL007C, YNR050C, YOR184W	ACA1, BAS1, GCN4, MBP1, RSC3, STB5, SWI4, SWI6	"A | 0.620 0.001 0.001 0.997 0.001 0.103 0.224 0.448 
C | 0.052 0.001 0.001 0.001 0.997 0.069 0.758 0.121 
G | 0.259 0.001 0.997 0.001 0.001 0.310 0.001 0.190 
T | 0.069 0.997 0.001 0.001 0.001 0.518 0.017 0.241 
"
SFL1	YOR140W	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	ATAGAAGAAATAAAA	0.01764561	7.73	8.96224	10.47	"Transcriptional repressor and activator; involved in repression of flocculation-related genes, and activation of stress responsive genes; negatively regulated by cAMP-dependent protein kinase A subunit Tpk2p
"	YAR023C, YBL018C, YBR062C, YBR064W, YBR234C, YBR235W, YCL002C, YCL006C, YCL007C, YCL008C, YCL009C, YCL010C, YCR002C, YCR004C, YCR005C, YCR006C, YCR008W, YCR012W, YCR083W, YDL037C, YDL195W, YDR141C, YDR279W, YDR441C, YDR442W, YFR054C, YGL205W, YGL206C, YGR126W, YGR157W, YGR229C, YGR230W, YGR246C, YGR247W, YGR289C, YJR041C, YJR042W, YLR353W, YMR221C, YNR065C, YNR066C, YOR106W, YPR135W	YDR068W, YKL043W, YOR381W, YPR082C, YNR060W, YLR087C, YOR382W, YAR064W, YAR068W, YBR129C, YFR006W, YKR102W, YDL155W, YBR042C, YHR003C, YMR173W, YOL052C, YHR214W, YOR341W, YBL061C, YBR260C, YHR214W-A, YOR168W, YKR093W, YPL062W, YCL075W, YMR173W-A, YBR144C, YDR144C, YOR383C, YGR044C, YCR036W, YFL003C, YGL258W, YHR018C, YML021C, YLR269C, YKL010C	None	"A | 0.730 0.129 0.500 0.020 0.950 0.960 0.020 0.614 0.600 0.540 0.257 0.490 0.430 0.370 0.410 
C | 0.030 0.178 0.260 0.010 0.020 0.010 0.050 0.129 0.130 0.220 0.158 0.100 0.070 0.120 0.120 
G | 0.120 0.109 0.230 0.960 0.010 0.020 0.810 0.218 0.040 0.050 0.149 0.220 0.100 0.150 0.070 
T | 0.120 0.584 0.010 0.010 0.020 0.010 0.120 0.040 0.230 0.190 0.436 0.190 0.400 0.360 0.400 
"
SFP1	YLR403W	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	AAAAAATTTTCT	0.000930202	6.35	9.05501	10.53	"Transcription factor that controls expression of ribosome biogenesis genes in response to nutrients and stress, regulates G2/M transitions during mitotic cell cycle and DNA-damage response, modulates cell size; regulated by TORC1 and Mrs6p
"	YAL022C, YAR047C, YBR012C, YBR013C, YBR048W, YBR181C, YDL075W, YDL076C, YDL082W, YDL083C, YDL133W, YDR112W, YDR470C, YDR471W, YEL054C, YER078C, YER079W, YER116C, YER117W, YGL030W, YGL031C, YHR013C, YHR014W, YIL133C, YJL034W, YJL035C, YJL092W, YJL093C, YKL161C, YKL178C, YKR053C, YLL043W, YLL045C, YLR192C, YLR351C, YLR352W, YML070W, YML084W, YML085C, YMR316W, YNL096C, YNR041C, YNR043W, YOR032C, YOR070C, YOR116C, YOR117W, YOR119C, YOR120W, YOR134W, YOR138C, YOR140W, YOR391C, YOR393W, YPL018W, YPL019C, YPL034W, YPL143W, YPL152W, YPL153C, YPR102C, YPR103W	YBL113C, YBR034C, YCL050C, YCR012W, YCL055W, YDR064W, YDR432W, YDR370C, YER112W, YER145C, YER118C, YGL199C, YGL171W, YGL234W, YGR278W, YIL078W, YIL142W, YIL080W, YIL144W, YIL148W, YJR016C, YJR048W, YJR018W, YJR050W, YJR054W, YJR087W, YKR014C, YKR077W, YLR244C, YLR216C, YLR246W, YMR041C, YMR012W, YNL016W, YNL079C, YNL050C, YNL052W, YOL043C, YNR061C, YNR063W, YOL017W, YOR191W, YOR193W, YOR257W, YOR195W, YPL174C, YPL205C, YPL209C, YPL180W, YAL005C, YER013W, YKL122C, YAL039C, YBR187W, YBR219C, YBR158W, YBR189W, YBR191W, YDL130W, YDL100C, YDR188W, YDR254W, YEL042W, YFR032C-A, YGL009C, YGL013C, YGR091W, YGR093W, YGR124W, YHR113W, YHR143W, YHR174W, YJL049W, YJL117W, YJL055W, YJL087C, YKL043W, YKL074C, YKL045W, YKL076C, YKL047W, YKL049C, YKL111C, YLR025W, YLR056W, YLR058C, YLR029C, YLR060W, YLR062C, YLR094C, YLR432W, YLR463C, YLR465C, YLR406C, YLR467W, YMR190C, YMR220W, YMR222C, YMR193W, YMR194W, YMR226C, YNL209W, YNL241C, YOR065W, YOR004W, YOR039W, YOR377W, YPL017C, YOR381W, YPL051W, YPL053C, YCR057C, YDR301W, YBR029C, YBR001C, YBR031W, YBL087C, YCL049C, YCR013C, YCR043C, YDR063W, YDR037W, YDR429C, YDR399W, YDR433W, YER111C, YER175C, YER117W, YGR275W, YHL011C, YGR279C, YHL013C, YHL015W, YIL082W, YJR015W, YJR047C, YJR086W, YKR072C, YKR042W, YLR243W, YLR275W, YLR217W, YLR247C, YLR249W, YML113W, YMR015C, YNL047C, YNL082W, YNL053W, YNL084C, YOL042W, YOL044W, YNR060W, YOL014W, YOR224C, YOR194C, YOR258W, YPL173W, YPL204W, YPL206C, YPL177C, YPL240C, YPL242C, YKL203C, YLL048C, YCR097W-A, YKL123W, YAL003W, YAL035C-A, YAL036C, YBR155W, YBR186W, YBR157C, YBR220C, YBR222C, YDL061C, YDL063C, YDL095W, YDR187C, YDR191W, YDR221W, YEL043W, YEL047C, YFR033C, YGL040C, YFR037C, YGL012W, YGL044C, YGR092W, YGR094W, YGR123C, YGR155W, YGR096W, YHR142W, YHR173C, YJL080C, YJL114W, YJL052W, YKL044W, YKL048C, YKL079W, YKL110C, YLR026C, YLR089C, YLR028C, YLR061W, YLR399C, YLR460C, YLR462W, YLR403W, YLR464W, YLR405W, YLR435W, YLR466W, YMR189W, YMR191W, YMR221C, YMR163C, YNL206C, YNL272C, YNL210W, YNL212W, YNL244C, YOR032C, YOR064C, YOR005C, YOR036W, YOR070C, YOR378W, YPL016W, YPL048W, YPL018W, YPL020C, YAL035W, YDR342C, YDR351W, YDR262W, YER011W, YBR092C, YBR066C, YBR130C, YCR106W, YCR076C, YDL003W, YDL005C, YDL037C, YDR158W, YDR130C, YDR162C, YFL045C, YFR009W, YGR005C, YHR051W, YHR081W, YHR025W, YJL018W, YKL012W, YJR145C, YKL014C, YJR116W, YJR147W, YKL016C, YKL018W, YLL003W, YLL034C, YLL066C, YLR338W, YLR309C, YLR340W, YLR372W, YMR071C, YMR073C, YMR134W, YMR075C-A, YMR137C, YNL147W, YOL136C, YOL077C, YOL108C, YOR285W, YOR289W, YOR319W, YPR014C, YPR046W, YPL268W, YPR016C, YPR018W, YPR050C, YPR020W, YOR359W, YPL283C, YBL021C, YBL053W, YAR068W, YBL027W, YBR283C, YBR253W, YBR255W, YBR287W, YBR257W, YCL022C, YDL160C, YDR341C, YDR282C, YDR314C, YER026C, YER055C, YER028C, YER056C-A, YGL071W, YGL103W, YGL135W, YGL105W, YGR244C, YGR182C, YGR214W, YGR186W, YGR250C, YIL015C-A, YHR208W, YIL018W, YHR212C, YIL052C, YJL177W, YKL137W, YKL141W, YLR182W, YLR156W, YML023C, YML054C, YML056C, YML085C, YML027W, YML058C-A, YML087C, YML058W-A, YMR252C, YMR256C, YMR288W, YMR290C, YNL301C, YNL333W, YNL303W, YNL335W, YNL337W, YNR030W, YNL339C, YNR032C-A, YOR101W, YPL078C, YPL142C, YPL080C, YPL112C, YPL144W, YPL116W, YHR023W, YHR183W, YBR063C, YBR093C, YBR125C, YBR065C, YBR095C, YBR127C, YCR107W, YCR077C, YDL004W, YDR157W, YDR461W, YFL038C, YFL013C, YGR060W, YGR032W, YGR034W, YHR021C, YHR022C, YHR026W, YIR002C, YKL011C, YJR144W, YJR117W, YLL029W, YLR367W, YLR337C, YLR369W, YLR339C, YMR070W, YMR100W, YMR131C, YMR135C, YMR075W, YMR136W, YNL146W, YNL178W, YNL116W, YOL073C, YOL105C, YOL139C, YOL109W, YOL141W, YOR316C, YOR320C, YPR013C, YPL267W, YPR015C, YPL269W, YPR049C, YPR051W, YPR137W, YBR282W, YCL012W, YCL016C, YBR256C, YDL191W, YDL161W, YDL225W, YDR309C, YDR338C, YDR279W, YDR313C, YER052C, YER025W, YER056C, YER057C, YGL102C, YGL134W, YGL076C, YGR179C, YGR211W, YGR183C, YGR215W, YGR185C, YIL045W, YIL049W, YHR211W, YIL051C, YJL176C, YJL146W, YJL148W, YKL199C, YLR121C, YLR153C, YLR123C, YLR185W, YML022W, YML024W, YML026C, YML057W, YML086C, YML028W, YMR311C, YMR287C, YMR289W, YNL302C, YNL338W, YOR096W, YPL077C, YPL109C, YPL141C, YPL079W, YPL111W, YPL143W, YPL081W, YGR296W, YBR010W, YCL059C, YCR048W, YCR050C, YDR012W, YDR072C, YER125W, YGR284C, YHR001W-A, YHR005C, YIL118W, YIL150C, YIL090W, YIL092W, YIL124W, YIL156W, YJR024C, YJR094W-A, YKR020W, YKR022C, YKR053C, YLR222C, YLR282C, YLR224W, YLR254C, YLR284C, YLR226W, YLR286C, YLR287C-A, YMR048W, YMR052C-A, YNL061W, YOL019W, YNR067C, YOL023W, YOL054W, YOR263C, YOR201C, YOR233W, YOR203W, YPL213W, YPL245W, YPL215W, YPL217C, YPL250C, YAL015C, YAL044C, YBR163W, YBR195C, YBR227C, YBR199W, YBR233W, YDL070W, YDL074C, YDL136W, YDR196C, YDR224C, YDR226W, YDR202C, YGL047W, YGR099W, YGR160W, YGR130C, YGR162W, YHR121W, YKL113C, YKL054C, YKL056C, YLR033W, YLR064W, YLR035C, YLR068W, YLR038C, YLR102C, YLR439W, YLR441C, YMR168C, YMR228W, YMR230W, YMR172C-A, YMR200W, YMR232W, YMR173W, YNL215W, YNL279W, YNL217W, YNL249C, YNL281W, YNL253W, YOR009W, YOR011W, YOR075W, YOR077W, YOR047C, YOR389W, YPL029W, YPL060W, YPL160W, YBL092W, YBR039W, YBR011C, YCR049C, YDR077W, YDR377W, YER119C, YER152C, YER124C, YER154W, YHL017W, YHL049C, YGR285C, YHR004C, YIL119C, YIL155C, YKR046C, YKR048C, YKR021W, YLR281C, YLR223C, YLR253W, YLR283W, YLR225C, YLR285W, YLR227C, YML120C, YMR049C, YMR021C, YMR023C, YMR052W, YNL023C, YNL055C, YNL059C, YNR064C, YOL018C, YOL050C, YOL052C, YNR070W, YOR196C, YOR260W, YOR230W, YOR262W, YOR264W, YOR202W, YOR234C, YPL181W, YPL183C, YPL214C, YPL246C, YPL184C, YPL216W, YPL249C-A, YJR148W, YAL040C, YAL012W, YAL045C, YBR196C, YBR166C, YBR200W, YDL075W, YDL137W, YDR195W, YGL014W, YGL016W, YGR159C, YGR129W, YHR181W, YJL122W, YKL050C, YKL081W, YLR063W, YLR095C, YLR065C, YLR099C, YLR409C, YLR438W, YMR167W, YMR197C, YMR172W, YMR201C, YNL216W, YNL248C, YNL250W, YNL220W, YNL284C, YOR076C, YOR046C, YPL022W, YPL024W, YPL026C, YPL060C-A, YDR343C, YBR132C, YBR106W, YBR138C, YCR084C, YDL039C, YCR087W, YDL013W, YDR108W, YDR502C, YDR472W, YFL047W, YFR011C, YFL022C, YGR013W, YHR029C, YHR089C, YJL026W, YIR011C, YJR124C, YJR155W, YKL024C, YLR344W, YLR348C, YMR111C, YMR141C, YMR145C, YNL119W, YNL183C, YNL187W, YNL157W, YOL112W, YOL144W, YOL146W, YOL086C, YOL148C, YOL088C, YOR293W, YOR353C, YOR355W, YOR327C, YOR357C, YPR054W, YPR056W, YPL278C, YPR026W, YPR028W, YPR060C, YPR010C, YAR073W, YBL029W, YBL064C, YCL030C, YDL228C, YDL198C, YER036C, YER038C, YGL147C, YGR254W, YGR192C, YIL022W, YHR215W, YHR217C, YJL159W, YJL191W, YKL209C, YKL180W, YLR130C, YLR162W, YLR134W, YLR196W, YML091C, YML034W, YML062C, YML035C-A, YML095C, YMR291W, YMR293C, YMR320W, YMR294W-A, YMR296C, YNL311C, YOR167C, YPL118W, YPL150W, YPL120W, YPL090C, YPL154C, YPL092W, YFL014W, YFR019W, YHR039C, YBR103W, YBR105C, YBR137W, YCR087C-A, YCR088W, YDR167W, YDR471W, YFR012W, YGR038W, YHR058C, YHR090C, YHR032W, YHR062C, YHR092C, YHR064C, YIR004W, YIR035C, YIR037W, YIR010W, YJR119C, YKL021C, YJR123W, YJR154W, YLL004W, YLL067C, YLL039C, YLL041C, YLR312C, YLR347C, YLR379W, YLR349W, YMR077C, YMR108W, YMR138W, YMR079W, YMR110C, YMR142C, YMR083W, YNL118C, YNL182C, YNL156C, YNL188W, YOL143C, YOL113W, YOR294W, YOR324C, YOR296W, YOR356W, YOR298C-A, YPR055W, YPR025C, YPR057W, YPL137C, YOR341W, YNL002C, YAR071W, YBL028C, YAR075W, YBL030C, YBL032W, YBR258C, YCL025C, YCL027W, YBR296C, YDL229W, YDL167C, YDL201W, YGL078C, YGL110C, YGL148W, YGR187C, YGR251W, YGR191W, YHR213W, YIL053W, YIL057C, YHR216W, YJL156C, YJL188C, YJL158C, YJL190C, YKL212W, YKL150W, YKL181W, YKL214C, YLR129W, YLR159W, YLR161W, YML030W, YML090W, YML032C, YML035C, YML063W, YML065W, YMR290W-A, YMR319C, YMR263W, YMR294W, YMR295C, YMR323W, YNR032W, YNR007C, YPL117C, YPL153C, YER060W, YGL062W, YBR048W, YCL067C, YDR020C, YDR052C, YDR382W, YDR384C, YDR418W, YDR450W, YDR452W, YER159C, YER131W, YGL189C, YHL028W, YHR008C, YHR010W, YHL002W, YIL096C, YIL164C, YJR098C, YJR068W, YJR070C, YKR057W, YKR059W, YKR093W, YLR259C, YLR261C, YLR232W, YLR293C, YLR264W, YMR026C, YMR028W, YML133C, YMR061W, YNL065W, YNL067W, YNL069C, YNR077C, YOL002C, YOL033W, YOR207C, YOR271C, YPL252C, YIL114C, YAL023C, YBR207W, YDL082W, YDR264C, YEL026W, YER009W, YFR048W, YGL055W, YGR136W, YGR164W, YKL060C, YKL092C, YKL062W, YLR040C, YLR044C, YLR076C, YLR078C, YLR447C, YLR418C, YLR449W, YLR420W, YLR451W, YMR204C, YMR176W, YMR178W, YMR242C, YNL255C, YNL225C, YNL259C, YNL289W, YOR017W, YOR019W, YOR051C, YOR393W, YPL001W, YPL003W, YPL035C, YPL066W, YPL037C, YDL058W, YDR150W, YEL054C, YCR053W, YDR019C, YDR081C, YDR023W, YDR025W, YDR447C, YDR385W, YDR417C, YER126C, YER156C, YER158C, YER188W, YER190W, YGL245W, YGR293C, YHL027W, YHR007C, YHL001W, YHL031C, YIL127C, YKR056W, YKR088C, YKR029C, YKR092C, YLR288C, YLR260W, YLR231C, YLR262C, YLR292C, YLR233C, YLR294C, YMR025W, YMR027W, YMR056C, YMR029C, YMR058W, YMR031C, YMR060C, YNL031C, YNL064C, YNL096C, YNL066W, YNL098C, YNL100W, YNR072W, YOL057W, YNR074C, YOL059W, YNR076W, YOL030W, YOL061W, YOR270C, YPL220W, YPL251W, YPL226W, YJR127C, YLR084C, YAL049C, YBR236C, YDL081C, YDL143W, YDL083C, YDR233C, YGL054C, YGL056C, YFR051C, YGL026C, YFR053C, YGL028C, YGR106C, YGR163W, YGR108W, YGR137W, YGR109W-A, YGR141W, YHR128W, YHR133C, YHR163W, YJL068C, YJL070C, YJL134W, YKL089W, YKL120W, YKL059C, YKL061W, YKL124W, YKL063C, YKL095W, YLR071C, YLR103C, YLR041W, YLR073C, YLR043C, YLR075W, YLR107W, YLR045C, YLR109W, YLR413W, YLR446W, YLR417W, YLR448W, YML011C, YMR173W-A, YMR203W, YMR205C, YMR209C, YMR241W, YNL254C, YNL224C, YNL258C, YNL260C, YOR080W, YOR050C, YOR022C, YPL061W, YPL063W, YPL002C, YPL034W, YPL067C, YBR084C-A, YDL015C, YDL046W, YCR095C, YDL050C, YDL052C, YDR142C, YDR146C, YDR177W, YDR179C, YFL024C, YFL026W, YFL059W, YGR047C, YHR037W, YHR069C, YJL034W, YJL006C, YJL038C, YJR130C, YKL030W, YKL001C, YJR134C, YKL003C, YLL044W, YLL018C-A, YLR324W, YLR388W, YLR326W, YLR358C, YMR087W, YMR119W, YMR120C, YMR091C, YMR153C-A, YNL127W, YNL197C, YOL120C, YOL124C, YOL126C, YOR300W, YOR361C, YOR367W, YPR004C, YPR068C, YBL068W, YBL072C, YCL038C, YDR353W, YDR323C, YDR298C, YER043C, YER099C, YER072W, YGL091C, YGL123W, YGR260W, YGR264C, YGR234W, YHR219W, YJL193W, YJR007W, YKL153W, YLR136C, YLR198C, YLR168C, YLR170C, YLR172C, YML098W, YML041C, YML043C, YML072C, YMR326C, YMR300C, YMR272C, YMR302C, YMR304C-A, YNR045W, YOR181W, YPL094C, YPL126W, YPL158C, YPL096W, YBR079C, YBR143C, YBR145W, YDL014W, YDL051W, YDR145W, YDR481C, YDR544C, YFL056C, YFL027C, YFR024C, YGR046W, YGR078C, YGR020C, YHR068W, YJR158W, YKL027W, YKL029C, YLR008C, YLL045C, YLL018C, YLR383W, YLR355C, YLR325C, YLR357W, YMR116C, YMR146C, YMR088C, YMR119W-A, YMR121C, YNL126W, YNL160W, YNL162W, YNL164C, YOL089C, YOL119C, YOL121C, YOL155C, YOR330C, YOR360C, YOR304W, YPL281C, YPR061C, YPR031W, YPR033C, YPR003C, YPR035W, YPR067W, YBL006C, YCL037C, YDL241W, YDR321W, YDR354W, YDR295C, YDR324C, YDR297W, YER044C, YGL120C, YGL152C, YGR259C, YGR265W, YHR218W, YIL001W, YIL003W, YIL033C, YIL005W, YJL192C, YJL225C, YJL162C, YJL198W, YJR006W, YKL152C, YKL216W, YKL156W, YKL222C, YLR135W, YLR197W, YLR167W, YLR201C, YLR171W, YLR203C, YML069W, YML042W, YML071C, YML073C, YMR299C, YMR303C, YNR011C, YNR013C, YNR044W, YNR046W, YOR112W, YPL093W, YPL095C, YPL127C, YPL159C, YPL129W, YPL131W, YER091C, YBR054W, YBR056W, YBR026C, YBL111C, YCR034W, YCR069W, YCR072C, YDR058C, YDR458C, YDR460W, YGL191W, YGL225W, YGL256W, YHL004W, YHR018C, YHL009W-A, YHR020W, YIL106W, YIL138C, YJR104C, YJR044C, YKR065C, YKR097W, YKR037C, YKR101W, YLR299W, YLR242C, YMR063W, YMR035W, YMR065W, YMR006C, YNL103W, YNL107W, YNL109W, YOL035C, YOL039W, YOL010W, YOR277C, YOR279C, YOR249C, YPL197C, YPL229W, YPL258C, YPL260W, YEL027W, YAL060W, YAL062W, YBR211C, YBR181C, YBR215W, YBR247C, YBR249C, YDR270W, YDR244W, YEL034W, YEL065W, YEL038W, YGL031C, YGL037C, YGR113W, YGR146C, YGR148C, YGR176W, YHR136C, YHR170W, YHR141C, YJL077C, YJL079C, YKL070W, YKL072W, YLR048W, YLR112W, YLR082C, YLR114C, YLR086W, YLR453C, YML015C, YLR424W, YLR457C, YMR182C, YMR244C-A, YMR184W, YMR186W, YMR188C, YNL233W, YNL265C, YOR025W, YOR057W, YOR027W, YOR059C, YOR091W, YOR093C, YOR063W, YOR095C, YPL007C, YPL070W, YPL011C, YPL074W, YPL045W, YPR106W, YPR137C-A, YPR163C, YPR108W, YPR165W, YBR025C, YBL109W, YCR031C, YDR057W, YDR091C, YDR421W, YDR453C, YER165W, YGL253W, YGL255W, YHL033C, YHL039W, YHR019C, YIL133C, YIL105C, YIL169C, YJR071W, YJR045C, YKR094C, YLR298C, YLR300W, YLR271W, YMR001C, YMR032W, YMR003W, YMR064W, YMR005W, YMR007W, YNL045W, YNL108C, YOL034W, YOL065C, YOL069W, YOL040C, YOR244W, YOR278W, YOR216C, YOR248W, YOR280C, YPL196W, YPL228W, YPL198W, YPL232W, YPL202C, YKL009W, YAL059W, YAL032C, YBR246W, YDL147W, YEL037C, YER019W, YGL030W, YGL032C, YGR143W, YGR173W, YGR118W, YGR149W, YGR177C, YHR197W, YHR137W, YHR169W, YHR201C, YHR203C, YJL136C, YJL138C, YJL140W, YKL067W, YKL100C, YKL071W, YKL102C, YLR079W, YLR049C, YLR113W, YLR083C, YLR117C, YLR452C, YML018C, YMR243C, YMR183C, YMR185W, YMR215W, YMR187C, YMR217W, YMR250W, YNL232W, YNL234W, YNL266W, YOR026W, YOR058C, YPL038W, YPL071C, YPL012W, YDR104C, YBR118W, YDR154C, YDR184C, YDR156W, YDR186C, YFL063W, YFL034C-A, YFR031C-A, YGR085C, YGR027C, YGR087C, YHR046C, YHR076W, YHR111W, YKL005C, YKL006W, YJR141W, YKL041W, YLL024C, YLR023C, YLR360W, YLR330W, YLR362W, YMR093W, YMR097C, YNL171C, YNL141W, YOL100W, YOL102C, YOR369C, YOR309C, YOR371C, YOR373W, YOR375C, YPR038W, YPR074C, YPR012W, YPR044C, YBL076C, YCL040W, YCL009C, YDL182W, YDL184C, YDR329C, YER048C, YGL095C, YGR204W, YGR240C, YGR274C, YIL008W, YIL011W, YJR009C, YKL192C, YLR174W, YLR148W, YLR150W, YLR180W, YLR212C, YML106W, YML110C, YMR276W, YMR305C, YNL008C, YNL010W, YMR308C, YMR282C, YMR310C, YNL014W, YNL325C, YNR049C, YNR020C, YNL329C, YNR053C, YNL331C, YNR055C, YOR189W, YPL102C, YPL168W, YPL138C, YPL170W, YBR086C, YBR121C, YCR102C, YDR119W, YFL064C, YFR027W, YFL068W, YGR054W, YHR104W, YHR108W, YJR135C, YJR136C, YKL040C, YLL019C, YLL051C, YLL053C, YLR022C, YLR361C, YLR333C, YLR397C, YMR123W, YMR094W, YMR096W, YMR127C, YMR098C, YNL166C, YNL136W, YNL140C, YOL097C, YOL127W, YOL099C, YOL101C, YOL165C, YOR338W, YOR308C, YOR340C, YOR370C, YOR310C, YOR342C, YOR312C, YPR037C, YPR069C, YPR039W, YPR041W, YPR043W, YPR075C, YBL077W, YBL081W, YCL041C, YBR278W, YCL008C, YCL043C, YDR362C, YER073W, YER102W, YER050C, YER079W, YGL130W, YGL162W, YGR235C, YGR207C, YIL069C, YIL009C-A, YJL200C, YJR010C-A, YJL172W, YLR205C, YLR175W, YLR207W, YLR149C, YML046W, YML049C, YML109W, YMR277W, YMR306C-A, YNL009W, YMR309C, YNR017W, YNR048W, YNL328C, YNR021W, YNL330C, YNR023W, YOR182C, YPL101W, YPL133C, YPL105C, YPL107W, YPL139C, YIL115C	AFT2, FHL1, RAP1	"A | 0.535 0.788 0.891 0.900 0.860 0.540 0.090 0.040 0.020 0.071 0.129 0.081 
C | 0.040 0.071 0.040 0.010 0.010 0.030 0.040 0.050 0.050 0.071 0.406 0.354 
G | 0.343 0.071 0.050 0.050 0.040 0.020 0.010 0.010 0.040 0.071 0.089 0.101 
T | 0.081 0.071 0.020 0.040 0.090 0.410 0.860 0.900 0.891 0.788 0.376 0.465 
"
SIP4	YJL089W	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	CGGTTGAATGGAA	6.987296e-18	11.45	15.3009	14.25	"C6 zinc cluster transcriptional activator that binds to the carbon source-responsive element (CSRE) of gluconeogenic genes; involved in the positive regulation of gluconeogenesis; regulated by Snf1p protein kinase; localized to the nucleus
"	YAL009W, YAL010C, YAL021C, YBR061C, YCR018C-A, YCR019W, YCR083W, YDL091C, YDL176W, YDL177C, YDR016C, YDR086C, YDR098C-A, YDR098C-B, YDR131C, YDR184C, YDR257C, YDR282C, YDR317W, YDR326C, YDR327W, YDR369C, YDR370C, YDR371W, YDR372C, YDR373W, YDR454C, YDR456W, YDR522C, YDR523C, YEL030W, YEL048C, YER023W, YFR002W, YGL001C, YGL002W, YGL003C, YGL185C, YGL192W, YGL194C, YGL230C, YGR071C, YGR072W, YGR089W, YGR104C, YGR105W, YGR188C, YHL042W, YHR155W, YIL110W, YJL111W, YJR098C, YJR099W, YJR108W, YKL077W, YKR031C, YKR032W, YKR034W, YKR061W, YLR127C, YLR128W, YML002W, YMR176W, YMR211W, YMR258C, YNL081C, YNL102W, YNL129W, YNL130C, YNL260C, YNR039C, YNR040W, YNR048W, YOL023W, YOL072W, YOL073C, YOL079W, YOL160W, YOR093C, YOR094W, YOR148C, YOR266W, YPL122C, YPL260W	YKR071C, YHR146W, YGR151C, YHR179W, YPL016W, YLR368W, YMR314W, YBR129C, YBL058W, YER029C, YOR229W, YAR015W, YOR043W, YJR094C, YMR023C, YNR066C, YLR099C, YJR157W, YNL157W, YBR265W, YMR294W-A, YPL122C, YBR135W, YGR012W, YIR010W, YOR324C, YNL065W, YMR178W, YNL289W, YDR019C, YAL062W, YNL299W, YBR244W, YNL264C	None	"A | 0.005 0.005 0.011 0.263 0.007 0.032 0.717 0.904 0.057 0.008 0.088 0.767 0.475 
C | 0.960 0.003 0.006 0.231 0.231 0.193 0.013 0.004 0.087 0.013 0.003 0.005 0.206 
G | 0.005 0.905 0.812 0.120 0.023 0.423 0.003 0.003 0.003 0.962 0.904 0.223 0.306 
T | 0.030 0.087 0.171 0.386 0.739 0.352 0.267 0.089 0.853 0.017 0.005 0.005 0.014 
"
SKN7	YHR206W, POS9, BRY1	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	AAGGCCCCGACC	4.4864176e-50	6.97	11.4235	12.85	"Nuclear response regulator and transcription factor, part of a branched two-component signaling system; required for optimal induction of heat-shock genes in response to oxidative stress; involved in osmoregulation
"	YAR068W, YBL027W, YBL028C, YBL029W, YBR157C, YBR158W, YCR064C, YCR065W, YCR066W, YCR073C, YDL047W, YDL049C, YDL078C, YDL137W, YDR006C, YDR007W, YDR010C, YDR011W, YDR043C, YDR044W, YDR061W, YDR154C, YDR155C, YDR156W, YDR157W, YDR158W, YDR186C, YDR188W, YDR297W, YDR307W, YDR309C, YDR441C, YDR442W, YDR524C, YDR525W, YDR526C, YEL017C-A, YEL017W, YEL044W, YEL045C, YEL046C, YEL054C, YER011W, YER075C, YER137C-A, YFL021W, YFL022C, YFL039C, YGL055W, YGL056C, YGL125W, YGL234W, YGL236C, YGR032W, YGR060W, YGR088W, YGR106C, YGR140W, YGR143W, YGR249W, YGR260W, YGR279C, YHL034C, YHR003C, YIL012W, YIL013C, YIL058W, YIL060W, YIL061C, YIL099W, YIR020C, YJL048C, YJL105W, YJL112W, YJL115W, YJL116C, YJL148W, YJL158C, YKL062W, YKL096W-A, YKL097C, YKL109W, YKR011C, YKR013W, YKR040C, YKR042W, YKR097W, YLL019C, YLL020C, YLR108C, YLR109W, YLR110C, YLR111W, YLR205C, YLR206W, YLR257W, YLR354C, YLR372W, YLR399C, YLR400W, YLR406C, YLR407W, YML007W, YML008C, YML052W, YML053C, YML088W, YML089C, YML091C, YMR016C, YMR017W, YMR018W, YMR019W, YMR037C, YMR122C, YMR135C, YMR136W, YMR145C, YMR165C, YMR171C, YMR172C-A, YMR172W, YMR173W, YMR173W-A, YMR199W, YMR251W-A, YMR252C, YMR302C, YMR304C-A, YMR305C, YMR306W, YNL014W, YNL034W, YNL098C, YNL103W, YNL104C, YNL170W, YNL172W, YNL173C, YOL026C, YOL052C-A, YOL059W, YOL060C, YOR098C, YOR099W, YOR100C, YOR101W, YOR107W, YOR108W, YOR315W, YOR348C, YOR349W, YPL024W, YPL025C, YPL090C, YPL230W, YPR008W, YPR013C, YPR065W, YPR149W, YPR151C, YPR158C-C, YPR158C-D, YPR159W, YPR160W, YPR161C	YCR040W, YIL082W-A, YKR012C, YML116W, YDL131W, YDR220C, YGL009C, YCR013C, YCR041W, YGR279C, YKR042W, YKR013W, YNR060W, YCR097W-A, YGL038C, YHR143W-A, YHR179W, YOR068C, YER011W, YBR098W, YFR005C, YLR340W, YOR351C, YPL187W, YGL105W, YHR208W, YDR461W, YFR006W, YMR135C, YNL146W, YCL018W, YGR185C, YIL015W, YHR209W, YJL144W, YML055W, YML028W, YNL300W, YER155C, YDL133C-A, YLR439W, YMR173W, YOR009W, YBR011C, YDR379W, YER152C, YER154W, YIL153W, YNL055C, YJR148W, YAL012W, YLR099C, YOR010C, YDR502C, YMR139W, YOL144W, YKL178C, YLR343W, YOL143C, YJL158C, YKL177W, YGL250W, YKR061W, YKR093W, YPL252C, YKL096W, YLR040C, YLR042C, YLR108C, YLR420W, YBL098W, YCL066W, YKR086W, YOR210W, YKL120W, YLR041W, YLR109W, YMR173W-A, YOR084W, YPL063W, YCR097W, YFL026W, YHR072W-A, YOL122C, YOL126C, YDR353W, YGL089C, YMR304C-A, YDR297W, YIL061C, YJR004C, YKL216W, YNL322C, YKR035W-A, YLR303W, YMR006C, YHR141C, YJL079C, YOR063W, YDR453C, YLR302C, YOR246C, YBR244W, YGL032C, YKL096W-A, YIR020W-B, YKL008C, YMR099C, YOR034C, YCL009C, YDL182W, YDL184C, YKL194C, YLR180W, YMR276W, YMR305C, YDR151C, YDR519W, YGR086C, YMR158W, YNL200C, YPR173C	CAT8, GIS1, HAP5, MSN2, MSN4, PHD1, RGM1, RSC3, SOK2, STB1, SWI4, USV1, YRM1	"A | 0.520 0.530 0.240 0.130 0.010 0.010 0.010 0.330 0.010 0.606 0.170 0.080 
C | 0.110 0.150 0.020 0.010 0.376 0.970 0.380 0.490 0.010 0.111 0.580 0.700 
G | 0.260 0.240 0.660 0.850 0.267 0.010 0.280 0.170 0.960 0.242 0.010 0.170 
T | 0.110 0.080 0.080 0.010 0.347 0.010 0.330 0.010 0.020 0.040 0.240 0.050 
"
SKO1	YNL167C, ACR1	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	TACGTCAT	1.831553e-12	8.58	10.1306	9.29	"Basic leucine zipper (bZIP) transcription factor of the ATF/CREB family, forms a complex with Tup1p and Ssn6p to both activate and repress transcription; cytosolic and nuclear protein involved in osmotic and oxidative stress responses
"	YBL029W, YBL030C, YBL043W, YBR112C, YBR114W, YDR072C, YDR073W, YDR077W, YDR210W-D, YDR259C, YDR441C, YDR442W, YDR535C, YDR536W, YEL069C, YER017C, YER075C, YER076C, YER149C, YER150W, YFL014W, YFL015C, YFL016C, YGR050C, YGR140W, YGR150C, YGR241C, YGR243W, YGR249W, YHL041W, YHR033W, YHR049W, YHR096C, YIL119C, YIL122W, YIL170W, YIL171W, YIL172C, YJL106W, YJL107C, YJL108C, YJL219W, YJL221C, YJR145C, YJR146W, YJR147W, YKL060C, YKL096W, YKL110C, YKR040C, YKR042W, YLR108C, YLR109W, YLR286C, YLR300W, YMR017W, YMR037C, YMR070W, YMR135C, YMR136W, YMR151W, YMR172C-A, YMR173W, YMR173W-A, YMR239C, YMR303C, YMR304W, YNL178W, YNR034W, YOL156W, YOL157C, YOR028C, YOR029W, YOR246C, YOR247W, YOR248W, YOR317W, YOR318C, YOR319W, YOR348C, YOR349W, YOR374W, YPL024W, YPL025C, YPL061W, YPL062W, YPL081W, YPL082C, YPR005C, YPR013C, YPR063C, YPR064W, YPR065W	YDR368W, YML112W, YNR061C, YHR146W, YPL053C, YCL047C, YNR060W, YPL177C, YAL053W, YBR157C, YBR161W, YOR038C, YPL016W, YOL136C, YPL135W, YML027W, YNR026C, YNR028W, YBR067C, YBR129C, YFR006W, YJR144W, YMR104C, YNL116W, YBL058W, YBR288C, YDR309C, YDR279W, YER029C, YGR243W, YIL015W, YKL206C, YLR183C, YIL118W, YOR229W, YPL215W, YAR015W, YOR043W, YDR077W, YNR066C, YJR148W, YLR099C, YMR199W, YOR074C, YHR033W, YOL150C, YBR265W, YDR347W, YGR220C, YNR035C, YPL118W, YPL122C, YPL092W, YPL156C, YBR135W, YFL048C, YGR012W, YHR094C, YLR343W, YOR324C, YOR354C, YPR057W, YOR341W, YCL027W, YBR264C, YDL201W, YER064C, YGL112C, YGR219W, YGR253C, YHR214W-A, YKL144C, YKL212W, YKL150W, YKL214C, YLR191W, YLR163C, YLR195C, YMR321C, YMR295C, YNR003C, YNR034W, YMR055C, YML131W, YNL065W, YKL096W, YNL289W, YDR019C, YLR260W, YMR060C, YNL098C, YNL100W, YAR018C, YGR108W, YGR139W, YOL156W, YOR367W, YJL167W, YHR096C, YLR353W, YOL151W, YOL155C, YBL071C, YNR044W, YPL163C, YBR054W, YHR018C, YIL170W, YLR297W, YGR144W, YHR200W, YMR247C, YIL169C, YLR300W, YMR034C, YNL076W, YBR244W, YEL037C, YGL032C, YJL108C, YLR049C, YLR081W, YLR452C, YDL023C, YDR122W, YHR049W, YNL167C, YNR018W, YBR089W, YDL022W, YFR025C, YGR052W, YJL044C, YIL010W, YIL041W, YNR052C, YNL330C, YOR184W	SUM1	"A | 0.089 0.938 0.001 0.111 0.092 0.113 0.945 0.211 
C | 0.199 0.001 0.943 0.002 0.060 0.885 0.001 0.152 
G | 0.016 0.045 0.001 0.886 0.001 0.001 0.053 0.088 
T | 0.696 0.016 0.055 0.001 0.847 0.001 0.001 0.549 
"
SMP1	YBR182C	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	CTATATTTAG	2.156861e-07	6.07	7.4821	8.32	"Putative transcription factor involved in regulating the response to osmotic stress; member of the MADS-box family of transcription factors
"	YAL022C, YBL001C, YBL037W, YBL087C, YBL106C, YBL109W, YBL111C, YBL112C, YBL113C, YBR057C, YBR181C, YBR182C, YBR183W, YBR188C, YBR189W, YBR190W, YBR191W, YBR298C, YBR299W, YCR073C, YDL060W, YDL061C, YDL075W, YDL076C, YDR048C, YDR309C, YDR342C, YDR350C, YDR351W, YDR366C, YDR368W, YDR418W, YDR420W, YDR500C, YDR501W, YDR543C, YDR544C, YDR545W, YEL040W, YEL054C, YER001W, YER011W, YER074W, YER132C, YFL063W, YFL064C, YFL065C, YFR031C-A, YGL030W, YGL031C, YGL077C, YGL115W, YGL134W, YGL135W, YGL136C, YGL259W, YGR117C, YGR118W, YGR143W, YGR190C, YGR282C, YGR283C, YHL027W, YHL034C, YHL041W, YHR021C, YHR021W-A, YHR030C, YHR080C, YHR081W, YHR087W, YHR091C, YHR193C, YHR194W, YHR195W, YIL015C-A, YIL122W, YIL133C, YIL174W, YIL175W, YIR013C, YIR014W, YIR020C, YIR039C, YJL039C, YJL189W, YJL190C, YJL191W, YJL192C, YJL225C, YJR044C, YJR100C, YJR158W, YKL096W, YKL163W, YKL164C, YKL180W, YKL185W, YKL186C, YKR102W, YKR105C, YKR106W, YLL065W, YLR047C, YLR048W, YLR074C, YLR075W, YLR105C, YLR287C, YLR300W, YLR332W, YLR368W, YLR387C, YLR388W, YLR389C, YLR390W, YLR390W-A, YLR392C, YLR393W, YLR394W, YLR413W, YLR463C, YLR465C, YLR467W, YML026C, YML111W, YML132W, YML133C, YMR013C, YMR014W, YMR015C, YMR165C, YMR251W-A, YNL065W, YNL066W, YNL087W, YNL097C, YNL113W, YNL115C, YNL145W, YNL236W, YNL288W, YNL302C, YNL337W, YNL338W, YNL339C, YNR050C, YOL077W-A, YOL078W, YOL080C, YOL121C, YOR134W, YOR137C, YOR138C, YOR140W, YOR236W, YOR268C, YOR269W, YOR318C, YOR319W, YOR323C, YOR325W, YOR369C, YPL018W, YPL019C, YPL050C, YPL059W, YPL060C-A, YPL090C, YPL143W, YPL175W, YPL176C, YPL192C, YPL198W, YPL251W, YPL253C, YPL257W-A, YPL257W-B, YPL283C, YPR124W, YPR198W	YHL014C, YPL046C, YPL016W, YBR066C, YDR468C, YDL188C, YJR146W, YMR133W, YAR062W, YDR281C, YBL093C, YER089C, YKL148C, YLR234W, YIL097W, YNL197C, YKL188C, YHR136C, YMR251W, YBR053C, YBL106C, YBR023C, YMR034C, YBR182C	None	"A | 0.364 0.003 0.959 0.092 0.426 0.251 0.324 0.009 0.975 0.009 
C | 0.529 0.019 0.022 0.191 0.135 0.153 0.090 0.073 0.004 0.058 
G | 0.063 0.002 0.011 0.056 0.161 0.118 0.097 0.058 0.018 0.531 
T | 0.044 0.976 0.008 0.661 0.278 0.479 0.489 0.860 0.003 0.402 
"
SNF1	YDR477W, PAS14, HAF3, GLC2, CCR1, CAT1	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	CCGAGAATCGAACCCGG	1.0	18.54	33.9399	24.72	"AMP-activated serine/threonine protein kinase found in a complex containing Snf4p and members of the Sip1p/Sip2p/Gal83p family; required for transcription of glucose-repressed genes, thermotolerance, sporulation, and peroxisome biogenesis
"	YAR050W, YBR026C, YBR027C, YCL054W, YDR282C, YDR356W, YGR074W, YGR100W, YHR109W, YIL010W, YJR041C, YJR042W, YMR134W, YMR225C, YNL324W, YNL326C, YOR022C, YPL123C, YPR091C, YPR169W, YPR200C, YPR201W	YJR048W, YLR246W, YNL052W, YBR219C, YKL043W, YLR058C, YOR065W, YFR033C, YMR189W, YPL016W, YDR342C, YHR051W, YJR112W, YLL030C, YMR103C, YMR107W, YNL111C, YOR317W, YAR064W, YAR068W, YGL077C, YML027W, YNR028W, YBR129C, YLL061W, YMR070W, YMR104C, YNL144C, YNL116W, YGR243W, YJL146W, YLR183C, YNL300W, YIL124W, YNL024C, YKL053C-A, YLR038C, YMR173W, YPL057C, YER152C, YJR025C, YMR023C, YNL090W, YOR230W, YOR202W, YJR148W, YDL132W, YDR343C, YOL082W, YOR353C, YOR357C, YOR298W, YPL278C, YDL198C, YHR214W, YNL309W, YNR035C, YFL021W, YHR094C, YIR010W, YMR083W, YMR144W, YNL156C, YPL137C, YBR296C, YHR214W-A, YLR133W, YIL094C, YNL099C, YOL002C, YDR345C, YIL114C, YBR177C, YGL055W, YNL289W, YLR260W, YLR290C, YLR294C, YPL253C, YMR173W-A, YDL048C, YGR019W, YGR049W, YMR120C, YOL156W, YOR367W, YPR068C, YJL167W, YMR274C, YNR041C, YBR139W, YDR174W, YDR477W, YHR096C, YIR016W, YJL003W, YLR355C, YOL119C, YBR298C, YNR042W, YPL163C, YCR067C, YHR018C, YIL172C, YLR297W, YMR002W, YOR245C, YGR176W, YMR182C, YPR159W, YGL259W, YKR066C, YKR098C, YMR062C, YGR177C, YKL067W, YLR079W, YLR049C, YLR081W, YMR181C, YDR122W, YLR360W, YMR276W, YPL134C, YBR151W, YFR025C, YGR086C, YKL007W, YOL101C, YIL010W, YIL041W, YML048W	None	"A | 0.001 0.001 0.001 0.499 0.001 0.499 0.997 0.001 0.001 0.001 0.997 0.997 0.001 0.001 0.001 0.001 0.001 
C | 0.997 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.997 0.499 0.997 0.001 0.001 
G | 0.001 0.001 0.997 0.499 0.997 0.499 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.997 0.997 
T | 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.499 0.001 0.001 0.001 
"
SNT2	YGL131C	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	ATGATAGCGCCGTAC	1.024879e-34	14.4	19.9112	16.8	"DNA binding protein with similarity to the S. pombe Snt2 protein; computational analysis suggests a role in regulation of expression of genes encoding amine transporters
"	YAL038W, YAL039C, YAL053W, YAL054C, YAR050W, YBL073W, YBL074C, YBL075C, YBL095W, YBR138C, YBR139W, YBR143C, YCR090C, YCR091W, YDR008C, YDR009W, YDR046C, YDR047W, YDR261W-A, YDR261W-B, YDR366C, YDR368W, YDR543C, YER189W, YER190W, YGR110W, YHR009C, YHR010W, YHR138C, YHR160C, YHR175W, YHR214C-B, YHR214C-C, YHR215W, YHR216W, YHR218W, YHR219W, YIL102C, YIL155C, YIL159W, YIL160C, YJL092W, YJL093C, YJL148W, YJL184W, YJL185C, YJR130C, YJR131W, YJR153W, YKL171W, YLL004W, YLL005C, YLR149C, YLR150W, YLR176C, YLR177W, YLR228C, YLR230W, YLR373C, YLR375W, YMR045C, YMR046C, YMR052W, YNL181W, YNL182C, YNL337W, YOL116W, YOR236W, YPR104C, YPR158W, YPR184W	No Data	None	"A | 0.446 0.162 0.036 0.570 0.001 0.997 0.001 0.001 0.001 0.001 0.001 0.326 0.208 0.333 0.185 
C | 0.099 0.088 0.001 0.081 0.001 0.001 0.001 0.997 0.001 0.997 0.997 0.011 0.349 0.190 0.360 
G | 0.099 0.088 0.962 0.313 0.001 0.001 0.997 0.001 0.997 0.001 0.001 0.627 0.088 0.167 0.099 
T | 0.356 0.662 0.001 0.036 0.997 0.001 0.001 0.001 0.001 0.001 0.001 0.036 0.356 0.310 0.356 
"
SOK2	YMR016C	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	TGCAGGAA	1.663555e-17	6.27	7.49328	8.21	"Nuclear protein that plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA) signal transduction pathway; negatively regulates pseudohyphal differentiation; homologous to several transcription factors
"	YAL064W, YBL029W, YBR280C, YCR098C, YDL245C, YDL246C, YDR077W, YDR098C, YDR259C, YDR441C, YDR442W, YEL040W, YEL069C, YEL070W, YER033C, YER034W, YER045C, YFL026W, YFL027C, YGL158W, YGR084C, YGR249W, YGR282C, YHR005C, YHR094C, YHR095W, YHR118C, YHR119W, YIL099W, YIL118W, YIL119C, YIL170W, YIL171W, YIL172C, YIR020C, YJL216C, YJL219W, YJL221C, YJR158W, YJR159W, YKL007W, YKL008C, YKL044W, YKL110C, YLR043C, YMR119W, YMR119W-A, YMR319C, YNL217W, YOL156W, YOL157C, YPR013C	YKR012C, YMR016C, YHR146W, YKL043W, YOR071C, YPL047W, YGR279C, YKR013W, YOR192C, YHR179W, YKL044W, YPL016W, YDR342C, YGR033C, YHR053C, YLR342W, YMR105C, YOR317W, YGR250C, YMR314W, YFR016C, YBR093C, YBR067C, YBR129C, YFR006W, YOR086C, YER029C, YBR010W, YCR050C, YNL030W, YLR100W, YBR009C, YMR017W, YNR066C, YJR148W, YER001W, YLR101C, YOR074C, YDR343C, YOL150C, YJL217W, YFL014W, YLR313C, YLR377C, YOL149W, YPL137C, YBR264C, YBR296C, YKL062W, YNL255C, YER158C, YMR060C, YNL031C, YAR018C, YGR139W, YKL120W, YPL061W, YBR084C-A, YOR305W, YOR367W, YJL167W, YLR355C, YOL119C, YOL151W, YOL123W, YER094C, YER067W, YER044C, YER100W, YNR044W, YPL127C, YER091C, YMR002W, YGR176W, YGL255W, YLR237W, YLR300W, YMR034C, YMR038C, YKL009W, YAL061W, YGL032C, YGR147C, YHR135C, YHR139C, YLR079W, YNL264C, YDL027C, YHR049W, YLR398C, YIL011W, YOR374W, YPR176C	AFT1, GIS1, RGM1, SKN7, USV1	"A | 0.083 0.035 0.040 0.853 0.037 0.153 0.407 0.558 
C | 0.190 0.005 0.947 0.005 0.080 0.233 0.213 0.122 
G | 0.108 0.946 0.005 0.134 0.743 0.503 0.198 0.157 
T | 0.619 0.014 0.008 0.008 0.140 0.111 0.182 0.163 
"
SPT15	YER148W, TBP, TBP1, BTF1	Pachkov et al	http://www.ncbi.nlm.nih.gov/pubmed/17130146	ATTTATATATT		6.97	10.1385	9.27	"TATA-binding protein, general transcription factor that interacts with other factors to form the preinitiation complex at promoters, essential for viability
"	No Data	No Data	None	"A | 0.440 0.080 0.120 0.040 0.958 0.080 0.997 0.001 0.679 0.240 0.160 
C | 0.120 0.120 0.001 0.001 0.040 0.001 0.001 0.200 0.040 0.240 0.120 
G | 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.280 0.040 0.160 
T | 0.440 0.799 0.878 0.958 0.001 0.918 0.001 0.798 0.001 0.480 0.560 
"
SPT2	YER161C, EXA1, SIN1	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	CCTGTATTTAA	3.680788e-15	7.27	10.5692	10.26	"Protein involved in negative regulation of transcription; required for RNA polyadenylation; exhibits regulated interactions with both histones and SWI-SNF components, has similarity to mammalian HMG1 proteins
"	YAL037W, YAR009C, YAR068W, YBL005W-A, YBL005W-B, YBR159W, YBR192W, YDL228C, YDR042C, YDR075W, YDR153C, YDR210W-D, YDR226W, YDR381W, YDR386W, YDR449C, YDR450W, YDR472W, YDR524C, YDR525W, YEL033W, YEL034W, YEL035C, YEL047C, YER007C-A, YER138C, YFL030W, YGR190C, YGR192C, YHL034C, YHR135C, YHR173C, YHR174W, YHR175W, YIL134W, YIL167W, YIL168W, YIL169C, YJL013C, YJL048C, YJL137C, YJL148W, YKL038W, YKL057C, YKL118W, YKL153W, YKL181W, YKL210W, YLL004W, YLL005C, YLL014W, YLL015W, YLL026W, YLL044W, YLL046C, YLR043C, YLR057W, YLR062C, YLR063W, YLR076C, YLR077W, YLR193C, YLR301W, YLR339C, YLR341W, YLR354C, YLR367W, YLR368W, YML027W, YML057W, YML124C, YMR193C-A, YNL066W, YNL160W, YNL189W, YNL299W, YOL041C, YOL087C, YOL121C, YOL154W, YOL155C, YOR042W, YOR236W, YOR272W, YPL060W, YPL241C, YPL252C, YPR066W, YPR091C	YHL048W, YML114C, YDR222W, YDR399W, YML113W, YOL011W, YAL003W, YFR032C, YFR033C, YHR175W, YMR189W, YPL014W, YLL034C, YLR374C, YMR103C, YOL136C, YDR339C, YER055C, YGL103W, YGR250C, YLR156W, YLR186W, YML027W, YJL017W, YMR104C, YNL116W, YOR288C, YDR279W, YER081W, YER029C, YPL111W, YCR021C, YIL118W, YLR224W, YLR226W, YNL089C, YOR263C, YOR267C, YAL044C, YAR015W, YBR195C, YKL051W, YKL119C, YLR412W, YOR073W, YOR043W, YPL055C, YIL091C, YKR080W, YLR281C, YMR017W, YML124C, YMR023C, YNL055C, YOR264W, YJL122W, YJL124C, YLR099C, YLR101C, YOR384W, YMR145C, YPR060C, YBR265W, YDR347W, YER063W, YLR192C, YIR035C, YJR150C, YLL037W, YLR375W, YMR144W, YOL085C, YPL273W, YBL028C, YBR296C, YDL201W, YER064C, YGR219W, YKL181W, YML063W, YMR321C, YNR038W, YPR167C, YGR138C, YLR416C, YDR019C, YNL033W, YOR236W, YOR268C, YLR454W, YAR018C, YGR108W, YGR139W, YLR043C, YLR077W, YNL222W, YDL048C, YGR079W, YLR354C, YGR234W, YDR174W, YLR353W, YLR387C, YNL160W, YOL155C, YOR304W, YJL196C, YNR044W, YER091C, YBR054W, YLR297W, YLR301W, YOL070C, YML015C, YLR428C, YDR055W, YIL169C, YMR001C, YMR034C, YNL045W, YKL009W, YBR244W, YFR055W, YHR135C, YHR137W, YLR049C, YMR181C, YMR250W, YOR092W, YPL040C, YLR398C, YOL098C, YGR024C, YOR372C, YOR312C, YPR009W, YPR041W, YPR073C, YGR235C, YIL041W, YNR052C	None	"A | 0.056 0.417 0.167 0.028 0.112 0.584 0.001 0.056 0.112 0.997 0.445 
C | 0.526 0.581 0.001 0.001 0.001 0.332 0.001 0.360 0.139 0.001 0.138 
G | 0.001 0.001 0.056 0.943 0.001 0.028 0.139 0.001 0.111 0.001 0.001 
T | 0.417 0.001 0.777 0.028 0.886 0.056 0.859 0.583 0.639 0.001 0.417 
"
SPT23	YKL020C	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	AAAATCAA	9.860755e-07	5.78	8.1088	7.69	"ER membrane protein involved in regulation of OLE1 transcription, acts with homolog Mga2p; inactive ER form dimerizes and one subunit is then activated by ubiquitin/proteasome-dependent processing followed by nuclear targeting
"	YAR050W, YBL008W, YBR099C, YBR167C, YBR168W, YBR229C, YCR018C-A, YCR019W, YCR096C, YDL068W, YDL071C, YDL146W, YDR034C-A, YDR040C, YDR041W, YDR042C, YDR084C, YDR086C, YDR144C, YDR145W, YDR210W-D, YDR245W, YDR261C, YDR278C, YDR322C-A, YDR323C, YDR473C, YDR495C, YDR520C, YER002W, YER044C-A, YER135C, YER189W, YER190W, YFR002W, YGL001C, YGR071C, YGR072W, YGR218W, YGR273C, YHR004C, YHR043C, YHR085W, YHR182W, YIR005W, YJL030W, YJL031C, YJL175W, YJL191W, YJL192C, YJL203W, YJL204C, YJR011C, YJR037W, YJR051W, YKL169C, YKL177W, YKL179C, YKR004C, YKR009C, YLR011W, YLR023C, YLR047C, YLR048W, YML031W, YMR125W, YMR178W, YMR193W, YMR194W, YMR258C, YNL001W, YNL002C, YNL050C, YOL003C, YOL079W, YOL115W, YOL159C, YOL160W, YOR058C, YOR148C, YPL051W, YPL199C, YPL216W, YPL217C, YPR104C, YPR135W	YKL020C, YGL039W, YKL043W, YOR377W, YPL021W, YJR116W, YBR067C, YIR033W, YDR275W, YIL124W, YNR071C, YOR074C, YJR151C, YOR357C, YBR101C, YOR298C-A, YNL310C, YKR024C, YNL065W, YDR210W, YOL032W, YDR209C, YJL038C, YKL001C, YOR367W, YMR300C, YNR047W, YPL126W, YKL114C, YDR274C, YOR027W, YGL255W, YBR244W, YMR246W, YPL012W, YDL025C, YIL042C, YOL101C, YOR340C	FZF1	"A | 0.594 0.988 0.883 0.835 0.029 0.004 0.677 0.965 
C | 0.001 0.001 0.001 0.001 0.129 0.464 0.132 0.001 
G | 0.404 0.010 0.084 0.001 0.002 0.230 0.070 0.033 
T | 0.001 0.001 0.032 0.163 0.840 0.301 0.121 0.001 
"
SRD1	YCR018C	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	AGATCTACA	0.1509376	8.79	13.0535	10.89	"Protein involved in the processing of pre-rRNA to mature rRNA; contains a C2/C2 zinc finger motif; srd1 mutation suppresses defects caused by the rrp1-1 mutation
"	YAL022C, YBL023C, YBR012W-A, YBR012W-B, YBR099C, YBR167C, YBR168W, YDL192W, YDL206W, YDL236W, YDR245W, YDR282C, YDR473C, YDR484W, YER049W, YFR017C, YGL192W, YGL194C, YGL214W, YGL216W, YGL219C, YGR166W, YGR220C, YGR277C, YGR278W, YHR072W, YHR072W-A, YHR138C, YIL015C-A, YJR033C, YJR034W, YJR054W, YJR100C, YKR056W, YLL032C, YLR261C, YLR262C, YLR372W, YLR409C, YLR410W, YLR453C, YLR454W, YML106W, YML107C, YMR187C, YMR257C, YNL009W, YNL012W, YNL013C, YNR050C, YOR005C, YOR102W, YOR138C, YOR140W, YPL034W, YPL146C, YPL251W, YPL253C	No Data	None	"A | 0.720 0.020 0.970 0.050 0.010 0.010 0.930 0.010 0.650 
C | 0.010 0.010 0.010 0.010 0.970 0.020 0.040 0.960 0.080 
G | 0.260 0.960 0.010 0.010 0.010 0.010 0.020 0.010 0.190 
T | 0.010 0.010 0.010 0.930 0.010 0.960 0.010 0.020 0.080 
"
STB1	YNL309W	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	AAACGCGAAA	6.140158e-13	7.72	8.66283	10.1	"Protein with a role in regulation of MBF-specific transcription at Start, phosphorylated by Cln-Cdc28p kinases in vitro; unphosphorylated form binds Swi6p and binding is required for Stb1p function; expression is cell-cycle regulated
"	YAL022C, YBR057C, YBR060C, YBR147W, YBR294W, YCR064C, YCR065W, YDR309C, YDR366C, YDR368W, YDR451C, YDR452W, YDR500C, YDR501W, YDR511W, YEL040W, YER083C, YFL059W, YFL060C, YFR010W, YFR011C, YFR017C, YFR043C, YGR063C, YGR109C, YGR109W-A, YGR109W-B, YGR221C, YGR277C, YGR278W, YHR061C, YHR138C, YHR149C, YHR150W, YHR153C, YHR154W, YIL040W, YIL066C, YIL082W, YIL083C, YIL140W, YIL141W, YJL140W, YJL141C, YJL142C, YJL188C, YKL096W-A, YKL097C, YKL142W, YKR022C, YKR023W, YLR251W, YLR252W, YLR342W, YML038C, YML041C, YMR179W, YMR199W, YMR306C-A, YMR307W, YNL289W, YNL300W, YNL301C, YOL007C, YOR138C, YOR140W, YOR246C, YOR247W, YOR248W, YOR294W, YOR372C, YOR373W, YPL001W, YPL002C, YPL045W, YPL046C, YPL047W, YPL051W, YPL056C, YPL097W, YPL098C, YPL163C, YPL184C, YPL251W, YPL253C, YPL255W, YPL256C, YPR044C, YPR047W	YDR034W-B, YDR008C, YER143W, YER145C, YGL169W, YKR073C, YKR075C, YMR010W, YMR045C, YOR192C-A, YAL068C, YNL207W, YNL275W, YPL015C, YPL017C, YOR381W, YPL021W, YHL047C, YNR056C, YPL240C, YGL010W, YMR189W, YNL240C, YPL016W, YOR382W, YDL035C, YDR128W, YDR527W, YLL028W, YLR374C, YOL136C, YOR285W, YOR347C, YPL270W, YBR289W, YER028C, YBR129C, YHR024C, YLL027W, YKR104W, YOR316C, YDL191W, YDR281C, YLR183C, YMR315W, YMR316C-B, YBR010W, YOR203W, YOR389W, YDR147W, YCL064C, YJR061W, YOR202W, YJR148W, YDL075W, YHR120W, YHR155W, YDL009C, YFR013W, YJL217W, YNL309W, YNL311C, YPL154C, YBR101C, YBR105C, YDR534C, YGR036C, YMR138W, YOL143C, YOR298C-A, YBR296C, YMR317W, YMR321C, YNL310C, YER060W, YDR084C, YDR414C, YFL001W, YJR096W, YKR093W, YLR232W, YNL065W, YOL002C, YPL257W-A, YDR345C, YBR175W, YBR207W, YGL055W, YKL096W, YOR049C, YOR081C, YOR019W, YBR088C, YAR029W, YDL115C, YDR209C, YGL058W, YFR053C, YGR137W, YGR019W, YHR037W, YOL158C, YOR383C, YBR269C, YDL238C, YDL210W, YGR200C, YKL153W, YLR136C, YML070W, YMR300C, YMR304C-A, YDL049C, YDR481C, YFL060C, YIR012W, YLL012W, YOR301W, YPR135W, YBL042C, YLR167W, YML069W, YDR090C, YHR018C, YHL040C, YJR074W, YLR299W, YDL088C, YEL065W, YHR170W, YJL079C, YKL103C, YLR050C, YHR013C, YMR062C, YMR034C, YMR007W, YBR244W, YJL076W, YDR122W, YLR180W, YBR089W, YOR306C, YNL007C, YNL324W, YPL169C	ABF1, FKH1, FKH2, MBP1, MET28, RDR1, RDS1, SKN7, STB2, STB3, SUT1, SWI4, SWI6	"A | 0.539 0.597 0.683 0.043 0.062 0.080 0.133 0.861 0.739 0.558 
C | 0.199 0.012 0.050 0.811 0.019 0.876 0.243 0.028 0.081 0.107 
G | 0.229 0.315 0.114 0.055 0.905 0.020 0.548 0.089 0.076 0.099 
T | 0.033 0.076 0.153 0.091 0.014 0.024 0.076 0.022 0.104 0.236 
"
STB2	YMR053C	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	CGGGTAAA	0.01686612	6.01	11.5644	9.85	"Protein that interacts with Sin3p in a two-hybrid assay and is part of a large protein complex with Sin3p and Stb1p
"	YAL016W, YAL062W, YAR009C, YBR109C, YBR110W, YBR185C, YBR186W, YBR204C, YBR205W, YBR206W, YBR214W, YCL002C, YCL006C, YCL007C, YCL008C, YCL009C, YCL010C, YCR002C, YCR004C, YCR005C, YCR006C, YCR008W, YCR012W, YDL091C, YDL092W, YDL094C, YDL108W, YDL109C, YDL224C, YDR056C, YDR057W, YDR075W, YDR080W, YDR136C, YDR138W, YDR151C, YDR152W, YDR210W-C, YDR210W-D, YDR276C, YDR279W, YDR286C, YDR287W, YDR318W, YDR322W, YDR370C, YDR371W, YEL076W-C, YEL077C, YER044C, YER134C, YER138C, YER189W, YER190W, YFL066C, YFL067W, YFR007W, YGR038C-A, YGR126W, YGR184C, YGR187C, YGR188C, YHL021C, YHL050C, YHR028C, YHR041C, YHR042W, YIL048W, YIL075C, YIL100W, YIL101C, YIL136W, YIL137C, YJR010C-A, YJR088C, YJR089W, YJR098C, YJR099W, YJR108W, YKL009W, YKL010C, YKL071W, YKL177W, YKL179C, YKR003W, YKR065C, YKR094C, YKR095W, YLL014W, YLL015W, YLR023C, YLR083C, YLR092W, YLR199C, YLR200W, YLR269C, YLR271W, YLR373C, YLR375W, YLR412W, YLR418C, YLR419W, YLR428C, YLR430W, YML002W, YML072C, YMR043W, YMR125W, YMR283C, YNL021W, YNL022C, YNL129W, YNL130C, YNL136W, YNL137C, YNL210W, YNL211C, YNR028W, YNR054C, YOL042W, YOL043C, YOL083W, YOR023C, YOR024W, YOR025W, YOR115C, YOR263C, YOR265W, YOR323C, YOR325W, YOR353C, YOR365C, YOR367W, YOR368W, YPL150W, YPL151C, YPL194W, YPL204W, YPL206C, YPR095C, YPR118W, YPR204W	YER147C, YJR052W, YDR222W, YKR076W, YDR247W, YDR189W, YPL014W, YDR494W, YFL013W-A, YKL014C, YJR149W, YOL136C, YGR250C, YML027W, YMR288W, YJL099W, YLL002W, YMR104C, YNL116W, YDR279W, YLR183C, YPL077C, YCR021C, YKL051W, YKL082C, YER152C, YMR023C, YJR148W, YDL133W, YJL088W, YLR438W, YMR199W, YLR348C, YMR145C, YBR265W, YFL021W, YIR035C, YLR375W, YLR349W, YOR354C, YER064C, YNL312W, YNL065W, YOL058W, YOL002C, YGL055W, YGR138C, YLR416C, YNL289W, YHR007C, YMR054W, YGR139W, YPL061W, YDL048C, YHR037W, YIR019C, YOR367W, YFL023W, YPR061C, YBR054W, YHR018C, YLR297W, YBR217W, YBR021W, YBR055C, YIL135C, YIL137C, YMR034C, YLR049C, YMR181C, YMR276W, YOL101C	MBP1, STB1, STB3, SWI4, SWI6	"A | 0.029 0.001 0.001 0.001 0.059 0.939 0.852 0.353 
C | 0.941 0.001 0.264 0.001 0.088 0.001 0.059 0.265 
G | 0.001 0.997 0.734 0.939 0.001 0.001 0.088 0.235 
T | 0.029 0.001 0.001 0.059 0.852 0.059 0.001 0.147 
"
STB3	YDR169C	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	GTCCAAAATTTTTCACT		11.54	13.078	15.36	"Ribosomal RNA processing element (RRPE)-binding protein involved in the glucose-induced transition from quiescence to growth; restricted to nucleus in quiescent cells, released into cytoplasm after glucose repletion; binds Sin3p
"	No Data	YNL017C, YPL016W, YPR138C, YLL034C, YBR093C, YFR006W, YOR298W, YDR169C, YAR071W, YHL028W, YIL162W, YJR096W, YDR175C, YMR117C, YNL138W	ABF1, DOT6, EDS1, GCN4, MBP1, REB1, STB1, STB2, SWI4, SWI6, TOD6, XBP1	"A | 0.099 0.170 0.180 0.190 0.510 0.550 0.772 0.500 0.100 0.050 0.010 0.010 0.010 0.010 0.950 0.150 0.130 
C | 0.168 0.170 0.420 0.380 0.060 0.120 0.040 0.030 0.010 0.010 0.010 0.010 0.060 0.970 0.010 0.590 0.120 
G | 0.545 0.200 0.060 0.110 0.190 0.150 0.069 0.030 0.010 0.010 0.010 0.020 0.020 0.010 0.030 0.080 0.140 
T | 0.188 0.460 0.340 0.320 0.240 0.180 0.119 0.440 0.880 0.930 0.970 0.960 0.910 0.010 0.010 0.180 0.610 
"
STB4	YMR019W	Pachkov et al	http://www.ncbi.nlm.nih.gov/pubmed/17130146	TCGGTCCGA	4.934034e-10	11.54	15.4522	12.31	"Protein that binds Sin3p in a two-hybrid assay; contains a Zn(II)2Cys6 zinc finger domain characteristic of DNA-binding proteins; computational analysis suggests a role in regulation of expression of genes encoding transporters
"	YAL007C, YAR007C, YAR008W, YAR009C, YAR027W, YBL050W, YBL051C, YBR046C, YBR047W, YBR065C, YBR095C, YBR096W, YBR120C, YBR222C, YBR224W, YBR225W, YBR232C, YBR256C, YBR257W, YBR292C, YCR105W, YDL017W, YDL018C, YDL057W, YDL073W, YDL074C, YDR089W, YDR090C, YDR294C, YDR318W, YDR322C-A, YDR323C, YDR372C, YDR373W, YDR440W, YDR537C, YDR539W, YEL002C, YEL020C, YER066C-A, YER068W, YER138C, YER181C, YER183C, YFR041C, YFR042W, YGL137W, YGL138C, YGL156W, YGR017W, YGR094W, YGR289C, YHL038C, YHR068W, YHR084W, YIL035C, YIL048W, YIL166C, YJL003W, YJL004C, YJL023C, YJL094C, YJL193W, YJL195C, YJR098C, YJR099W, YJR154W, YKL135C, YKL202W, YKL203C, YLL055W, YLL056C, YLL057C, YLL058W, YLL059C, YLL060C, YLL061W, YLL062C, YLR199C, YLR200W, YLR273C, YLR274W, YLR330W, YML036W, YML037C, YMR031C, YMR032W, YMR034C, YMR035W, YNL082W, YNL083W, YNL084C, YNL117W, YNL118C, YNL272C, YNR011C, YNR012W, YNR054C, YOL105C, YOR058C, YOR112W, YOR115C, YOR215C, YOR297C, YOR298W, YPL076W, YPL077C, YPL215W, YPL243W, YPL244C, YPR021C, YPR082C, YPR083W, YPR107C, YPR108W, YPR128C, YPR129W	YHR146W, YLR461W, YMR042W, YAL001C, YBR222C, YGR151C, YPL016W, YBR093C, YBR129C, YDR281C, YOR229W, YEL008W, YMR023C, YEL020C, YLR099C, YFL048C, YPL254W, YNL289W, YMR035W, YMR034C, YFR001W, YBL051C	ARG81, RDS2, SUT2	"A | 0.001 0.116 0.106 0.446 0.001 0.001 0.001 0.001 0.965 
C | 0.079 0.812 0.001 0.001 0.284 0.997 0.997 0.001 0.001 
G | 0.001 0.068 0.889 0.552 0.001 0.001 0.001 0.997 0.033 
T | 0.919 0.004 0.004 0.001 0.714 0.001 0.001 0.001 0.001 
"
STB5	YHR178W	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	CGGTGTTATA	2.959761e-16	8.03	10.776	10.97	"Transcription factor, involved in regulating multidrug resistance and oxidative stress response; forms a heterodimer with Pdr1p; contains a Zn(II)2Cys6 zinc finger domain that interacts with a pleiotropic drug resistance element in vitro
"	YAR009C, YBL018C, YBR156C, YBR185C, YBR186W, YBR210W, YBR281C, YBR282W, YCR030C, YDL049C, YDL050C, YDL091C, YDL108W, YDL109C, YDL235C, YDR010C, YDR011W, YDR084C, YDR164C, YDR165W, YDR179C, YDR179W-A, YDR210W-D, YDR212W, YDR219C, YDR221W, YDR231C, YDR232W, YDR248C, YDR279W, YDR286C, YDR287W, YDR294C, YDR526C, YEL041W, YER138C, YER172C, YER173W, YFR007W, YGR022C, YGR093W, YGR150C, YGR218W, YGR289C, YHR028C, YHR123W, YHR155W, YHR156C, YHR157W, YHR161C, YHR162W, YHR163W, YHR178W, YHR183W, YHR184W, YIL159W, YIL160C, YJL008C, YJL193W, YJL195C, YJL216C, YJR088C, YJR089W, YJR098C, YJR099W, YJR153W, YKL014C, YKL077W, YKL177W, YKL179C, YLR011W, YLR152C, YLR199C, YLR200W, YLR269C, YLR271W, YLR354C, YLR401C, YLR402W, YMR156C, YMR272C, YMR315W, YNL126W, YNL273W, YNL274C, YOL041C, YOR074C, YOR075W, YOR086C, YOR087W, YOR088W, YOR166C, YOR214C, YOR251C, YOR252W, YOR256C, YOR257W, YOR353C, YPL061W, YPL062W, YPL113C, YPR016C, YPR073C, YPR074C, YPR076W	YCR012W, YCR040W, YER178W, YGL199C, YGR282C, YKR012C, YML112W, YMR046W-A, YOL013W-A, YPL180W, YBR187W, YDL128W, YDL131W, YDR192C, YGL039W, YGL009C, YHR174W, YHR178W, YLR056W, YBR031W, YCR013C, YDR034C-A, YDR365W-B, YDR367W, YGL198W, YJR015W, YKR038C, YKR042W, YKR013W, YML113W, YCR097W-A, YGR122C-A, YHR142W, YHR143W-A, YHR145C, YDR158W, YDR529C, YHR025W, YIR028W, YIR034C, YJR116W, YLR340W, YLR372W, YOR351C, YPL187W, YGR214W, YHR208W, YML085C, YHR183W, YBR091C, YBR093C, YBR067C, YDR461W, YHR021C, YHR026W, YJL015C, YJR115W, YJR117W, YLR339C, YNL146W, YPR015C, YCL018W, YDR340W, YIL015W, YML055W, YNL300W, YBR012C, YBR012W-B, YDR012W, YLR287C-A, YNL058C, YOR229W, YDL133C-A, YDR230W, YHR123W, YJL121C, YLR439W, YLR410W-B, YMR202W, YNL279W, YCR018C-A, YER154W, YNL055C, YNL057W, YNL092W, YPL246C, YJR148W, YAL012W, YBR196C, YER001W, YGR161W-B, YOR390W, YDR502C, YFL018C, YLR380W, YOL144W, YOL086C, YBR265W, YDL198C, YGR192C, YGR256W, YKL178C, YFL014W, YCR088W, YLR343W, YMR083W, YOL143C, YPR027C, YBL032W, YJL158C, YKL175W, YKL177W, YCR059C, YOR239W, YPL252C, YIL114C, YJL097W, YLR040C, YLR420W, YOR085W, YOR393W, YPL031C, YCL066W, YCR053W, YKR086W, YML126C, YNL066W, YNL037C, YOR210W, YPL251W, YAR029W, YJL134W, YKL120W, YLR041W, YDL015C, YCR097W, YDL021W, YFL026W, YHR072W-A, YKL032C, YLR354C, YOL126C, YGL089C, YMR272C, YBR145W, YFL023W, YNL190W, YPR002C-A, YJR004C, YKL216W, YNR044W, YNL322C, YPL163C, YGL225W, YKR034W, YLR303W, YOR247W, YAL062W, YEL038W, YGR172C, YHR141C, YML019W, YLR459W, YOR063W, YBL107W-A, YLR302C, YNL045W, YOR248W, YPL257W-B, YGL032C, YLR421C, YMR215W, YLR334C, YMR158C-B, YOL134C, YOR375C, YOR034C, YCL009C, YDL182W, YDL184C, YJR009C, YKL164C, YCR102C, YDR487C, YDR519W, YNL198C, YDR365C, YER073W, YOR152C	LYS14, MET28, MIG3, NHP6A, NHP6B, PDR8, RDS2, RTG3	"A | 0.042 0.040 0.058 0.353 0.044 0.124 0.015 0.927 0.165 0.567 
C | 0.892 0.063 0.005 0.083 0.255 0.056 0.008 0.005 0.080 0.063 
G | 0.005 0.887 0.929 0.087 0.668 0.021 0.034 0.005 0.040 0.169 
T | 0.061 0.010 0.008 0.477 0.033 0.799 0.943 0.063 0.715 0.201 
"
STE12	YHR084W	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	TGAAACA	2.076948e-25	7.55	10.9316	8.72	"Transcription factor that is activated by a MAP kinase signaling cascade, activates genes involved in mating or pseudohyphal/invasive growth pathways; cooperates with Tec1p transcription factor to regulate genes specific for invasive growth
"	YAL002W, YAL028W, YAL029C, YAR014C, YAR015W, YAR027W, YBL004W, YBL016W, YBL017C, YBR011C, YBR083W, YCL027W, YCL055W, YCL056C, YCR017C, YCR018C-A, YCR019W, YCR026C, YCR027C, YCR089W, YDL013W, YDL127W, YDL128W, YDR042C, YDR085C, YDR098C-A, YDR098C-B, YDR169C, YDR210W, YDR240C, YDR281C, YDR309C, YDR316W-A, YDR316W-B, YDR317W, YDR417C, YDR419W, YDR461W, YER159C-A, YER160C, YFL026W, YFL027C, YFL039C, YFL049W, YFL050C, YFR023W, YGL032C, YGL050W, YGL062W, YGL067W, YGL069C, YGR013W, YGR014W, YGR038C-A, YGR038C-B, YGR163W, YGR164W, YGR189C, YGR218W, YGR221C, YHL009W-A, YHL009W-B, YHR005C, YHR072W, YHR072W-A, YHR079C, YHR082C, YHR083W, YHR084W, YIL015W, YIL036W, YIL037C, YIL082W, YIL083C, YIL123W, YJL060W, YJL148W, YJL186W, YJL187C, YKL095W, YKL096W, YKL189W, YKL209C, YKL220C, YKR040C, YKR041W, YKR042W, YKR089C, YKR090W, YKR091W, YLR105C, YLR452C, YML046W, YML047C, YML068W, YML124C, YMR013C, YMR065W, YMR119W, YMR119W-A, YMR197C, YMR198W, YMR199W, YMR204C, YMR232W, YNL025C, YNL043C, YNL145W, YNL192W, YNL279W, YNL280C, YNL289W, YNL331C, YNR044W, YOR048C, YOR086C, YOR092W, YOR236W, YOR246C, YOR247W, YOR248W, YOR343C, YOR343C-A, YOR343C-B, YPL146C, YPL156C, YPL192C, YPL198W, YPR002C-A, YPR135W	No Data	LYS14	"A | 0.010 0.010 0.970 0.970 0.970 0.010 0.800 
C | 0.010 0.010 0.010 0.010 0.010 0.970 0.030 
G | 0.010 0.970 0.010 0.010 0.010 0.010 0.140 
T | 0.970 0.010 0.010 0.010 0.010 0.010 0.030 
"
STP1	YDR463W, SSY2, BAP1	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	TGCGGCTC	0.0003755594	9.41	11.8934	10.12	"Transcription factor, undergoes proteolytic processing by SPS (Ssy1p-Ptr3p-Ssy5p)-sensor component Ssy5p in response to extracellular amino acids; activates transcription of amino acid permease genes and may have a role in tRNA processing
"	YAR002W, YBR025C, YBR099C, YCL024W, YCL025C, YCL065W, YCL066W, YCL067C, YDL041W, YDL043C, YDL146W, YDL152W, YDR046C, YDR047W, YDR048C, YDR098C-A, YDR098C-B, YDR179C, YDR179W-A, YDR210W-D, YDR494W, YDR508C, YDR510W, YDR512C, YEL003W, YER007C-A, YGR040W, YGR055W, YGR225W, YGR256W, YHR011W, YHR181W, YJL007C, YJR011C, YKL139W, YKL169C, YLR094C, YLR105C, YLR345W, YMR193W, YMR258C, YNL260C, YNR050C, YOL023W, YOL125W, YOL126C, YOR058C, YOR273C, YOR274W, YPL251W, YPL253C, YPL265W	YGR278W, YIL116W, YLR248W, YML114C, YML116W, YNL052W, YDL128W, YDR222W, YEL046C, YGL039W, YGL009C, YKL043W, YLR092W, YLR094C, YMR226C, YNL241C, YNL277W, YOR065W, YPL017C, YOR381W, YPL019C, YPL021W, YBR005W, YGL166W, YHL047C, YKR013W, YMR042W, YNR056C, YOL016C, YOR220W, YOR194C, YOR226C, YGL038C, YGR151C, YGR157W, YHR112C, YLR089C, YNL276C, YOR066W, YPL018W, YOR382W, YBR068C, YFL015C, YGR033C, YHR053C, YHR055C, YOR317W, YDR282C, YER028C, YHR208W, YKL141W, YML056C, YML027W, YMR316W, YNR028W, YBR093C, YBR129C, YDR463W, YLL061W, YLL002W, YMR070W, YMR072W, YMR102C, YMR136W, YNL146W, YOR316C, YPL265W, YDR309C, YDR281C, YER052C, YIL051C, YJL212C, YKL142W, YKL206C, YLR119W, YLR183C, YML055W, YNL300W, YNL336W, YOR160W, YOR132W, YBR010W, YBR012C, YDR072C, YIL118W, YIL124W, YLR257W, YNL089C, YNL058C, YNL030W, YNL088W, YDL072C, YDR224C, YGR134W, YHR127W, YLR038C, YNL217W, YOR009W, YOR385W, YBR009C, YCL064C, YDR077W, YDR411C, YIL119C, YIL121W, YJR094C, YMR017W, YMR023C, YNL057W, YNL090W, YNR066C, YLR099C, YML007W, YDR502C, YLR350W, YMR113W, YOL118C, YPR028W, YBL003C, YBR265W, YCL030C, YDL196W, YDR284C, YHR215W, YKL147C, YKL149C, YLR128W, YLR194C, YMR262W, YMR293C, YMR320W, YMR264W, YMR294W-A, YNR035C, YPL088W, YPL092W, YPL124W, YPL156C, YBR069C, YBR099C, YBR071W, YBR101C, YBR135W, YBR105C, YDL012C, YDR105C, YDR534C, YGR012W, YHR032W, YJR119C, YJR150C, YLL037W, YMR110C, YMR144W, YOL111C, YOR298C-A, YPL273W, YLL023C, YAR071W, YBL002W, YBR264C, YER035W, YER064C, YGL080W, YGR219W, YKL150W, YML094W, YMR294W, YMR321C, YMR295C, YNL312W, YGL062W, YHL035C, YER157W, YKR024C, YMR055C, YOL064C, YDR345C, YBR207W, YDR264C, YJL101C, YJL071W, YLR416C, YMR210W, YNL289W, YDR047W, YER156C, YGR295C, YLR231C, YLR294C, YMR031C, YNL031C, YOL032W, YML097C, YAR027W, YDR209C, YGR137W, YKL120W, YDR112W, YDR146C, YDR516C, YHR071W, YIR017C, YKL001C, YLL015W, YOL158C, YOR302W, YOR367W, YOR383C, YGR234W, YLR136C, YMR298W, YMR272C, YMR304C-A, YDR174W, YKL002W, YOL119C, YBR302C, YDL241W, YDR297W, YIL033C, YJL196C, YLR199C, YNR042W, YNR044W, YNL322C, YPL127C, YPL129W, YPL163C, YER091C, YBR056W, YHR018C, YHL040C, YKR069W, YOR247W, YPL264C, YAL062W, YDL120W, YDR270W, YEL065W, YHR200W, YMR184W, YPR159W, YGL255W, YMR062C, YOR248W, YJR137C, YBR244W, YKL096W-A, YLR049C, YMR215W, YMR250W, YNL264C, YDL023C, YFR030W, YGR055W, YKL035W, YLR364W, YOR375C, YIL011W, YIL074C, YJR010W, YMR305C, YNR018W, YDL022W, YFL036W, YKL036C, YOR306C, YGR235C, YLR205C, YML107C, YML109W	CAT8, CRZ1, GIS1, GSM1, MIG1, MIG3, MSN4, NHP10, OAF1, PDR8, RGM1, RSC3, RSC30, RSF2, SUM1, SUT1, THI2, USV1, YER184C	"A | 0.043 0.303 0.001 0.001 0.087 0.001 0.043 0.043 
C | 0.304 0.001 0.997 0.001 0.001 0.997 0.001 0.348 
G | 0.130 0.695 0.001 0.955 0.911 0.001 0.435 0.261 
T | 0.523 0.001 0.001 0.043 0.001 0.001 0.521 0.348 
"
STP2	YHR006W	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	GGCGCCGCA	0.4187826	8.89	12.571	12.1	"Transcription factor, activated by proteolytic processing in response to signals from the SPS sensor system for external amino acids; activates transcription of amino acid permease genes
"	YBR040W, YBR081C, YBR130C, YBR131W, YBR195C, YBR291C, YCL024W, YCL025C, YCL065W, YCL066W, YCL067C, YCR039C, YCR040W, YCR041W, YDL041W, YDL043C, YDR048C, YDR064W, YDR065W, YDR098C, YDR102C, YDR103W, YDR215C, YDR216W, YDR383C, YFL002W-A, YFL002W-B, YFL017C, YGR024C, YGR025W, YGR026W, YGR091W, YGR199W, YGR205W, YHR125W, YHR173C, YHR174W, YJL024C, YJR052W, YJR055W, YKR074W, YLR003C, YLR143W, YLR303W, YLR334C, YLR374C, YLR379W, YLR397C, YML039W, YML040W, YML058C-A, YML069W, YNL070W, YNR009W, YOL077W-A, YOL078W, YOL079W, YOL080C, YOR192C-A, YOR192C-B, YPL266W	YHR146W, YPL177C, YGL038C, YPL016W, YBR067C, YBR129C, YFR006W, YNL180C, YBL058W, YER029C, YDR078C, YOR229W, YBR167C, YFR044C, YLR100W, YLR438C-A, YOR043W, YDR077W, YMR023C, YNR066C, YJR148W, YLR099C, YLR101C, YOR074C, YBR265W, YGR220C, YNR035C, YPL092W, YGR012W, YIR010W, YER064C, YGR219W, YKL150W, YMR295C, YGL062W, YHR006W, YKR093W, YNL065W, YKL096W, YNL289W, YPL062W, YDR019C, YLR231C, YLR294C, YNL098C, YAR018C, YER008C, YGR108W, YGR165W, YJL167W, YMR272C, YDR174W, YCL031C, YPL163C, YAL062W, YHR200W, YMR038C, YBR244W, YHR137W, YLR049C, YDL029W, YOR375C, YHR049C-A, YIL041W	MIG1, MIG3, NHP10, RSF2, SUT1	"A | 0.240 0.110 0.030 0.010 0.010 0.010 0.010 0.010 0.620 
C | 0.110 0.010 0.646 0.010 0.830 0.850 0.010 0.520 0.010 
G | 0.570 0.830 0.010 0.970 0.150 0.130 0.950 0.010 0.340 
T | 0.080 0.050 0.313 0.010 0.010 0.010 0.030 0.460 0.030 
"
STP3	YLR375W	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	TAGCGC		6.38	10.4224	8.51	"Zinc-finger protein of unknown function, possibly involved in pre-tRNA splicing and in uptake of branched-chain amino acids
"	No Data	No Data	MET31, OPI1	"A | 0.010 0.970 0.010 0.010 0.010 0.010 
C | 0.010 0.010 0.010 0.970 0.010 0.630 
G | 0.010 0.010 0.970 0.010 0.970 0.180 
T | 0.970 0.010 0.010 0.010 0.010 0.180 
"
STP4	YDL048C	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	GATAGCGC	0.0001612307	5.42	11.4671	10.25	"Protein containing a Kruppel-type zinc-finger domain; has similarity to Stp1p, Stp2p, and Stp3p
"	YAL040C, YAL063C, YBR083W, YCR018C-A, YCR019W, YDR278C, YDR495C, YDR543C, YDR544C, YDR545W, YER002W, YER011W, YER124C, YER125W, YER189W, YER190W, YGL071W, YGL072C, YGL074C, YGL258W, YHR160C, YIL159W, YIL160C, YIR020C, YJL148W, YJL184W, YJL185C, YKL131W, YKL133C, YKR009C, YKR097W, YLR008C, YLR009W, YLR135W, YLR463C, YLR465C, YLR467W, YMR011W, YMR017W, YMR018W, YMR193W, YNL337W, YOL084W, YOL085C, YOR019W, YOR032C, YOR058C, YOR236W, YOR327C, YOR328W, YPL141C, YPL230W, YPR184W	YDR222W, YDR034C-A, YDR365W-B, YGR122C-A, YHR145C, YOR038C, YPL014W, YLR374C, YMR103C, YGR250C, YML027W, YMR104C, YMR136W, YDR340W, YLR121C, YHR192W, YCR021C, YOL051W, YDL072C, YKL051W, YCR018C-A, YMR023C, YNL055C, YNR066C, YJR148W, YOR384W, YMR145C, YIL060W, YIR035C, YLR375W, YMR144W, YNL182C, YOL083W, YPL273W, YER064C, YPL087W, YOL002C, YOR273C, YGR138C, YLR414C, YOR019W, YNL033W, YGR139W, YHR068W, YNL160W, YPR002C-A, YBR054W, YLR297W, YDR055W, YER138W-A, YMR034C, YPL257W-B, YHR135C, YMR181C, YMR211W, YMR250W, YOR092W, YER050C, YNR019W	None	"A | 0.190 0.400 0.010 0.970 0.010 0.010 0.010 0.010 
C | 0.110 0.290 0.010 0.010 0.010 0.970 0.010 0.720 
G | 0.550 0.240 0.010 0.010 0.970 0.010 0.970 0.170 
T | 0.150 0.070 0.970 0.010 0.010 0.010 0.010 0.100 
"
SUM1	YDR310C	Pachkov et al	http://www.ncbi.nlm.nih.gov/pubmed/17130146	GTGTCACAAAA	5.242292e-42	9.62	13.3696	11.35	"Transcriptional repressor required for mitotic repression of middle sporulation-specific genes; also acts as general replication initiation factor; involved in telomere maintenance, chromatin silencing; regulated by pachytene checkpoint
"	YAL023C, YAL037W, YAR042W, YBR017C, YBR041W, YBR076W, YBR084W, YBR148W, YBR179C, YBR180W, YCL048W, YCL049C, YDL068W, YDL071C, YDL186W, YDL188C, YDL228C, YDR042C, YDR048C, YDR098C, YDR281C, YDR310C, YDR311W, YDR322W, YDR383C, YDR402C, YDR403W, YDR522C, YDR523C, YDR533C, YEL058W, YEL059C-A, YER105C, YER106W, YER187W, YER187W-A, YFL010W-A, YFL040W, YFR012W, YFR023W, YFR032C, YGL137W, YGL138C, YGL170C, YGR055W, YGR059W, YGR256W, YGR258C, YGR260W, YHR124W, YHR181W, YHR184W, YHR185C, YIR026C, YIR027C, YIR028W, YJL037W, YJL038C, YJL043W, YJL044C, YJR025C, YJR026W, YJR027W, YJR028W, YJR029W, YJR077C, YJR078W, YJR079W, YJR082C, YKL177W, YKL178C, YKL179C, YKR015C, YKR016W, YKR033C, YKR035W-A, YLL004W, YLL005C, YLR082C, YLR213C, YLR214W, YLR231C, YLR307W, YLR308W, YLR339C, YLR341W, YLR343W, YLR354C, YMR125W, YMR272C, YNL202W, YNL204C, YNL205C, YNL206C, YNL317W, YNL318C, YOL023W, YOL102C, YOR058C, YOR071C, YOR072W, YOR209C, YOR210W, YOR213C, YOR254C, YOR255W, YOR263C, YOR265W, YOR313C, YOR314W, YOR315W, YOR365C, YOR367W, YPL129W, YPL130W, YPL239W, YPL240C, YPL255W, YPL256C, YPL260W, YPR145W	YCL048W, YDR368W, YGL230C, YHL012W, YGR280C, YHL048W, YLR216C, YNL052W, YNR061C, YOL047C, YNR063W, YOR255W, YEL077C, YLR463C, YOR071C, YPL019C, YBR005W, YCR013C, YER142C, YJR079W, YLR213C, YLR273C, YOL014W, YOL016C, YOR190W, YOR220W, YOR192C, YPL206C, YJR078W, YBR161W, YFR032C, YLR089C, YLR462W, YPR077C, YBR126C, YFL012W, YGR059W, YHR053C, YHR055C, YLR307W, YOL136C, YOR345C, YOR347C, YPL187W, YBR287W, YIL050W, YKL141W, YKL172W, YLR120C, YMR254C, YMR316C-A, YMR316W, YNL333W, YNL335W, YNL305C, YPL146C, YBR063C, YBR093C, YFL040W, YHR054C, YIR027C, YLR308W, YLR341W, YMR106C, YNL110C, YOL073C, YOR346W, YBR250W, YDR281C, YER085C, YGL138C, YIL051C, YKL142W, YKL206C, YMR316C-B, YNL332W, YNL334C, YNL336W, YDR042C, YGR284C, YIL124W, YJR024C, YJR060W, YMR018W, YNR071C, YDL072C, YDR230W, YER002W, YGL015C, YHR184W, YLR068W, YMR232W, YNL279W, YOR011W, YOR385W, YPL027W, YDR310C, YCL064C, YDR077W, YDR411C, YER124C, YHL021C, YJR025C, YKR015C, YMR017W, YNL055C, YNL057W, YNR064C, YOL024W, YPL214C, YPL246C, YPL218W, YBR230C, YDR223W, YHR185C, YHR126C, YKL112W, YLR099C, YMR171C, YOR072W, YOR388C, YLL005C, YLR350W, YOR298W, YPR054W, YPL276W, YCL026C-A, YHR215W, YKL178C, YLR194C, YML066C, YMR294W-A, YNR035C, YPL156C, YBR071W, YDR105C, YDR534C, YFR012W, YGR012W, YJR119C, YJR156C, YLL039C, YLR343W, YLR375W, YMR110C, YMR083W, YOL143C, YOL083W, YOR298C-A, YPL275W, YAR071W, YBL002W, YBL032W, YDR319C, YER035W, YGL084C, YGR187C, YIL053W, YKL177W, YKL150W, YML092C, YMR317W, YMR295C, YNR034W, YNL312W, YPL149W, YPL087W, YER187W-A, YIL096C, YLR232W, YNL034W, YOL058W, YBR173C, YGR136W, YKL096W, YLR040C, YLR414C, YPL033C, YBL098W, YBR045C, YGR295C, YKR088C, YLR231C, YLR233C, YLR294C, YML126C, YML130C, YML132W, YNR072W, YOL032W, YOR270C, YAL018C, YAL022C, YEL060C, YFR047C, YGR137W, YLR041W, YOR052C, YPL067C, YPR154W, YFL059W, YFR023W, YIR044C, YJL038C, YMR120C, YOL152W, YOR365C, YGR260W, YKL153W, YLR136C, YMR298W, YMR304C-A, YNL319W, YPL130W, YIR043C, YNL128W, YNL160W, YOL091W, YOR364W, YOR366W, YBR302C, YGR259C, YGR197C, YJL196C, YKL152C, YKL216W, YNL318C, YPL095C, YBL107C, YBR056W, YGL225W, YHR018C, YKR034W, YLR270W, YAR042W, YAR053W, YEL069C, YGL037C, YLR082C, YLR054C, YGL255W, YHL003C, YIL139C, YJR107W, YLR237W, YLR269C, YOR214C, YPL196W, YBR180W, YGR145W, YLR049C, YMR243C, YMR244W, YMR215W, YPL012W, YPL044C, YBR148W, YDL023C, YJL043W, YKL035W, YJR139C, YLR328W, YMR095C, YMR097C, YNL203C, YNL205C, YOL160W, YOL132W, YOR339C, YML047C, YML048W-A, YBR149W, YBR089W, YDL022W, YDR185C, YFL062W, YKL036C, YLR359W, YMR094W, YMR096W, YNL204C, YOL129W, YOL101C, YOL163W, YER073W, YER106W, YGR273C, YNL007C, YNR050C	ABF1, MBP1, MET28, SKO1, STP1	"A | 0.391 0.004 0.001 0.428 0.001 0.920 0.003 0.479 0.988 0.972 0.528 
C | 0.052 0.487 0.001 0.008 0.987 0.018 0.518 0.119 0.009 0.020 0.046 
G | 0.556 0.001 0.997 0.008 0.010 0.060 0.459 0.009 0.002 0.003 0.052 
T | 0.001 0.508 0.001 0.556 0.002 0.002 0.020 0.392 0.001 0.005 0.374 
"
SUT1	YGL162W	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	GCGGGGCCGG	3.263645e-21	8.79	10.343	12.28	"Transcription factor of the Zn[II]2Cys6 family involved in sterol uptake; involved in induction of hypoxic gene expression
"	YAL053W, YAL054C, YAL063C, YAL064W, YAR050W, YAR060C, YAR061W, YBL029W, YBL041W, YBL042C, YBL043W, YBL044W, YBL045C, YBL054W, YBL055C, YBR069C, YBR158W, YBR298C, YBR299W, YCR024C, YCR096C, YDL047W, YDL214C, YDL245C, YDL246C, YDR042C, YDR077W, YDR084C, YDR098C-A, YDR098C-B, YDR133C, YDR134C, YDR194C, YDR195W, YDR220C, YDR222W, YDR343C, YDR441C, YDR442W, YEL040W, YEL069C, YER013W, YER015W, YER044C, YER045C, YER145C, YER146W, YGL001C, YGL055W, YGL056C, YGL145W, YGL146C, YGL158W, YGL162W, YGL202W, YGR035C, YGR067C, YGR069W, YGR140W, YGR218W, YGR249W, YGR271W, YGR289C, YHL027W, YHR028C, YHR049W, YHR080C, YHR081W, YHR094C, YHR095W, YHR213W, YIL012W, YIL013C, YIL099W, YIL119C, YIL122W, YIL170W, YIL171W, YIL172C, YIR020C, YJL105W, YJL191W, YJL192C, YJL194W, YJL196C, YJL216C, YJR011C, YJR127C, YJR158W, YKL062W, YKL094W, YKL096W, YKL109W, YKL110C, YKL118W, YKR009C, YKR074W, YKR075C, YKR097W, YKR102W, YLL033W, YLL034C, YLL052C, YLL053C, YLR049C, YLR083C, YLR112W, YLR153C, YLR174W, YLR235C, YLR236C, YLR237W, YLR261C, YLR262C, YLR304C, YLR311C, YLR312C, YLR312W-A, YLR339C, YLR341W, YLR413W, YML116W, YMR011W, YMR016C, YMR019W, YMR037C, YMR056C, YMR070W, YMR081C, YMR135C, YMR136W, YMR279C, YNL038W, YNL117W, YNL118C, YNL178W, YNL179C, YNL180C, YNL231C, YOL121C, YOL156W, YOL157C, YOL159C, YOR049C, YOR050C, YOR082C, YOR084W, YOR098C, YOR099W, YOR107W, YOR136W, YOR153W, YOR161C, YOR178C, YOR318C, YOR319W, YPL026C, YPL062W, YPL156C, YPL177C, YPL188W, YPL200W, YPL201C, YPL220W, YPL230W, YPR006C, YPR016C, YPR065W, YPR148C, YPR151C, YPR192W, YPR198W	YOR065W, YMR189W, YPL016W, YLL034C, YOR317W, YML027W, YBR129C, YIR031C, YKR102W, YMR133W, YNL116W, YLR183C, YNL300W, YOR043W, YMR023C, YGR161C, YLR099C, YIR040C, YOR357C, YPR054W, YPL276W, YBR265W, YNR035C, YPL092W, YJR119C, YJR125C, YER064C, YNL312W, YIL100W, YNL065W, YLR042C, YNL289W, YDR019C, YPL222W, YOR367W, YDL242W, YNL322C, YPL127C, YPL163C, YCR069W, YHR018C, YLR297W, YOR247W, YHR200W, YPR159W, YBR244W, YLR049C, YBR152W, YFR026C, YKL035W, YLR019W, YMR276W, YHR043C, YHR073W, YJL013C, YMR155W, YGL162W	AFT2, CRZ1, CST6, GIS1, GSM1, HAP2, HAP4, HAP5, HMS1, IME1, MBP1, MET28, MIG1, MIG2, MIG3, MSN2, MSN4, NHP10, OAF1, PDR1, PDR3, PDR8, PHD1, RGM1, RGT1, RPH1, RPN4, RSC3, RSF2, STB1, STP1, STP2, SWI4, UME6, USV1, YER130C, YER184C	"A | 0.097 0.044 0.021 0.009 0.070 0.086 0.198 0.268 0.136 0.090 
C | 0.142 0.730 0.402 0.026 0.308 0.164 0.345 0.478 0.263 0.029 
G | 0.617 0.182 0.568 0.956 0.583 0.698 0.324 0.181 0.544 0.847 
T | 0.144 0.044 0.009 0.009 0.039 0.052 0.133 0.073 0.057 0.034 
"
SUT2	YPR009W	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	AAACTCCGAA	0.01688108	10.48	13.4989	11.56	"Putative transcription factor; multicopy suppressor of mutations that cause low activity of the cAMP/protein kinase A pathway; highly similar to Sut1p
"	YAR050W, YDL206W, YDR424C, YDR425W, YKR054C, YKR055W, YMR225C, YNL214W	YHR146W, YOR065W, YNR060W, YDL037C, YJR112W, YOR317W, YML027W, YMR314W, YFR006W, YNL180C, YBL058W, YLR183C, YNL300W, YIL124W, YML121W, YAL044C, YOR043W, YOR264W, YFR041C, YKL085W, YLR099C, YLR069C, YOR074C, YGR220C, YHR215W, YNR035C, YPL118W, YPL092W, YGR012W, YOR354C, YBR264C, YER064C, YGR253C, YMR263W, YNL310C, YKR093W, YNL065W, YKL096W, YNL289W, YPL031C, YPL066W, YLR294C, YNL098C, YNL100W, YGR139W, YNL290W, YPL004C, YOR367W, YPL163C, YBR026C, YLR297W, YGL255W, YMR034C, YOL038W, YHR137W, YLR079W, YLR049C, YDL029W, YBR149W, YOL101C, YPR009W, YNL007C	GSM1, MIG3, STB4, YER184C	"A | 0.520 0.940 0.960 0.010 0.010 0.010 0.010 0.010 0.790 0.520 
C | 0.090 0.010 0.010 0.700 0.020 0.970 0.970 0.010 0.020 0.080 
G | 0.290 0.010 0.010 0.280 0.010 0.010 0.010 0.970 0.170 0.260 
T | 0.100 0.040 0.020 0.010 0.960 0.010 0.010 0.010 0.020 0.140 
"
SWI4	YER111C, ART1	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	ACGCGAAAA	4.969284e-36	7.81	10.6482	10.04	"DNA binding component of the SBF complex (Swi4p-Swi6p), a transcriptional activator that in concert with MBF (Mbp1-Swi6p) regulates late G1-specific transcription of targets including cyclins and genes required for DNA synthesis and repair
"	YBL002W, YBL003C, YBL023C, YBL029W, YBR069C, YBR070C, YBR071W, YBR077C, YBR078W, YBR079C, YBR112C, YBR114W, YBR158W, YBR161W, YBR162C, YBR162W-A, YCR061W, YCR062W, YCR064C, YCR065W, YCR073C, YDL003W, YDL047W, YDL055C, YDL126C, YDL127W, YDL185W, YDL187C, YDL211C, YDL227C, YDR010C, YDR011W, YDR072C, YDR073W, YDR133C, YDR134C, YDR154C, YDR155C, YDR156W, YDR157W, YDR158W, YDR224C, YDR225W, YDR227W, YDR261C, YDR309C, YDR345C, YDR441C, YDR442W, YDR451C, YDR452W, YDR453C, YDR500C, YDR501W, YDR507C, YDR508C, YDR509W, YDR510W, YDR513W, YDR524C, YDR525W, YDR526C, YEL007W, YEL017C-A, YEL017W, YEL040W, YER001W, YER011W, YER070W, YER078C, YER079W, YER111C, YER112W, YER145C, YER146W, YER177W, YFR017C, YGL038C, YGL096W, YGL147C, YGL179C, YGL227W, YGL253W, YGR013W, YGR014W, YGR041W, YGR050C, YGR060W, YGR086C, YGR109C, YGR109W-A, YGR109W-B, YGR110W, YGR140W, YGR151C, YGR152C, YGR153W, YGR189C, YGR190C, YGR193C, YGR221C, YGR234W, YGR249W, YGR279C, YHL012W, YHL013C, YHR061C, YHR063C, YHR149C, YHR150W, YHR193C, YHR194W, YHR205W, YIL012W, YIL013C, YIL056W, YIL121W, YIL122W, YIL123W, YIR020C, YJL158C, YJL184W, YJL185C, YJL186W, YJL187C, YJL194W, YJL196C, YJR044C, YJR047C, YJR048W, YJR054W, YJR145C, YJR146W, YJR147W, YJR148W, YKL007W, YKL008C, YKL044W, YKL094W, YKL096W, YKL096W-A, YKL097C, YKL103C, YKL109W, YKL110C, YKL180W, YKR011C, YKR013W, YKR040C, YKR042W, YKR093W, YLL012W, YLL013C, YLR044C, YLR055C, YLR056W, YLR084C, YLR121C, YLR139C, YLR142W, YLR255C, YLR256W, YLR256W-A, YLR300W, YLR332W, YLR342W, YLR437C, YLR438W, YLR439W, YML007W, YML008C, YML026C, YML027W, YML052W, YML053C, YML100W, YML101C, YML102C-A, YMR006C, YMR007W, YMR016C, YMR017W, YMR037C, YMR070W, YMR135C, YMR136W, YMR144W, YMR145C, YMR179W, YMR195W, YMR199W, YMR261C, YMR262W, YMR279C, YMR304C-A, YMR305C, YMR306C-A, YMR306W, YMR307W, YMR308C, YNL178W, YNL231C, YNL289W, YNL295W, YNL297C, YNL298W, YNL300W, YNL301C, YNR016C, YNR017W, YNR018W, YNR044W, YOL011W, YOL012C, YOL019W, YOL113W, YOL114C, YOL154W, YOR138C, YOR140W, YOR178C, YOR246C, YOR247W, YOR248W, YOR315W, YOR344C, YOR372C, YOR373W, YOR378W, YPL016W, YPL017C, YPL024W, YPL025C, YPL056C, YPL081W, YPL082C, YPL124W, YPL126W, YPL127C, YPL163C, YPL177C, YPL230W, YPL267W, YPR009W, YPR013C, YPR035W, YPR119W, YPR120C, YPR149W, YPR158C-C, YPR158C-D, YPR159W	YBR004C, YBR006W, YER145C, YHL048W, YKR012C, YMR041C, YNL016W, YOL047C, YEL075C, YHR146W, YLR463C, YLR465C, YLR467W, YPL015C, YBR005W, YCL049C, YHL015W, YKR042W, YKR013W, YMR009W, YOL011W, YMR266W, YDL063C, YDL127W, YEL076C, YGR120C, YJL048C, YJL116C, YLR089C, YLR059C, YLR462W, YLR464W, YLR405W, YLR466W, YMR191W, YNL274C, YOR038C, YPL014W, YPL016W, YBR092C, YGR001C, YGR033C, YLL066C, YMR103C, YNL115C, YOR285W, YBR287W, YDR280W, YER053C, YGL071W, YGR248W, YGR250C, YML027W, YNL333W, YNR028W, YBR067C, YMR104C, YNL116W, YBL024W, YDR309C, YDR281C, YER029C, YGL076C, YGR213C, YIL051C, YJL144W, YLR121C, YMR251W-A, YMR315W, YNL300W, YNL332W, YNL336W, YPL111W, YPL081W, YBR010W, YBR012C, YCR050C, YLR252W, YMR020W, YNL030W, YBR169C, YGL053W, YKL051W, YMR228W, YOR009W, YOR043W, YOR385W, YBR009C, YCL064C, YER150W, YHL049C, YIL117C, YJR025C, YMR023C, YML100W, YDR225W, YER001W, YGR131W, YMR199W, YNL248C, YOR390W, YBR070C, YFR017C, YLR348C, YMR084W, YMR145C, YOL144W, YOR355W, YBR265W, YDL234C, YER038C, YJL159W, YKL149C, YPL088W, YPL122C, YGR008C, YIR035C, YIR010W, YJR156C, YLL067C, YLR349W, YOL143C, YOR354C, YBL032W, YCL025C, YBR296C, YDL201W, YDR346C, YER064C, YJL158C, YNR001C, YNR038W, YPL087W, YER189W, YJR070C, YKR061W, YKR093W, YML133C, YOL058W, YPL256C, YAR028W, YGR138C, YGR142W, YLR040C, YLR420W, YNL289W, YDR081C, YER158C, YER188W, YER190W, YGR295C, YKR056W, YLR258W, YML132W, YNL096C, YNL066W, YNR072W, YOL032W, YMR008C, YAR027W, YGR108W, YGR139W, YGR110W, YLR041W, YNL256W, YPL030W, YPL032C, YPL063W, YFL059W, YGR019W, YGR079W, YIR044C, YLR356W, YMR120C, YNL197C, YCL038C, YGR234W, YLR142W, YML070W, YDR174W, YFR022W, YIR043C, YLR355C, YMR146C, YNL126W, YNL160W, YNL192W, YBR302C, YHR218W, YJL225C, YJL196C, YKL216W, YLR197W, YNR009W, YNR044W, YPL163C, YBR054W, YBL111C, YBR028C, YLR297W, YLR299W, YMR006C, YNL075W, YOR247W, YAR033W, YAL062W, YDL124W, YJL079C, YKL103C, YLR050C, YLR054C, YLR455W, YCR007C, YDR055W, YGL255W, YLR300W, YMR001C, YMR062C, YMR034C, YMR007W, YOL007C, YOR248W, YPL198W, YGR149W, YHR135C, YKL096W-A, YLR452C, YMR250W, YFR028C, YLR366W, YMR093W, YCL040W, YCL042W, YGL101W, YLR178C, YML052W, YFL062W, YFL064C, YFL068W, YHR104W, YHR108W, YLR327C, YLR359W, YOL097C, YOR338W, YPR041W, YDR303C, YJL172W, YKL163W, YMR277W, YNR019W, YNR052C	ABF1, FKH1, FKH2, MBP1, MET28, RDS1, REB1, RTG3, SKN7, STB1, STB2, STB3, SUT1, SWI6	"A | 0.504 0.047 0.351 0.039 0.041 0.864 0.975 0.965 0.437 
C | 0.181 0.922 0.001 0.907 0.067 0.001 0.001 0.018 0.113 
G | 0.136 0.025 0.643 0.016 0.860 0.092 0.023 0.002 0.178 
T | 0.179 0.006 0.005 0.038 0.032 0.043 0.001 0.015 0.272 
"
SWI5	YDR146C	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	TGCTGGT	4.545535e-08	4.79	11.2912	9.19	"Transcription factor that activates transcription of genes expressed at the M/G1 phase boundary and in G1 phase; localization to the nucleus occurs during G1 and appears to be regulated by phosphorylation by Cdc28p kinase
"	YAL017W, YAL018C, YAL022C, YAR009C, YBL048W, YBL049W, YBL069W, YBL071C, YBL108W, YBR040W, YBR058C-A, YBR059C, YBR070C, YBR071W, YBR083W, YBR097W, YBR157C, YBR158W, YBR190W, YBR191W, YBR230C, YDL030W, YDL032W, YDL035C, YDL112W, YDL113C, YDL114W, YDL115C, YDL117W, YDL119C, YDL127W, YDL173W, YDL174C, YDL179W, YDL223C, YDL224C, YDL225W, YDL226C, YDR054C, YDR055W, YDR112W, YDR154C, YDR155C, YDR156W, YDR157W, YDR158W, YDR164C, YDR165W, YDR210W-D, YDR212W, YDR345C, YDR397C, YDR398W, YDR418W, YDR543C, YEL069C, YEL073C, YEL076W-C, YEL077C, YER064C, YER078C, YER079W, YER138C, YER177W, YER189W, YER190W, YFL013W-A, YFL021W, YFL022C, YFL063W, YFL064C, YFL065C, YFR017C, YFR031C-A, YGL028C, YGL108C, YGL139W, YGL140C, YGL210W, YGL226C-A, YGL226W, YGL227W, YGR038C-B, YGR041W, YGR060W, YGR086C, YGR189C, YGR234W, YGR254W, YGR296W, YHL012W, YHL013C, YHR033W, YHR091C, YHR138C, YHR190W, YIL009W, YIL018W, YIL050W, YIL051C, YIL128W, YIL129C, YIL173W, YIL176C, YIR004W, YJL078C, YJL080C, YJL148W, YJL159W, YJL160C, YJL188C, YJL207C, YJL217W, YJL225C, YJR044C, YJR148W, YKL044W, YKL163W, YKL164C, YKL185W, YKL186C, YLL063C, YLR011W, YLR012C, YLR013W, YLR035C-A, YLR049C, YLR078C, YLR079W, YLR105C, YLR194C, YLR207W, YLR276C, YLR286C, YLR287C-A, YLR300W, YLR346C, YLR397C, YLR406C, YLR407W, YLR439W, YLR440C, YML100W, YML101C, YML102C-A, YML111W, YML125C, YML131W, YMR014W, YMR135W-A, YMR149W, YMR165C, YMR172C-A, YMR173W, YMR173W-A, YMR242C, YMR251W-A, YMR252C, YMR261C, YMR262W, YNL032W, YNL034W, YNL078W, YNL079C, YNL112W, YNL114C, YNL141W, YNL145W, YNL192W, YNL238W, YNL241C, YNL269W, YNL271C, YNL324W, YNL326C, YNL327W, YNL328C, YNL335W, YNL336W, YNL337W, YNR018W, YOR138C, YOR140W, YOR236W, YOR264W, YOR273C, YOR274W, YOR348C, YOR349W, YPL024W, YPL025C, YPL050C, YPL157W, YPL158C, YPL195W, YPL198W, YPL251W, YPL253C, YPL283C, YPR183W, YPR185W	YCR040W, YGR278W, YHL014C, YGR282C, YJR020W, YOR225W, YDL098C, YDL131W, YDR192C, YFR032C-A, YGL009C, YBR031W, YCR013C, YGR279C, YKR042W, YKR013W, YMR044W, YOR226C, YCR097W-A, YHR142W, YHR143W-A, YJL052W, YPR083W, YDL033C, YGR031W, YHR025W, YMR071C, YNL149C, YOR351C, YPL187W, YHR208W, YBR067C, YDR461W, YFR006W, YHR021C, YJR146W, YJR117W, YNL146W, YCL018W, YDL191W, YIL015W, YLR185W, YML055W, YJL131C, YLR287C-A, YDL133C-A, YDL136W, YMR230W, YOR045W, YBR011C, YER154W, YJR148W, YDL075W, YER001W, YEL021W, YKL081W, YDR502C, YOL144W, YBL062W, YGR192C, YKL209C, YKL178C, YLR343W, YLR349W, YNL150W, YOL143C, YCL027W, YIL027C, YKL177W, YOR170W, YHR010W, YKR093W, YLR291C, YLR262C-A, YLR234W, YOR239W, YGR140W, YLR040C, YLR420W, YCL066W, YDR447C, YHR005C-A, YIL163C, YOR210W, YKL120W, YLR041W, YCR097W, YFL026W, YHR072W-A, YKL032C, YLR388W, YOL126C, YGL089C, YBR145W, YGR044C, YNL162W, YPL281C, YJR004C, YKL216W, YNR044W, YGL225W, YLR303W, YOR247W, YER019C-A, YHR141C, YGL224C, YLR302C, YNL070W, YOR248W, YDL243C, YAR031W, YGL032C, YBR118W, YJR135W-A, YDL184C, YJR009C, YDL179W, YDL211C, YER073W, YGL098W, YML107C, YML081C-A, YOR182C, YPR190C, YPR176C, YPR180W	None	"A | 0.080 0.010 0.010 0.010 0.010 0.010 0.040 
C | 0.080 0.010 0.970 0.010 0.010 0.010 0.040 
G | 0.230 0.970 0.010 0.010 0.970 0.970 0.270 
T | 0.610 0.010 0.010 0.970 0.010 0.010 0.650 
"
SWI6	YLR182W, SDS11, PSL8	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	GACGCG	3.286313e-38	7.37	9.11729	8.47	"Transcription cofactor, forms complexes with DNA-binding proteins Swi4p and Mbp1p to regulate transcription at the G1/S transition; involved in meiotic gene expression; localization regulated by phosphorylation; potential Cdc28p substrate
"	YAL040C, YBL029W, YBR007C, YBR070C, YBR071W, YBR077C, YBR078W, YCL063W, YCL064C, YCR064C, YCR065W, YDL003W, YDL017W, YDL018C, YDL032W, YDL035C, YDL055C, YDL101C, YDL126C, YDL127W, YDL211C, YDL227C, YDR010C, YDR011W, YDR113C, YDR115W, YDR133C, YDR134C, YDR224C, YDR225W, YDR263C, YDR297W, YDR309C, YDR324C, YDR325W, YDR451C, YDR452W, YDR453C, YDR500C, YDR501W, YDR507C, YDR508C, YDR509W, YDR510W, YDR524C, YDR525W, YDR526C, YEL007W, YEL040W, YER001W, YER070W, YER078C, YER079W, YER094C, YER095W, YER111C, YER112W, YER145C, YER146W, YER177W, YFL013W-A, YFR017C, YGL038C, YGL179C, YGL239C, YGL253W, YGR013W, YGR014W, YGR041W, YGR109C, YGR109W-A, YGR109W-B, YGR110W, YGR111W, YGR140W, YGR151C, YGR152C, YGR153W, YGR180C, YGR188C, YGR189C, YGR221C, YGR249W, YGR279C, YHL028W, YHL029C, YHR002W, YHR061C, YHR143W, YHR149C, YHR150W, YHR151C, YHR152W, YHR193C, YHR194W, YIL026C, YIL056W, YIL121W, YIL123W, YIL159W, YIL160C, YJL045W, YJL092W, YJL093C, YJL115W, YJL116C, YJL148W, YJL158C, YJL184W, YJL185C, YJL186W, YJL187C, YJL194W, YJL196C, YJR044C, YJR054W, YJR091C, YJR092W, YJR145C, YJR146W, YJR147W, YJR148W, YKL007W, YKL008C, YKL044W, YKL066W, YKL067W, YKL096W, YKL096W-A, YKL097C, YKL112W, YKL113C, YKR011C, YKR013W, YKR040C, YKR042W, YLR055C, YLR056W, YLR084C, YLR103C, YLR104W, YLR105C, YLR110C, YLR111W, YLR300W, YLR332W, YLR342W, YLR437C, YLR438W, YLR439W, YML007W, YML008C, YML027W, YML100W, YML101C, YML102C-A, YMR016C, YMR017W, YMR070W, YMR076C, YMR122C, YMR135C, YMR136W, YMR144W, YMR165C, YMR179W, YMR199W, YMR215W, YMR261C, YMR262W, YMR279C, YMR304C-A, YMR305C, YMR306C-A, YMR306W, YMR307W, YMR308C, YNL231C, YNL241C, YNL273W, YNL274C, YNL289W, YNL298W, YNL300W, YNL301C, YNL312W, YNL313C, YNR009W, YNR016C, YNR018W, YNR044W, YOL011W, YOL012C, YOL113W, YOL114C, YOR042W, YOR074C, YOR075W, YOR138C, YOR140W, YOR236W, YOR246C, YOR247W, YOR248W, YOR315W, YOR344C, YOR372C, YOR373W, YOR378W, YPL024W, YPL025C, YPL056C, YPL081W, YPL082C, YPL126W, YPL127C, YPL163C, YPL230W, YPL255W, YPL256C, YPR009W, YPR075C, YPR119W, YPR120C, YPR145W, YPR151C, YPR158C-C, YPR158C-D, YPR159W, YPR185W	YDR368W, YER118C, YER178W, YJR048W, YOL017W, YBR187W, YEL046C, YKL043W, YKL045W, YKL049C, YLR400W, YLR461W, YLR432W, YCL049C, YER111C, YER140W, YER171W, YER142C, YER144C, YKR076W, YMR009W, YMR015C, YPL177C, YEL041W, YEL015W, YLR028C, YLR433C, YLR405W, YOR036W, YPL016W, YFL013W-A, YOR359W, YBR255W, YER053C, YER082C, YER055C, YER028C, YER086W, YER030W, YER087W, YGR250C, YLR182W, YML027W, YML058C-A, YNR030W, YNL307C, YDR127W, YDR159W, YDR461W, YDR499W, YDR530C, YNL142W, YNL146W, YNL116W, YOR086C, YBR256C, YDL161W, YER023W, YER052C, YER081W, YER083C, YER027C, YIL015W, YHR209W, YIL051C, YLR121C, YNL300W, YNL332W, YNL306W, YPL111W, YPL081W, YER042W, YBR012C, YDR380W, YER149C, YER123W, YIL120W, YIL156W, YMR020W, YNL024C, YOR201C, YPL245W, YER002W, YER004W, YER006W, YMR234W, YBL094C, YCL064C, YIL117C, YNL055C, YNR070W, YOR200W, YPL212C, YPL244C, YPL214C, YBR168W, YER001W, YEL020C, YEL053C, YER005W, YNL252C, YBR070C, YDL011C, YDR106W, YFL018C, YHR091C, YOL150C, YOR355W, YPR024W, YPL195W, YBR265W, YER092W, YER038C, YPL092W, YBR071W, YDR501W, YDR532C, YDR534C, YHR030C, YJR156C, YOL113W, YAR075W, YBL002W, YCL025C, YER031C, YER059W, YER037W, YGR257C, YHR216W, YJL158C, YMR317W, YPL091W, YIL130W, YNR075W, YPL257W-A, YDL084W, YEL058W, YKL096W, YLR447C, YER126C, YER156C, YER158C, YER188W, YLR294C, YNL096C, YPL251W, YPL226W, YMR008C, YEL059C-A, YEL029C, YEL060C, YLR103C, YLR448W, YMR173W-A, YPL061W, YPL032C, YPL063W, YPL004C, YGR079W, YMR120C, YBR273C, YER095W, YDR174W, YLR321C, YLR355C, YOL151W, YER094C, YER098W, YER044C, YJL196C, YKL216W, YKL218C, YLR203C, YNR044W, YPL127C, YPL163C, YBR028C, YHL004W, YLR297W, YLR299W, YOR247W, YAL062W, YEL036C, YEL038W, YEL040W, YJL079C, YLR054C, YLR455W, YDR055W, YER134C, YER163C, YER136W, YLR269C, YLR300W, YOL007C, YOR276W, YOR248W, YPL234C, YPL263C, YBR182C, YEL037C, YGL032C, YHR137W, YKL096W-A, YLR452C, YHR105W, YLL058W, YMR093W, YOL166C, YOR375C, YOR034C, YER048C, YER049W, YER107C, YNL014W, YFR027W, YGR086C, YLR327C, YLR363C, YNL166C, YOL161C, YOL101C, YOR338W, YPR069C, YPR011C, YER073W, YER050C, YER079W, YPL103C	ABF1, ASH1, FKH1, HAC1, MBP1, MCM1, MET28, NDD1, REB1, RTG3, STB1, STB2, STB3, SWI4, YDR026C	"A | 0.335 0.884 0.019 0.226 0.001 0.170 
C | 0.034 0.017 0.899 0.001 0.981 0.001 
G | 0.567 0.087 0.001 0.772 0.001 0.828 
T | 0.064 0.012 0.081 0.001 0.017 0.001 
"
TBF1	YPL128C, LPI16	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	AACCCTAA		7.53	12.2657	10.03	"Telobox-containing general regulatory factor; binds to TTAGGG repeats within subtelomeric anti-silencing regions (STARs) and possibly throughout the genome and mediates their insulating capacity by blocking silent chromatin propagation
"	No Data	No Data	TYE7	"A | 0.950 0.693 0.030 0.010 0.010 0.010 0.960 0.830 
C | 0.010 0.010 0.950 0.970 0.970 0.020 0.010 0.010 
G | 0.010 0.287 0.010 0.010 0.010 0.010 0.020 0.060 
T | 0.030 0.010 0.010 0.010 0.010 0.960 0.010 0.100 
"
TBS1	YBR150C	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	GCGGATCCGC	1.023517e-08	9.59	16.793	14.49	"Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purified mitochondria in high-throughput studies
"	YBR009C, YBR010W, YBR109C, YBR110W, YCR028C, YDR278C, YDR279W, YDR370C, YDR371W, YER044C, YGR106C, YHL012W, YHL013C, YKL062W, YKL072W, YLR011W, YML005W, YPR142C	YIL112W, YOL047C, YDL131W, YLR279W, YLR460C, YPL016W, YPR081C, YLR184W, YML089C, YPL148C, YIR027C, YMR136W, YNL180C, YOR235W, YOR009W, YIL087C, YER001W, YGL018C, YOR008C-A, YOR072W, YOL084W, YJL217W, YFL014W, YMR319C, YKR093W, YOL058W, YOR273C, YDR210W, YKL062W, YKL096W, YLR108C, YDR209C, YKL120W, YNL195C, YNL160W, YOL119C, YFR056C, YER163C, YMR034C, YEL037C, YFR055W, YGL032C, YHR137W, YKL096W-A, YOR024W, YDR122W, YCR102C, YLR395C, YNL134C, YPL165C	None	"A | 0.141 0.010 0.010 0.010 0.900 0.030 0.010 0.010 0.020 0.040 
C | 0.232 0.960 0.010 0.010 0.040 0.030 0.970 0.970 0.010 0.624 
G | 0.556 0.010 0.970 0.970 0.030 0.040 0.010 0.010 0.960 0.089 
T | 0.071 0.020 0.010 0.010 0.030 0.900 0.010 0.010 0.010 0.248 
"
TEA1	YOR337W	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	TCTGCGGAAATTAAATACC		14.39	19.5297	19.18	"Ty1 enhancer activator required for full levels of Ty enhancer-mediated transcription; C6 zinc cluster DNA-binding protein
"	No Data	No Data	None	"A | 0.230 0.160 0.050 0.020 0.010 0.010 0.010 0.500 0.921 0.650 0.020 0.020 0.970 0.960 0.424 0.320 0.790 0.180 0.010 
C | 0.140 0.420 0.010 0.130 0.970 0.010 0.030 0.080 0.030 0.030 0.010 0.010 0.010 0.010 0.121 0.130 0.090 0.390 0.970 
G | 0.040 0.230 0.020 0.530 0.010 0.970 0.950 0.270 0.030 0.040 0.010 0.010 0.010 0.010 0.081 0.120 0.030 0.170 0.010 
T | 0.590 0.190 0.920 0.320 0.010 0.010 0.010 0.150 0.020 0.280 0.960 0.960 0.010 0.020 0.374 0.430 0.090 0.260 0.010 
"
TEC1	YBR083W, ROC1	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	ACATTCTT	3.181866e-09	6.53	10.1054	8.98	"Transcription factor required for full Ty1 expression, Ty1-mediated gene activation, and haploid invasive and diploid pseudohyphal growth; TEA/ATTS DNA-binding domain family member
"	YAL028W, YAL029C, YAL041W, YAL043C-A, YAR010C, YAR014C, YAR015W, YBL016W, YBL017C, YBL107W-A, YBR012W-A, YBR012W-B, YBR048W, YBR082C, YBR083W, YBR099C, YCL027W, YCL055W, YCL056C, YDL013W, YDL126C, YDL127W, YDR040C, YDR041W, YDR074W, YDR207C, YDR208W, YDR210W, YDR210W-C, YDR240C, YDR309C, YDR316W-A, YDR316W-B, YDR317W, YDR463W, YDR522C, YDR544C, YDR545W, YEL040W, YER118C, YER120W, YER189W, YER190W, YFL039C, YGL001C, YGL032C, YGL062W, YGR007W, YGR014W, YGR027W-A, YGR027W-B, YGR038C-A, YGR039W, YGR199W, YGR221C, YHR001W, YHR005C, YHR084W, YHR091C, YHR141C, YHR142W, YIL119C, YIL123W, YJL145W, YJL186W, YJL187C, YJR054W, YKL095W, YKL096W, YKL096W-A, YKL097C, YKL104C, YKR041W, YKR061W, YKR091W, YLL015W, YLL065W, YLR046C, YLR084C, YLR413W, YLR452C, YLR463C, YLR465C, YLR467W, YML058C-A, YMR014W, YMR199W, YNL053W, YNL087W, YNL145W, YNL279W, YNL280C, YNL282W, YNL283C, YNL289W, YNL337W, YNL338W, YNL339C, YNR028W, YNR044W, YOL007C, YOR086C, YOR087W, YOR088W, YOR126C, YOR127W, YOR246C, YOR247W, YOR248W, YOR315W, YPL163C, YPR091C, YPR137C-A, YPR137C-B	YDR034C-C, YDR366C, YGL205W, YIL080W, YIL112W, YKR075C, YMR045C, YML117W-A, YMR046W-A, YNL018C, YNL052W, YOL013W-A, YOL045W, YOR192C-A, YOR223W, YAL007C, YGL039W, YHR146W, YKL078W, YMR220W, YMR192W, YOR377W, YCR057C, YBL085W, YDR034C-A, YDR005C, YDR034C-D, YDR365W-B, YMR042W, YMR046C, YOL048C, YOR190W, YOR192C-B, YDL125C, YGR122C-A, YHR145C, YLR433C, YLR466W, YPL016W, YBL034C, YDL171C, YCR076C, YGL262W, YLR374C, YMR107W, YOL104C, YOL106W, YPL283C, YDR276C, YJL215C, YKL141W, YLR152C, YLR184W, YLR156W, YLR157C-A, YML089C, YPL142C, YBR093C, YDR159W, YDR098C-A, YGR064W, YJL015C, YKR102W, YLL027W, YOL103W-B, YOL105C, YCL020W, YDR340W, YDR281C, YGR183C, YIL051C, YML058W, YMR251W-A, YMR287C, YNR027W, YPL077C, YPL109C, YPL083C, YGR296W, YGR166W, YJL131C, YBL091C-A, YBR012W-B, YCR019W, YHR001W-A, YHR003C, YIL122W, YJR026W, YJR028W, YJR093C, YJR030C, YLR256W, YLR227W-A, YMR050C, YMR053C, YNR067C, YOR235W, YBL004W, YKL098W, YNL163C, YAR010C, YEL022W, YEL024W, YEL056W, YGR161C-C, YGR103W, YGR161W-A, YKL056C, YLR410W-B, YMR173W, YNL221C, YNL253W, YNL284C-A, YOR075W, YPL160W, YBR012W-A, YBR043C, YCR017C, YCR018C-A, YDR015C, YDR045C, YDR409W, YIL087C, YJR025C, YJR027W, YJR029W, YJR061W, YLR281C, YLR256W-A, YMR017W, YMR051C, YMR023C, YNL054W-A, YNL055C, YNR066C, YOR234C, YPL186C, YPL218W, YPL249C-A, YER060W-A, YJR148W, YLL008W, YAR009C, YBR230C, YDL105W, YDR255C, YGR161C-D, YGR104C, YGR161W-B, YJL090C, YLR035C-A, YLR067C, YLR099C, YLR407W, YLR437C, YML003W, YLR410W-A, YML007W, YOR072W, YPR121W, YPR091C, YPR123C, YPR152C, YGL153W, YOL084W, YPL280W, YHR214C-B, YIL060W, YOR142W-A, YCR083W, YDL040C, YDR169C, YDR170W-A, YFL050C, YGR038C-A, YGR040W, YIR010W, YKL021C, YLR312C, YLR343W, YLR345W, YNL182C, YNL124W, YOL115W, YOR324C, YOR354C, YOR296W, YPR055W, YBL059C-A, YBL061C, YDL231C, YDR283C, YDR316W-A, YER037W, YER093C, YGL144C, YHR214C-C, YHR214W-A, YJL186W, YLR189C, YLR161W, YIL064W, YJR003C, YBR046C, YDR448W, YGL187C, YGR294W, YLR264W, YPL191C, YPL227C, YPL257W-A, YMR143W, YBR205W, YBR209W, YDR261W-A, YDR266C, YHR196W, YJL069C, YKL127W, YLR040C, YLR042C, YML010C-B, YOR051C, YPL066W, YBL101W-A, YER159C-A, YOR268C, YPL220W, YAL018C, YAR020C, YGR139W, YJL064W, YKL095W, YLR415C, YMR173W-A, YOR082C, YOR392W, YBR110W, YDL048C, YDR148C, YHR071W, YJL004C, YLR356W, YLR388W, YOL124C, YOR300W, YPR002W, YPR042C, YDR298C, YER072W, YHR219W, YLR140W, YML043C, YML045W-A, YBR083W, YJL005W, YJR158W, YNL160W, YOL155C, YPR002C-A, YNL316C, YBL005W-A, YDL173W, YDL205C, YDL175C, YDL207W, YDL209C, YER066C-A, YER069W, YER044C, YGL092W, YGL124C, YGL156W, YIL065C, YJL160C, YJL166W, YKL185W, YKL218C, YKL187C, YKL220C, YML040W, YMR303C, YNR040W, YOR142W-B, YOR178C, YOR118W, YOR148C, YOR180C, YBR054W, YER138C, YJR044C, YLR297W, YOL068C, YNL054W, YDR210W-D, YDR274C, YGR117C, YHR136C, YBL107W-A, YCR031C, YFL002W-B, YER137C-A, YER138W-A, YER169W, YHL005C, YIL165C, YLR300W, YMR034C, YNL070W, YPL257W-B, YPL234C, YBR180W, YBR212W, YDR210W-A, YDR239C, YDR267C, YDR210W-C, YDR241W, YDR269C, YDR211W, YEL039C, YHR135C, YKL069W, YLR427W, YMR211W, YMR185W, YPL075W, YPR158W-B, YCR099C, YCR101C, YDL056W, YDR486C, YDR488C, YGR027C, YHR079C-A, YLR364W, YLR334C, YMR158C-B, YOL103W-A, YOL134C, YOL166C, YOR343C-B, YPR044C, YDR365W-A, YIL011W, YFL068W, YGR027W-A, YLR395C, YOR372C, YOR343C-A, YPR041W, YGL130W, YJL168C	UPC2, YER130C	"A | 0.745 0.090 0.960 0.010 0.040 0.010 0.010 0.055 
C | 0.025 0.890 0.010 0.010 0.010 0.945 0.440 0.358 
G | 0.220 0.010 0.020 0.010 0.010 0.020 0.045 0.025 
T | 0.010 0.010 0.010 0.970 0.940 0.025 0.505 0.562 
"
THI2	YBR240C, phoF, PHO6	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	GGAAACTCTAAGAACT	4.530088e-19	9.76	17.899	16.82	"Zinc finger protein of the Zn(II)2Cys6 type, probable transcriptional activator of thiamine biosynthetic genes
"	YBL058W, YBL059C-A, YDR179C, YDR179W-A, YDR473C, YER076C, YER138C, YER183C, YGL178W, YGL183C, YGR273C, YGR277C, YGR278W, YHR003C, YIL151C, YJL203W, YJL204C, YJR037W, YLR031W, YLR423C, YLR424W, YLR429W, YMR257C, YNL212W, YNL213C, YOL077W-A, YOL078W, YOL080C, YOL144W, YOL145C	YBL090W, YCR012W, YCR040W, YDR432W, YER178W, YGR280C, YGR282C, YIL148W, YJR085C, YMR010W, YNL016W, YNL081C, YOR253W, YOR225W, YOR257W, YPL239W, YDL064W, YDL131W, YDR188W, YDR192C, YEL046C, YFR032C-A, YGL009C, YHR143W, YHR174W, YLR025W, YLR056W, YLR062C, YLR406C, YMR194W, YNL211C, YOR008C, YPL049C, YBR029C, YBR001C, YBR031W, YBL087C, YCR013C, YDR063W, YDR397C, YER117W, YER146W, YGR279C, YKR042W, YKR013W, YMR044W, YNL078W, YOR252W, YOR194C, YOR226C, YCR097W-A, YAL069W, YDL061C, YGR155W, YHR142W, YHR143W-A, YJL052W, YLR061W, YMR225C, YNL244C, YOR382W, YCR082W, YFR005C, YGR063C, YHR081W, YHR053C, YHR025W, YHR055C, YIR034C, YJR143C, YJR116W, YLR340W, YLR372W, YLR374C, YMR071C, YMR134W, YNL147W, YNL149C, YOR285W, YOR347C, YOR351C, YPR050C, YPR020W, YPR052C, YPL187W, YAR068W, YBL027W, YBL059W, YBR283C, YBR253W, YGL103W, YGR180C, YHR208W, YIL016W, YML085C, YMR286W, YMR256C, YNL307C, YNR032C-A, YOR103C, YPL142C, YPL144W, YBR091C, YBR067C, YDR461W, YFR006W, YGR034W, YGR064W, YHR021C, YJR146W, YJR117W, YLR339C, YMR074C, YNL110C, YNL146W, YOL077W-A, YOL109W, YOR286W, YPR013C, YPL271W, YPR051W, YAR062W, YBL026W, YBR252W, YCL018W, YDL191W, YDR281C, YER056C, YER087C-A, YGL102C, YGR211W, YGR181W, YGR215W, YIL015W, YJL178C, YLR185W, YML024W, YML055W, YML084W, YML026C, YNL302C, YNL306W, YPL143W, YBR010W, YDR378C, YER155C, YJR094W-A, YLR287C-A, YNL030W, YOR265W, YPL183W-A, YBR169C, YDL133C-A, YDL136W, YDR224C, YFR044C, YHR123W, YKL053C-A, YLR066W, YLR038C, YLR439W, YMR230W, YNL279W, YNL283C, YOR045W, YBL092W, YBR009C, YBR011C, YDR077W, YDR373W, YDR377W, YER154W, YGR285C, YNL055C, YOR234C, YPL249C-A, YJR148W, YAL012W, YAL045C, YBR162W-A, YBR196C, YDL075W, YDR225W, YJL122W, YKL081W, YLR065C, YOR078W, YBR070C, YDR502C, YGR037C, YLR344W, YLR348C, YOL144W, YOL146W, YOL086C, YOR293W, YOR327C, YOR357C, YBL003C, YGR254W, YGR192C, YKL209C, YKL178C, YMR260C, YNR037C, YPL092W, YCR088W, YDR139C, YDR471W, YFL017W-A, YHR064C, YLL010C, YLR343W, YMR138W, YMR112C, YNL150W, YNL184C, YOL143C, YPR053C, YOR221C, YBL028C, YBR262C, YGR189C, YIL027C, YJL188C, YKL177W, YLR161W, YML030W, YML094W, YML095C-A, YMR323W, YOR170W, YDR086C, YER131W, YGL189C, YHR010W, YIL158W, YIL162W, YKR057W, YKR093W, YLR262C-A, YLR234W, YLR264W, YOR239W, YPL225W, YBR171W, YHR190W, YKL058W, YLR040C, YLR104W, YLR420W, YNL285W, YNL259C, YOR393W, YPL037C, YDL058W, YCR060W, YDR447C, YHR005C-A, YHL001W, YIL127C, YJR063W, YKR092C, YLR292C, YML126C, YNL066W, YOL026C, YOR210W, YDL081C, YDL083C, YGL056C, YKL120W, YLR041W, YLR043C, YML009C, YOR020C, YOR084W, YCR097W, YDR510W, YFL026W, YHR072W-A, YKL032C, YKL003C, YLL050C, YLR388W, YOL126C, YPR062W, YDR322C-A, YDR357C, YGL087C, YGL089C, YLR170C, YBR109C, YBR145W, YDL045W-A, YDR115W, YLL014W, YLR325C, YNL190W, YNL162W, YOL121C, YPL281C, YBR268W, YJR004C, YKL216W, YKL156W, YLR167W, YMR303C, YNR044W, YNL322C, YDR056C, YDR454C, YDR396W, YDR428C, YER164W, YGL191W, YJR104C, YLR303W, YOR277C, YOR247W, YAL033W, YER019C-A, YGL031C, YGR148C, YHR136C, YHR141C, YMR245W, YPL013C, YCR028C-A, YIL133C, YKR094C, YLR237W, YLR302C, YMR003W, YNL070W, YOL040C, YOL071W, YOR276W, YOR248W, YAL030W, YBR210W, YBR244W, YGL030W, YGL032C, YGR114C, YGR118W, YJL136C, YKL069W, YLR051C, YLR421C, YPL071C, YBR118W, YBR090C, YFL034C-A, YFL037W, YGR027C, YJR135W-A, YKL006W, YKL008C, YLR332W, YOR307C, YOR369C, YPR044C, YCL007C, YCL009C, YDL182W, YDL184C, YIL008W, YJR009C, YKL164C, YLR150W, YLR180W, YLR212C, YML108W, YNR055C, YOR183W, YPL170W, YLR390W-A, YLR395C, YLR333C, YMR155W, YOL127W, YOL159C, YPR039W, YPR073C, YPR011C, YPR043W, YBL018C, YBR280C, YDL211C, YGR209C, YKL160W, YKL163W, YLR147C, YML081C-A, YOR182C, YPL165C, YPL107W, YPL171C, YIL115C, YIL173W	STP1	"A | 0.242 0.037 0.537 0.997 0.911 0.020 0.001 0.077 0.319 0.590 0.959 0.001 0.978 0.506 0.114 0.251 
C | 0.088 0.001 0.294 0.001 0.020 0.815 0.429 0.436 0.040 0.001 0.001 0.001 0.001 0.020 0.822 0.271 
G | 0.508 0.961 0.001 0.001 0.001 0.031 0.037 0.365 0.001 0.001 0.020 0.997 0.020 0.473 0.020 0.001 
T | 0.162 0.001 0.168 0.001 0.068 0.134 0.533 0.121 0.640 0.408 0.020 0.001 0.001 0.001 0.044 0.477 
"
THO2	YNL139C, RLR1, LDB5, ZRG13	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	ATTTTCTTCTTT	2.028194e-11	7.64	12.4089	11.75	"Subunit of the THO complex, which is required for efficient transcription elongation and involved in transcriptional elongation-associated recombination; required for LacZ RNA expression from certain plasmids
"	No Data	No Data	None	"A | 0.874 0.001 0.083 0.167 0.208 0.001 0.208 0.208 0.042 0.333 0.001 0.292 
C | 0.083 0.001 0.001 0.001 0.001 0.956 0.125 0.083 0.874 0.001 0.001 0.167 
G | 0.001 0.001 0.001 0.001 0.001 0.001 0.083 0.083 0.001 0.125 0.001 0.001 
T | 0.042 0.997 0.915 0.831 0.790 0.042 0.584 0.626 0.083 0.541 0.997 0.540 
"
TOD6	YBL054W, PBF1	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	AGCTCATCGC	0.01305973	6.43	13.426	12.53	"PAC motif binding protein involved in rRNA and ribosome biogenesis; subunit of the RPD3L histone deacetylase complex; Myb-like HTH transcription factor, similar to Dot6p; hypophosphorylated by rapamycin treatment in a Sch9p-dependent manne
"	No Data	No Data	DOT6, EDS1, GCR2, STB3	"A | 0.650 0.069 0.020 0.010 0.010 0.960 0.010 0.010 0.050 0.139 
C | 0.050 0.396 0.780 0.030 0.970 0.010 0.010 0.960 0.020 0.653 
G | 0.100 0.436 0.190 0.050 0.010 0.010 0.020 0.010 0.870 0.188 
T | 0.200 0.099 0.010 0.910 0.010 0.020 0.960 0.020 0.060 0.020 
"
TOS8	YGL096W	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	TGTCAA	0.3926778	4.52	8.59243	7.21	"Homeodomain-containing protein and putative transcription factor found associated with chromatin; target of SBF transcription factor; induced during meiosis and under cell-damaging conditions; similar to Cup9p transcription factor
"	YAL053W, YAL054C, YBL027W, YBL028C, YBL109W, YBL111C, YBL112C, YBL113C, YBR050C, YBR127C, YDL082W, YDL083C, YDR252W, YDR543C, YDR544C, YDR545W, YER189W, YER190W, YGR296W, YHR091C, YHR193C, YHR194W, YIL018W, YJL005W, YJR065C, YJR066W, YJR116W, YJR123W, YKL049C, YLL065W, YLR143W, YLR207W, YLR463C, YLR465C, YLR467W, YNL045W, YNL069C, YNL239W, YNL240C, YNR029C, YNR030W, YNR037C, YNR038W, YOR313C, YOR314W, YOR318C, YOR319W, YPR131C, YPR132W	YDL100C, YDR222W, YHR146W, YPL014W, YDL037C, YDR132C, YHR085W, YLR342W, YOL136C, YBR129C, YMR104C, YLR035C, YMR023C, YMR145C, YLL067C, YNL289W, YGR139W, YBR054W, YKR032W, YLR297W, YMR034C, YBR244W, YOL101C, YGL096W, YKR003W	None	"A | 0.010 0.010 0.010 0.010 0.970 0.640 
C | 0.160 0.010 0.010 0.970 0.010 0.070 
G | 0.010 0.970 0.010 0.010 0.010 0.070 
T | 0.820 0.010 0.970 0.010 0.010 0.220 
"
TYE7	YOR344C, SGC1	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	ATCACGTGAC	3.619058e-37	7.85	11.2046	11.47	"Serine-rich protein that contains a basic-helix-loop-helix (bHLH) DNA binding motif; binds E-boxes of glycolytic genes and contributes to their activation; may function as a transcriptional activator in Ty1-mediated gene expression
"	YAL007C, YAL026C, YAL038W, YBL016W, YBL017C, YBR012W-A, YBR012W-B, YBR039W, YBR133C, YBR135W, YBR144C, YBR145W, YBR229C, YCL074W, YCR018C-A, YCR019W, YCR087C-A, YCR088W, YDL027C, YDL051W, YDL052C, YDL073W, YDL074C, YDL152W, YDR102C, YDR103W, YDR160W, YDR210W-C, YDR240C, YDR278C, YDR316W-A, YDR316W-B, YEL044W, YEL045C, YEL046C, YER003C, YER004W, YER021W, YER060w-A, YER099C, YER100W, YER114C, YER124C, YER125W, YER138C, YER177W, YFR030W, YGL001C, YGL055W, YGL056C, YGL062W, YGL172W, YGL173C, YGL214W, YGL223C, YGL256W, YGL257C, YGR015C, YGR016W, YGR038C-A, YGR192C, YGR223C, YGR224W, YHR001W-A, YHR041C, YHR042W, YHR089C, YIL088C, YJL175W, YJL186W, YJL187C, YJR009C, YJR088C, YJR089W, YJR137C, YJR138W, YJR139C, YKL015W, YKL016C, YKL060C, YKL080W, YKL152C, YKL191W, YKL192C, YKR057W, YLL015W, YLL025W, YLR033W, YLR121C, YMR037C, YMR196W, YMR301C, YMR308C, YNL232W, YNR051C, YOL064C, YOR038C, YOR039W, YOR139C, YPL203W, YPL204W, YPL205C, YPL206C, YPR158W-A, YPR158W-B	YBL090W, YCR010C, YCR012W, YCR040W, YDR432W, YER178W, YHL042W, YGR280C, YIL146C, YIL148W, YKR012C, YLR250W, YNL016W, YNL081C, YOR253W, YOR223W, YOR225W, YOR257W, YPL239W, YPL178W, YPL211W, YKL122C, YAL064W-B, YDL064W, YDL131W, YDR192C, YFR032C-A, YGL009C, YGR124W, YHR143W, YHR174W, YHR115C, YHR119W, YJL055W, YKL049C, YKL080W, YLR025W, YLR060W, YLR062C, YLR434C, YLR406C, YLR467W, YMR193W, YMR194W, YNL239W, YNL241C, YNL211C, YOR004W, YOR006C, YOR008C, YOR071C, YPL049C, YPL051W, YPR078C, YBR001C, YBR031W, YBL087C, YCR013C, YDR397C, YER117W, YER146W, YGL231C, YGR275W, YGR279C, YIL082W, YJR086W, YKR042W, YKR013W, YLR275W, YOR252W, YOR192C, YOR194C, YOR226C, YOR258W, YCR097W-A, YAL067C, YAL038W, YAL069W, YBR220C, YBR222C, YDL061C, YGR151C, YGR155W, YHR112C, YHR142W, YHR143W-A, YHR147C, YJL052W, YLR089C, YLR028C, YLR061W, YLR435W, YLR466W, YMR225C, YNL244C, YOR066W, YPL046C, YPL048W, YCR073W-A, YCR106W, YDL033C, YCR082W, YDR096W, YDR126W, YDR128W, YDR160W, YFR005C, YGR063C, YHR081W, YHR053C, YHR025W, YHR055C, YIL176C, YIR034C, YJR143C, YJR116W, YLR340W, YLR372W, YMR071C, YNL115C, YNL147W, YNL149C, YOL078W, YOR285W, YOR287C, YOR317W, YOR347C, YOR321W, YOR351C, YPR050C, YPR020W, YPR052C, YPL187W, YAR064W, YAR068W, YBL027W, YBL059W, YBR283C, YBR253W, YCL017C, YDL188C, YDR339C, YGL103W, YGL077C, YGR180C, YHR208W, YIL016W, YKL137W, YLR152C, YML023C, YML085C, YML058C-A, YML029W, YMR286W, YMR256C, YNR032C-A, YPL142C, YPL144W, YPL146C, YBR091C, YBR127C, YBR067C, YCR077C, YDR129C, YDR461W, YFR006W, YGR030C, YGR062C, YGR034W, YHR021C, YJR146W, YJR117W, YLR304C, YLR306W, YLR339C, YMR074C, YNL110C, YNL176C, YNL146W, YNL178W, YNL116W, YOL105C, YOL077W-A, YOL109W, YOR344C, YOR286W, YPR013C, YPL271W, YNL251C, YAR062W, YBL026W, YBR282W, YBR252W, YCL018W, YBR256C, YDL191W, YDR309C, YDR338C, YDR281C, YER052C, YER025W, YGL070C, YGL102C, YGR181W, YGR215W, YGR185C, YIL015W, YHR211W, YIL019W, YKL138C, YKL169C, YKL140W, YLR121C, YLR185W, YLR125W, YML055W, YML026C, YML057W, YML086C, YMR283C, YMR253C, YNL300W, YPL143W, YPL145C, YPL147W, YER042W, YIR006C, YBR038W, YBR010W, YBR012C, YCL059C, YCR048W, YDR012W, YDR046C, YDR374C, YDR378C, YDR412W, YGL240W, YHL018W, YGR286C, YGR288W, YIL154C, YJR094W-A, YKR051W, YKR053C, YLR286C, YLR287C-A, YMR022W, YNL056W, YNL058C, YNL030W, YOL019W, YNR069C, YOR197W, YOR229W, YOR231W, YOR265W, YOR203W, YPL183W-A, YPL247C, YAL041W, YAL043C, YBR197C, YBR169C, YDL133C-A, YDL136W, YDR224C, YER002W, YER004W, YEL024W, YER007W, YFR044C, YHR121W, YHR188C, YJL091C, YKL053C-A, YKL054C, YKL119C, YLR066W, YLR068W, YLR038C, YLR439W, YLR410W-B, YMR168C, YMR170C, YMR230W, YNL279W, YOR045W, YBL092W, YBR009C, YBR011C, YBR043C, YCR045C, YCL058C, YCR049C, YDR071C, YDR077W, YDR373W, YDR377W, YER119C, YER152C, YER154W, YGR285C, YIL153W, YLR221C, YOL020W, YOR230W, YOR234C, YPL184C, YJR148W, YLR200W, YAL012W, YAL042W, YAL043C-A, YAL016W, YAL045C, YBR162W-A, YBR194W, YBR164C, YBR196C, YBR168W, YDL075W, YDR225W, YDR261C, YEL021W, YER005W, YGR161C, YGR161W-B, YJL122W, YJL060W, YKL081W, YLR065C, YLR035C-A, YLR067C, YLR099C, YLR438W, YMR233W, YNL214W, YOR010C, YOR078W, YDR502C, YFL022C, YGR037C, YJL028W, YLL009C, YLR344W, YLR378C, YLR380W, YMR139W, YOL144W, YOL086C, YOR293W, YOR327C, YOR357C, YOR329C, YPR054W, YPR024W, YBL003C, YGR254W, YGR192C, YHR214W, YJL159W, YKL209C, YKL178C, YLR134W, YMR260C, YPL092W, YFL031W, YHR199C, YJL062W, YCR088W, YDR167W, YDR107C, YDR471W, YFL017W-A, YHR032W, YHR064C, YJR121W, YLL010C, YLR345W, YLR379W, YMR138W, YMR112C, YMR083W, YNL150W, YNL152W, YOL143C, YOR292C, YOR324C, YPR053C, YPL279C, YOR221C, YBL028C, YBL032W, YBR262C, YCL027W, YDL229W, YGR189C, YIL053W, YIL023C, YHR214W-A, YIL027C, YJL184W, YJL188C, YKL175W, YKL146W, YKL177W, YML030W, YML094W, YML095C-A, YMR263W, YMR323W, YCR023C, YDR086C, YER131W, YGL189C, YHR010W, YHL032C, YIL158W, YKR057W, YKR093W, YLR262C-A, YLR264W, YNL038W, YOR237W, YOR239W, YPL221W, YPL225W, YER101C, YIL114C, YBR171W, YDR232W, YDR234W, YEL058W, YHR190W, YKL058W, YKL060C, YKL092C, YLR040C, YLR044C, YLR420W, YNL259C, YOR081C, YOR021C, YOR085W, YOR023C, YOR393W, YPL031C, YPL066W, YPL037C, YBR015C, YCL066W, YCR053W, YCR060W, YDR447C, YGL245W, YHR005C-A, YHL001W, YIL127C, YJR063W, YKR092C, YLR262C, YLR292C, YML126C, YNL066W, YOL026C, YOR210W, YAL022C, YDL081C, YEL060C, YGL056C, YGR109W-A, YKL120W, YKL063C, YLR041W, YLR043C, YML009C, YMR205C, YMR237W, YOR020C, YOR084W, YPL061W, YPL063W, YPR154W, YBR084C-A, YCR097W, YDR179C, YDR510W, YDR484W, YFL026W, YHR037W, YHR072W-A, YJL034W, YKL032C, YKL003C, YLL050C, YLR388W, YOL126C, YPR062W, YPR002W, YDL208W, YDR322C-A, YDR357C, YER072W, YGL087C, YGL089C, YHR219W, YKL184W, YLR170C, YNL321W, YOR181W, YFL032W, YBR109C, YBR145W, YCR090C, YDL045W-A, YDR115W, YFL023W, YFR018C, YGR044C, YJR131W, YLL018C, YLR325C, YNL162W, YOL121C, YOR334W, YPL281C, YBR268W, YCL035C, YER044C, YJR004C, YKL216W, YKL156W, YKL187C, YKL220C, YLR167W, YML042W, YMR303C, YNR040W, YNR042W, YNR044W, YNL322C, YOR178C, YOR118W, YOR148C, YPL163C, YBL107C, YDR056C, YDR454C, YDR396W, YGL191W, YIL138C, YJR104C, YJR046W, YLR303W, YOR277C, YOR247W, YPL262W, YPL203W, YAL033W, YEL036C, YER019C-A, YGL031C, YGR148C, YHR136C, YHR141C, YJL141C, YKL099C, YMR245W, YPL013C, YPR159W, YCR028C-A, YCR003W, YCR071C, YDR087C, YER136W, YIL133C, YIL169C, YKR094C, YLR237W, YLR300W, YLR302C, YMR003W, YNL070W, YNL074C, YNL045W, YOL071W, YOR276W, YOR248W, YAL059W, YBR178W, YBR180W, YBR182C, YDL121C, YDL123W, YDR239C, YDR269C, YGL032C, YGR118W, YHR135C, YJL136C, YKL067W, YKL069W, YLR051C, YLR421C, YMR215W, YNL268W, YPL038W, YPL071C, YPL075W, YAL029C, YBR090C, YFL034C-A, YFL037W, YFR001W, YGR085C, YGR027C, YIR022W, YJR135W-A, YKL006W, YLR364W, YOL164W, YOL134C, YOR369C, YPR044C, YBL082C, YCL007C, YCL009C, YDL184C, YDR002W, YER048C, YIL008W, YIL040W, YJR009C, YKL164C, YKL196C, YLR180W, YLR212C, YML108W, YMR276W, YNR022C, YNR024W, YNR055C, YPL170W, YPL108W, YGR024C, YKL006C-A, YKL040C, YLR022C, YLR395C, YLR333C, YOL127W, YOL159C, YOR306C, YOR312C, YPR073C, YPR043W, YBL018C, YBR280C, YDR305C, YGR209C, YIL069C, YKL160W, YKL163W, YLR147C, YLR177W, YML077W, YML081C-A, YOR182C	AFT2, GCN4, INO2, MET32, MET4, TBF1	"A | 0.598 0.044 0.010 0.890 0.017 0.051 0.068 0.019 0.821 0.051 
C | 0.067 0.139 0.957 0.012 0.849 0.228 0.106 0.102 0.031 0.445 
G | 0.291 0.047 0.016 0.042 0.114 0.704 0.013 0.871 0.095 0.110 
T | 0.045 0.771 0.016 0.055 0.020 0.018 0.812 0.009 0.053 0.394 
"
UGA3	YDL170W	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	CCGGAAGCGG	5.527497e-05	8.17	8.54052	11.41	"Transcriptional activator necessary for gamma-aminobutyrate (GABA)-dependent induction of GABA genes (such as UGA1, UGA2, UGA4); zinc-finger transcription factor of the Zn(2)-Cys(6) binuclear cluster domain type; localized to the nucleus
"	YAL017W, YAL018C, YAL049C, YBL106C, YBR102C, YBR103W, YDL092W, YDL094C, YDL132W, YDL154W, YDL189W, YDL190C, YDL206W, YDR159W, YDR177W, YDR394W, YER105C, YER106W, YFL002W-A, YFL002W-B, YFR023W, YFR057W, YGL083W, YGL084C, YGL115W, YGL227W, YGR017W, YGR188C, YHR016C, YHR017W, YHR123W, YHR164C, YJR083C, YJR084W, YKL078W, YKL080W, YKR102W, YLR273C, YLR274W, YML124C, YMR135W-A, YNL105W, YNL225C, YOL076W, YOL077C, YOR102W, YOR128C, YOR190W, YPL039W, YPL040C, YPL116W, YPL117C, YPL258C	YNL275W, YOR377W, YBR005W, YCR009C, YGL166W, YMR009W, YOL014W, YOL016C, YOR220W, YOR226C, YGR120C, YMR189W, YHR053C, YMR316W, YBR093C, YOL139C, YOL109W, YBL026W, YBR288C, YDR281C, YBR010W, YLR284C, YLR257W, YOR385W, YIL117C, YOR202W, YBR166C, YDL135C, YDL075W, YGR161C, YJL124C, YLR097C, YOR327C, YDL170W, YHR215W, YLR194C, YPL156C, YBR101C, YMR112C, YMR142C, YOL149W, YOR298C-A, YPL273W, YAR071W, YBL028C, YDL201W, YER035W, YGL148W, YGR253C, YKL214C, YML063W, YML094W, YML095C-A, YMR321C, YPL117C, YDR210W, YGR136W, YGR142W, YLR292C, YLR294C, YNL031C, YNL096C, YOL032W, YBR174C, YDR209C, YGR135W, YGR137W, YKL120W, YOR052C, YGR019W, YKL001C, YIL066C, YLR172C, YDR481C, YDL241W, YER100W, YGR195W, YLR167W, YPL129W, YBR244W, YNL007C	GIS1, MSN4, RGM1	"A | 0.042 0.200 0.055 0.408 0.743 0.584 0.106 0.335 0.030 0.042 
C | 0.704 0.709 0.150 0.071 0.058 0.104 0.327 0.518 0.020 0.050 
G | 0.082 0.037 0.582 0.467 0.150 0.234 0.469 0.033 0.833 0.861 
T | 0.172 0.054 0.213 0.054 0.049 0.078 0.098 0.114 0.117 0.047 
"
UME1	YPL139C, WTM3	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	AAGGAAAAGTA	1.459269e-11	8.96	12.1528	11.0	"Negative regulator of meiosis, required for repression of a subset of meiotic genes during vegetative growth, binding of histone deacetylase Rpd3p required for activity, contains a NEE box and a WD repeat motif; homologous with Wtm1p, Wtm2p
"	No Data	YBR006W, YGL169W, YGL232W, YGR278W, YMR010W, YML114C, YAL068C, YGR095C, YHR146W, YJL115W, YKL043W, YNL275W, YOR071C, YPL021W, YDR207C, YPR157W, YMR042W, YNR058W, YPL206C, YPL240C, YBR222C, YLR026C, YMR191W, YNL240C, YPL016W, YPR138C, YDL171C, YGR001C, YHR053C, YHR055C, YOL136C, YGL077C, YLR154C, YMR314W, YNL333W, YNL335W, YBR093C, YOL109W, YLR183C, YML022W, YNL334C, YOR160W, YOR132W, YIL090W, YOR261C, YPL182C, YGL019W, YLR033W, YLR438C-A, YLR412W, YOR075W, YGR116W, YDR071C, YHL017W, YIL117C, YJR025C, YJR094C, YNR066C, YPL186C, YDL135C, YEL020C, YFR041C, YJL124C, YOR074C, YOR386W, YGL153W, YMR113W, YOL118C, YOR357C, YJL223C, YLR192C, YMR260C, YMR294W-A, YNR035C, YPL156C, YBR101C, YFL016C, YGR012W, YIR010W, YJR150C, YMR144W, YOL117W, YOL149W, YOR298C-A, YCL027W, YGR219W, YGR253C, YER060W, YLR232W, YNL095C, YNL065W, YOL002C, YDR232W, YGL055W, YHR132W-A, YLR040C, YLR042C, YLR416C, YMR204C, YMR236W, YMR180C, YNL289W, YOR049C, YPL066W, YPR098C, YBL098W, YLR231C, YNL031C, YNL064C, YNL100W, YNR074C, YDR209C, YHR163W, YLR041W, YBR082C, YDR146C, YDR541C, YKL001C, YMR147W, YMR151W, YOL152W, YOL122C, YOR367W, YCL038C, YGR260W, YIL062C, YJR005W, YJL167W, YMR272C, YBR083W, YDR145W, YDR481C, YGR078C, YKL218C, YNR044W, YBL107C, YDR088C, YLR297W, YMR035W, YDR214W, YHR200W, YOR027W, YOR059C, YOR091W, YGL255W, YIL165C, YMR034C, YOL038W, YBR244W, YGR177C, YLR047C, YLR049C, YML018C, YMR181C, YMR243C, YPL040C, YCL004W, YDR492W, YIL044C, YLR174W, YPL134C, YJL046W, YMR098C, YOL161C, YOL101C, YOR342C, YLR173W, YML075C, YML107C, YNL007C, YNL013C, YPL139C, YPR180W	None	"A | 0.868 0.796 0.011 0.011 0.797 0.975 0.975 0.404 0.011 0.404 0.975 
C | 0.007 0.007 0.007 0.007 0.007 0.007 0.007 0.221 0.007 0.007 0.007 
G | 0.114 0.007 0.542 0.971 0.185 0.007 0.007 0.185 0.614 0.007 0.007 
T | 0.011 0.190 0.440 0.011 0.011 0.011 0.011 0.190 0.368 0.582 0.011 
"
UME6	YDR207C, RIM16, NIM2, CAR80	Pachkov et al	http://www.ncbi.nlm.nih.gov/pubmed/17130146	TTTAGCCGCCGA	7.71213e-81	10.32	18.3083	15.37	"Key transcriptional regulator of early meiotic genes, binds URS1 upstream regulatory sequence, couples metabolic responses to nutritional cues with initiation and progression of meiosis, forms complex with Ime1p, and also with Sin3p-Rpd3p
"	YAL017W, YAL018C, YAL022C, YAL053W, YAL054C, YAR035W, YBL063W, YBL064C, YBL077W, YBL078C, YBL085W, YBL086C, YBR112C, YBR114W, YBR184W, YBR196C, YBR197C, YBR246W, YBR283C, YBR284W, YCL024W, YCL025C, YCR059C, YCR060W, YCR061W, YCR062W, YDL047W, YDL086W, YDL087C, YDL193W, YDL210W, YDL215C, YDR040C, YDR041W, YDR054C, YDR055W, YDR091C, YDR092W, YDR231C, YDR232W, YDR256C, YDR284C, YDR285W, YDR309C, YDR359C, YDR384C, YDR385W, YDR391C, YDR392W, YDR487C, YDR508C, YDR510W, YEL024W, YEL025C, YER018C, YER019W, YER044C-A, YER053C-A, YER054C, YER111C, YER112W, YER130C, YER131W, YER179W, YER184C, YER185W, YFL003C, YFL013W-A, YFL021W, YFL022C, YFR015C, YFR017C, YGL183C, YGL184C, YGL227W, YGL250W, YGL251C, YGR025W, YGR026W, YGR053C, YGR054W, YGR067C, YGR069W, YGR194C, YGR195W, YGR234W, YGR241C, YGR243W, YGR256W, YGR264C, YGR266W, YGR268C, YGR270W, YGR280C, YGR281W, YHL024W, YHL030W, YHL031C, YHR007C, YHR008C, YHR013C, YHR014W, YHR028C, YHR033W, YHR098C, YHR099W, YHR124W, YHR136C, YHR137W, YHR138C, YHR153C, YHR154W, YIL033C, YIL090W, YIL091C, YIL100W, YIL101C, YIL126W, YIL127C, YIL144W, YIL145C, YIR013C, YIR014W, YJL006C, YJL045W, YJL051W, YJL089W, YJL090C, YJL102W, YJL103C, YJL106W, YJL107C, YJL108C, YJL133W, YJL152W, YJL153C, YJR009C, YJR044C, YJR091C, YJR092W, YJR095W, YJR119C, YJR120W, YJR121W, YKL015W, YKL016C, YKL073W, YKL074C, YKL078W, YKL217W, YKR065C, YLL019C, YLL020C, YLL029W, YLL030C, YLL037W, YLL039C, YLL043W, YLL044W, YLL045C, YLL046C, YLR012C, YLR013W, YLR095C, YLR096W, YLR112W, YLR114C, YLR115W, YLR259C, YLR260W, YLR263W, YLR286C, YLR294C, YLR295C, YLR296W, YLR297W, YLR314C, YLR315W, YLR317W, YLR344W, YLR346C, YLR373C, YLR375W, YLR399C, YLR400W, YLR414C, YLR437C, YLR438W, YLR453C, YLR454W, YML042W, YML043C, YML058W, YML059C, YML084W, YML085C, YML088W, YML089C, YML091C, YML100W, YML101C, YML102C-A, YMR018W, YMR039C, YMR040W, YMR057C, YMR058W, YMR069W, YMR070W, YMR076C, YMR101C, YMR108W, YMR135W-A, YMR186W, YMR195W, YMR244C-A, YMR246W, YMR251W-A, YMR280C, YMR281W, YMR290C, YMR291W, YMR296C, YMR297W, YMR304C-A, YMR305C, YMR306W, YNL124W, YNL125C, YNL149C, YNL186W, YNL191W, YNL210W, YNL211C, YNL269W, YNL271C, YNL303W, YNL304W, YNL305C, YNR001C, YOL052C-A, YOL076W, YOL077C, YOL092W, YOL100W, YOL101C, YOL103W-A, YOL103W-B, YOL104C, YOL123W, YOL124C, YOL131W, YOR078W, YOR082C, YOR084W, YOR100C, YOR101W, YOR290C, YOR291W, YOR294W, YOR302W, YOR303W, YOR320C, YOR321W, YOR330C, YOR332W, YOR338W, YOR342C, YOR343C, YOR354C, YOR378W, YPL016W, YPL017C, YPL028W, YPL034W, YPL081W, YPL082C, YPL111W, YPL120W, YPL121C, YPL160W, YPL161C, YPL181W, YPL183C, YPL200W, YPL201C, YPL251W, YPL253C, YPR006C, YPR029C, YPR030W, YPR063C, YPR064W, YPR119W, YPR151C, YPR162C, YPR163C, YPR164W	YBR006W, YCR010C, YCL050C, YDR034W-B, YDR366C, YHL044W, YHL048W, YIL078W, YIL110W, YIL142W, YIL144W, YIL146C, YIL084C, YIL116W, YIL148W, YLR214W, YLR244C, YLR216C, YMR045C, YMR046W-A, YNL016W, YNR057C, YOL013W-A, YAL068C, YGL009C, YKL043W, YLR461W, YPL015C, YPL017C, YDR207C, YCL049C, YDR034C-A, YDR034C-D, YDR035W, YDR365W-B, YIL077C, YIL109C, YIL141W, YIL079C, YIL111W, YIL143C, YIL082W, YIL145C, YIL083C, YIL147C, YKR009C, YKR013W, YLR217W, YNL019C, YOR222W, YOR192C-B, YBR186W, YGL038C, YGR122C-A, YHR145C, YKL073W, YLR024C, YLR087C, YMR189W, YNL238W, YNL270C, YNL210W, YOR003W, YPL018W, YIR001C, YIR003W, YIR034C, YLL030C, YMR101C, YNL149C, YOL104C, YOR317W, YOR351C, YGR244C, YIL046W, YIL016W, YIL018W, YIL020C, YJL145W, YLR152C, YLR156W, YML056C, YML087C, YML089C, YNL333W, YNL335W, YNR028W, YNL305C, YNL337W, YJL050W, YBR093C, YGR030C, YGR004W, YIR002C, YIR033W, YKL015W, YLL031C, YMR133W, YOL103W-B, YPL121C, YBR256C, YDR340W, YGL104C, YGR211W, YIL014W, YIL015W, YIL047C, YIL049W, YIL019W, YLR157C, YNL332W, YNL336W, YPL111W, YCL057W, YDR072C, YHL022C, YHL024W, YIL118W, YIL150C, YIL088C, YIL120W, YIL090W, YIL154C, YIL092W, YIL124W, YKR053C, YLR256W, YMR018W, YMR050C, YNR071C, YPL245W, YBL004W, YAR010C, YBR197C, YBR169C, YLR096W, YLR438C-A, YMR170C, YMR173W, YNL217W, YOR011W, YOR077W, YOR387C, YOR389W, YDR147W, YPL160W, YCL056C, YCR018C-A, YCL064C, YER179W, YIL085C, YIL117C, YIL087C, YIL121W, YIL153W, YIL091C, YIL123W, YIL155C, YJR027W, YJR029W, YNR066C, YJR148W, YAR009C, YBR230C, YGR131W, YGR161C-D, YHR153C, YJL088W, YKL085W, YLR035C-A, YLR099C, YLR037C, YLR101C, YLR438W, YMR195W, YPL054W, YOR388C, YOR390W, YBR136W, YBR070C, YFR017C, YHR029C, YIR036C, YIR038C, YIR011C, YIR042C, YNL155W, YOL084W, YOR298W, YPL276W, YBL064C, YBR291C, YDL198C, YGL081W, YHR214C-B, YIL022W, YIL024C, YIL060W, YJL153C, YLR132C, YML091C, YMR291W, YPL088W, YPL156C, YFL014W, YBR069C, YBR101C, YHR032W, YIR004W, YIR035C, YIR037W, YIR008C, YIR010W, YJR150C, YJR156C, YLL039C, YLR343W, YNL150W, YOR352W, YOR298C-A, YPL273W, YPL275W, YPR027C, YBL030C, YCL025C, YBR296C, YER062C, YIL021W, YIL053W, YIL023C, YIL027C, YJL222W, YML090W, YML035C, YMR319C, YNR001C, YGL062W, YCR061W, YGL183C, YGR294W, YIL094C, YIL158W, YIL096C, YIL098C, YIL130W, YIL162W, YIL100W, YIL132C, YIL164C, YKR055W, YKR087C, YKR093W, YML131W, YOL058W, YIL114C, YAL054C, YHR162W, YJL103C, YLR042C, YLR414C, YLR420W, YCR062W, YER188W, YGL184C, YGR295C, YIL093C, YIL125W, YIL157C, YIL127C, YLR263W, YMR056C, YMR058W, YML132W, YNL033W, YNL064C, YNR072W, YNR076W, YEL059C-A, YGR109W-A, YHR157W, YHR163W, YJL100W, YJL102W, YKL120W, YLR413W, YMR173W-A, YOR394W, YFL059W, YIR044C, YIR017C, YJL038C, YJR159W, YKL001C, YLL013C, YLL046C, YLL018C-A, YMR147W, YNL195C, YOL156W, YOL126C, YOL158C, YPR002W, YBL043W, YCL038C, YER044C-A, YGL119W, YGL157W, YGR264C, YGR234W, YIL030C, YIL062C, YIL032C, YIL004C, YIL006W, YIL036W, YLR136C, YLR168C, YLR142W, YDR174W, YFR018C, YIR012W, YIR043C, YIR014W, YIR016W, YJL005W, YJR158W, YLL047W, YLR353W, YMR148W, YNL126W, YNL132W, YNL196C, YOL155C, YOL157C, YPR029C, YPR002C-A, YNL316C, YBL005W-A, YBL069W, YBR302C, YIL001W, YIL031W, YIL003W, YIL033C, YIL005W, YIL035C, YIL067C, YKL216W, YML042W, YMR297W, YNR009W, YER091C, YDR056C, YDR090C, YDR032C, YFL003C, YHR014W, YHR018C, YIL134W, YIL106W, YIL138C, YIL170W, YIL108W, YIL140W, YIL172C, YLR297W, YLR299W, YMR006C, YAR053W, YDR210W-D, YDR272W, YFR056C, YGL065C, YGR144W, YGR117C, YHR202W, YJL079C, YLR114C, YLR455W, YLR457C, YMR245W, YNL235C, YNL269W, YPL076W, YBL107W-A, YDR055W, YER138W-A, YGL190C, YIL101C, YIL133C, YIL165C, YIL103W, YIL137C, YIL107C, YIL139C, YIL171W, YJR071W, YMR062C, YOL003C, YOL036W, YOL007C, YOL009C, YPL257W-B, YJR137C, YBR244W, YBR184W, YFR055W, YJL106W, YMR211W, YNL264C, YPR158W-B, YBR116C, YBR087W, YCR104W, YFR026C, YFR030W, YFR031C-A, YIR022W, YIR024C, YIR026C, YLR394W, YLR334C, YMR093W, YMR095C, YMR097C, YMR158C-B, YNL141W, YDR365W-A, YER049W, YGL101W, YIL008W, YIL038C, YIL070C, YIL040W, YIL072W, YIL011W, YIL042C, YIL074C, YIL044C, YIL076W, YKL162C-A, YNL012W, YPL134C, YGL033W, YFL062W, YGR024C, YIR021W, YLR359W, YLR329W, YLR393W, YMR094W, YMR096W, YOL161C, YOL131W, YOR306C, YOR338W, YOR374W, YPR007C, YPR071W, YER073W, YGR267C, YGR269W, YIL007C, YIL009C-A, YIL039W, YIL071C, YIL010W, YIL041W, YIL043C, YIL075C, YMR306C-A, YNR019W, YIL115C	DAL82, MIG1, MIG3, RSC3, RSC30, RSF2, SUT1, YPR196W	"A | 0.378 0.318 0.001 0.811 0.046 0.001 0.001 0.015 0.001 0.001 0.110 0.842 
C | 0.076 0.013 0.004 0.002 0.014 0.997 0.997 0.001 0.996 0.802 0.251 0.005 
G | 0.064 0.007 0.001 0.001 0.934 0.001 0.001 0.983 0.001 0.047 0.617 0.107 
T | 0.483 0.662 0.994 0.186 0.006 0.001 0.001 0.001 0.002 0.150 0.022 0.046 
"
UPC2	YDR213W, MOX4	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	ATTGACCTGGTC	0.0006281669	9.95	17.1661	14.72	"Sterol regulatory element binding protein, induces transcription of sterol biosynthetic genes and of DAN/TIR gene products; Ecm22p homolog; relocates from intracellular membranes to perinuclear foci on sterol depletion
"	YAR009C, YBR109C, YBR110W, YBR159W, YBR163W, YCL002C, YCL006C, YCL007C, YCL008C, YCL009C, YCL010C, YCR002C, YCR004C, YCR005C, YCR006C, YCR008W, YCR012W, YCR032W, YDL013W, YDL092W, YDL094C, YDL179W, YDR045C, YDR056C, YDR057W, YDR066C, YDR075W, YDR080W, YDR179C, YDR179W-A, YDR183W, YDR210W-D, YDR279W, YDR282C, YDR286C, YDR287W, YDR294C, YDR370C, YDR371W, YDR372C, YDR373W, YDR404C, YDR405W, YDR472W, YER044C, YER066C-A, YER068W, YER138C, YFR007W, YFR041C, YFR042W, YGL116W, YGR004W, YGR126W, YGR187C, YGR188C, YGR200C, YHR171W, YHR209W, YIL014W, YIL048W, YIL139C, YJL094C, YJL193W, YJL195C, YJR012C, YJR013W, YJR088C, YJR089W, YJR098C, YJR099W, YJR100C, YJR102C, YJR103W, YJR108W, YJR132W, YJR142W, YJR154W, YKL039W, YKL040C, YKL077W, YLL014W, YLR097C, YLR269C, YLR271W, YLR446W, YMR052W, YMR125W, YMR193W, YNL012W, YNL013C, YNL076W, YNL258C, YNL284C, YNR011C, YNR012W, YNR054C, YOL024W, YOL049W, YOL050C, YOL102C, YOR102W, YOR115C, YOR209C, YOR210W, YOR263C, YOR265W, YOR280C, YOR282W, YOR309C, YOR310C, YOR365C, YOR367W, YOR368W, YPL113C, YPL208W, YPL209C, YPR122W, YPR139C, YPR140W	YMR220W, YER011W, YMR134W, YDR314C, YBR093C, YFR006W, YNL300W, YLR100W, YOL053W, YLR099C, YLR101C, YOR010C, YKR055W, YML012W, YML097C, YHR189W, YGR176W, YDR213W, YGR177C, YLR366W, YOR306C, YBL018C, YER077C	TEC1	"A | 0.610 0.010 0.010 0.020 0.950 0.010 0.010 0.010 0.010 0.010 0.040 0.010 
C | 0.010 0.386 0.149 0.010 0.010 0.970 0.950 0.010 0.040 0.178 0.010 0.450 
G | 0.370 0.010 0.010 0.960 0.010 0.010 0.010 0.010 0.940 0.743 0.010 0.260 
T | 0.010 0.594 0.832 0.010 0.030 0.010 0.030 0.970 0.010 0.069 0.940 0.280 
"
URC2	YDR520C, RRT4	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	TCTCCGGCGGA	7.892802e-10	13.7	17.2937	15.15	"Putative Zn(II)2Cys6 motif containing transcription factor; non-essential gene identified in a screen for mutants with increased levels of rDNA transcription; similar to S. kluyveri Urc2p involved in uracil catabolism
"	No Data	No Data	None	"A | 0.162 0.036 0.072 0.001 0.001 0.001 0.107 0.001 0.001 0.162 0.662 
C | 0.088 0.924 0.036 0.959 0.997 0.001 0.072 0.997 0.001 0.088 0.088 
G | 0.123 0.001 0.107 0.004 0.001 0.997 0.820 0.001 0.994 0.588 0.088 
T | 0.627 0.039 0.785 0.036 0.001 0.001 0.001 0.001 0.004 0.162 0.162 
"
USV1	YPL230W, NSF1	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	AGGGG	0.3094135	5.68	9.48744	7.62	"Putative transcription factor containing a C2H2 zinc finger; mutation affects transcriptional regulation of genes involved in growth on non-fermentable carbon sources, response to salt stress and cell wall biosynthesis
"	YAL001C, YAL058W, YAR070C, YAR071W, YBL059W, YBR159W, YBR239C, YCL051W, YCL052C, YDL051W, YDL052C, YDL105W, YDL106C, YDR113C, YDR115W, YDR328C, YDR503C, YER172C, YER173W, YFL034W, YFR023W, YFR044C, YFR045W, YGL164C, YGL165C, YGL205W, YGL206C, YGR166W, YHL009C, YHR114W, YIL111W, YIR024C, YIR025W, YJL033W, YJL193W, YJL195C, YJR041C, YJR042W, YKL168C, YKL175W, YKL176C, YLR022C, YLR166C, YLR167W, YLR263W, YNL010W, YNL011C, YNL310C, YNR068C, YPL186C, YPL266W, YPR004C	No Data	GSM1, MIG1, MIG2, MIG3, NHP10, NRG1, OAF1, PHD1, RDS2, RPH1, RSC3, RSF2, SKN7, SOK2, STP1, SUT1, YDR026C, YER184C	"A | 0.970 0.200 0.010 0.010 0.010 
C | 0.010 0.010 0.010 0.010 0.010 
G | 0.010 0.780 0.970 0.970 0.970 
T | 0.010 0.010 0.010 0.010 0.010 
"
WAR1	YML076C	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	TTGACTTGAACC	0.001784387	12.0	11.034	12.56	"Homodimeric Zn2Cys6 zinc finger transcription factor; binds to a weak acid response element to induce transcription of PDR12 and FUN34, encoding an acid transporter and a putative ammonia transporter, respectively
"	YAL048C, YAR007C, YAR008W, YAR050W, YBL050W, YBL051C, YBL074C, YBL101W-B, YBR060C, YBR062C, YBR064W, YBR120C, YBR154C, YBR155W, YBR236C, YBR237W, YBR254C, YBR255W, YBR258C, YBR259W, YBR293W, YCR017C, YCR082W, YCR099C, YCR100C, YDL001W, YDL002C, YDL045W-A, YDL137W, YDL156W, YDL157C, YDL158C, YDR074W, YDR089W, YDR090C, YDR194C, YDR195W, YDR318W, YDR333C, YDR334W, YDR344C, YDR355C, YDR440W, YDR461W, YEL055C, YGL095C, YGL144C, YGL169W, YGL195W, YGR084C, YGR094W, YGR215W, YGR220C, YHL002W, YHL003C, YHR005C-A, YHR022C, YHR023W, YHR068W, YHR086W, YHR118C, YHR119W, YHR155W, YIL084C, YIL115C, YIR024C, YIR025W, YIR030C, YJL012C, YJR067C, YJR068W, YKL123W, YKL124W, YKL201C, YKR059W, YLR087C, YLR088W, YLR242C, YLR243W, YLR282C, YLR450W, YML096W, YML097C, YML124C, YMR066W, YMR154C, YMR155W, YMR188C, YMR189W, YMR271C, YMR287C, YMR288W, YMR290W-A, YNL010W, YNL011C, YNL025C, YNL222W, YNL290W, YNL291C, YOL097C, YOR035C, YOR036W, YOR174W, YOR188W, YOR215C, YOR343C-A, YOR343C-B, YPL180W, YPL182C, YPL243W, YPL244C, YPL257W-A, YPL257W-B, YPR110C, YPR111W	YOR071C, YKR011C, YNL117W, YBR093C, YFR006W, YHL020C, YDR200C, YMR017W, YKL050C, YMR169C, YOR072W, YPR123C, YLR297W, YMR034C, YML076C, YDL057W, YFR029W	None	"A | 0.010 0.010 0.242 0.960 0.089 0.120 0.406 0.120 0.340 0.525 0.040 0.178 
C | 0.069 0.050 0.020 0.010 0.673 0.010 0.010 0.010 0.120 0.356 0.792 0.673 
G | 0.050 0.110 0.727 0.020 0.010 0.150 0.079 0.860 0.290 0.089 0.010 0.109 
T | 0.871 0.830 0.010 0.010 0.228 0.720 0.505 0.010 0.250 0.030 0.158 0.040 
"
XBP1	YIL101C	Foat et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17947326	GCTCGAGGAT	4.110774e-12	6.9	12.7347	12.44	"Transcriptional repressor that binds to promoter sequences of the cyclin genes, CYS3, and SMF2; expression is induced by stress or starvation during mitosis, and late in meiosis; member of the Swi4p/Mbp1p family; potential Cdc28p substrate
"	YAL009W, YAL010C, YAL011W, YAR010C, YBL027W, YBL028C, YBR127C, YDL215C, YDR019C, YDR451C, YDR452W, YFR016C, YHR051W, YHR193C, YHR194W, YIL018W, YIR017C, YIR018W, YJL045W, YJL112W, YLL037W, YLL039C, YLR143W, YMR183C, YMR184W	YKL111C, YLR025W, YLR436C, YNL211C, YPL017C, YPL049C, YNL019C, YPL016W, YPR109W, YHR085W, YIR034C, YBR093C, YFR006W, YDR281C, YLR119W, YJR148W, YLR099C, YPL058C, YBR291C, YBR046C, YNL065W, YKL090W, YPL066W, YPL063W, YHR097C, YKL001C, YPL162C, YHR068W, YPL095C, YFL008W, YMR034C, YOR212W, YHR135C, YHR140W, YLR113W, YNL296W, YOL160W, YDL216C, YDR485C, YNR050C, YNL328C	HSF1, MOT2, STB3	"A | 0.010 0.050 0.030 0.010 0.010 0.850 0.150 0.300 0.810 0.290 
C | 0.140 0.630 0.010 0.970 0.010 0.010 0.010 0.010 0.160 0.080 
G | 0.690 0.010 0.010 0.010 0.970 0.010 0.830 0.680 0.010 0.030 
T | 0.160 0.310 0.950 0.010 0.010 0.130 0.010 0.010 0.020 0.600 
"
YAP1	YML007W, SNQ3, PAR1	Pachkov et al	http://www.ncbi.nlm.nih.gov/pubmed/17130146	TGCTTACTAAT	2.2480275e-17	10.25	13.9483	12.13	"Basic leucine zipper (bZIP) transcription factor required for oxidative stress tolerance; activated by H2O2 through the multistep formation of disulfide bonds and transit from the cytoplasm to the nucleus; mediates resistance to cadmium
"	YAL003W, YAL005C, YAL037W, YBL018C, YBL032W, YBL033C, YBL087C, YBR068C, YBR190W, YBR191W, YBR200W, YCR028C, YDL013W, YDL017W, YDL018C, YDL020C, YDL133W, YDL170W, YDL171C, YDL179W, YDL182W, YDL183C, YDR010C, YDR011W, YDR013W, YDR059C, YDR060W, YDR132C, YDR164C, YDR165W, YDR224C, YDR225W, YDR259C, YDR261C, YDR307W, YDR308C, YDR316W-A, YDR316W-B, YDR500C, YDR501W, YDR533C, YEL042W, YEL044W, YEL045C, YEL046C, YER012W, YER044C, YER078C, YER079W, YER138C, YFL034W, YFL056C, YFL057C, YFR017C, YFR023W, YGL114W, YGL134W, YGL135W, YGL136C, YGL202W, YGR009C, YGR010W, YGR011W, YGR027C, YGR060W, YGR162W, YGR191W, YGR192C, YGR194C, YGR195W, YGR234W, YHR048W, YHR179W, YJL048C, YJL060W, YJL095W, YJL098W, YJL100W, YJL101C, YJL148W, YJR104C, YJR105W, YJR109C, YJR110W, YJR122W, YJR123W, YKL071W, YKL150W, YKL151C, YKR052C, YKR054C, YKR055W, YKR058W, YKR071C, YKR076W, YLL024C, YLL058W, YLL059C, YLL060C, YLL063C, YLR074C, YLR075W, YLR105C, YLR108C, YLR109W, YLR302C, YLR367W, YLR369W, YLR439W, YLR460C, YML028W, YML115C, YML116W, YML130C, YML131W, YMR037C, YMR038C, YMR144W, YMR231W, YNL025C, YNL087W, YNL134C, YNL231C, YNL238W, YNR018W, YNR061C, YOL034W, YOL115W, YOL117W, YOL118C, YOL119C, YOL123W, YOL124C, YOL151W, YOR018W, YOR043W, YOR044W, YOR074C, YOR075W, YOR128C, YOR162C, YOR163W, YOR180C, YOR181W, YOR236W, YOR273C, YOR274W, YOR315W, YOR335C, YOR336W, YPL044C, YPL111W, YPL216W, YPL217C, YPR002C-A, YPR065W	YOR225W, YDR135C, YOR226C, YPL016W, YMR105C, YNL111C, YML058W-A, YNL339C, YCR107W, YLR155C, YLR157C, YML028W, YGR296W, YMR173W, YMR023C, YNR066C, YLR099C, YJL026W, YOL150C, YLR160C, YPR065W, YGR294W, YJL101C, YKL096W, YLR108C, YNR076W, YKL120W, YLR109W, YMR173W-A, YGR019W, YDR353W, YHR219W, YDR481C, YJR162C, YOL119C, YOL151W, YDR297W, YER039C, YER067W, YER044C, YJR104C, YGL255W, YMR034C, YMR038C, YOL067C, YBR244W, YHR135C, YBR085W, YHR046C, YKL008C, YKL010C, YLR178C, YFL068W, YNL134C, YOR306C, YGR209C	None	"A | 0.032 0.009 0.001 0.001 0.001 0.933 0.003 0.152 0.994 0.981 0.131 
C | 0.288 0.057 0.900 0.001 0.001 0.003 0.949 0.001 0.001 0.006 0.001 
G | 0.053 0.590 0.037 0.001 0.454 0.055 0.039 0.007 0.004 0.004 0.262 
T | 0.627 0.344 0.062 0.997 0.544 0.009 0.009 0.840 0.001 0.009 0.606 
"
YAP3	YHL009C	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	TTACTAA	0.006202532	4.79	5.59155	6.44	"Basic leucine zipper (bZIP) transcription factor
"	YAR009C, YAR035W, YBL001C, YBR040W, YBR041W, YBR057C, YBR102C, YBR103W, YBR143C, YBR232C, YCR042C, YCR096C, YDL092W, YDL094C, YDL127W, YDL161W, YDL163W, YDL164C, YDR160W, YDR319C, YDR461W, YEL002C, YER013W, YGL047W, YGL048C, YGL108C, YGL178W, YGL205W, YGL206C, YGL249W, YHL008C, YHR155W, YHR178W, YIL116W, YIL117C, YJR044C, YJR154W, YKL009W, YKL010C, YKR035C, YKR073C, YLL035W, YLL036C, YLL038C, YLR006C, YLR007W, YLR035C-A, YLR207W, YLR292C, YLR346C, YLR425W, YLR452C, YLR463C, YLR465C, YLR467W, YML055W, YML056C, YML082W, YML083C, YML116W, YMR135W-A, YMR193W, YMR283C, YNL025C, YNL048W, YNL049C, YNL145W, YNR011C, YNR012W, YOL042W, YOL043C, YOL142W, YOL143C, YOR033C, YOR074C, YOR075W, YOR093C, YOR094W, YOR129C, YOR148C, YPL257W-A, YPL257W-B, YPR048W, YPR183W	YCR040W, YGL199C, YGR280C, YIL084C, YKR012C, YGL009C, YPL019C, YCR013C, YCR041W, YKR013W, YML113W, YMR044W, YOR194C, YOR226C, YCR097W-A, YHR143W-A, YPR079W, YPR140W, YCR073W-A, YFR005C, YGR005C, YHR025W, YLR340W, YOR351C, YPL187W, YHR208W, YML085C, YBR067C, YDR461W, YFR006W, YHR021C, YHR026W, YLR339C, YNL146W, YPR015C, YCL012W, YCL018W, YDR281C, YIL015W, YML055W, YMR253C, YNL300W, YNR071C, YOR229W, YDR077W, YER154W, YNL057W, YJR148W, YAL012W, YER001W, YLR440C, YDR502C, YMR113W, YOL144W, YPR026W, YPL195W, YBR265W, YKL209C, YKL178C, YLR343W, YLR349W, YOL111C, YOL143C, YNR043W, YCL027W, YJL158C, YKL177W, YNL308C, YCR059C, YKR093W, YOR239W, YOR243C, YLR040C, YLR416C, YLR420W, YDL058W, YCL066W, YKR086W, YOR210W, YLR454W, YKL120W, YLR041W, YML010W, YCR097W, YFL026W, YKL032C, YOL126C, YGL089C, YBR145W, YDL014W, YFL023W, YJR004C, YKL216W, YNR044W, YNL322C, YGL226W, YLR303W, YOR247W, YPL043W, YGL224C, YHL009C, YLR267W, YLR302C, YOR246C, YOR248W, YGL032C, YPL044C, YOR034C, YCL009C, YGR274C, YMR094W, YER073W, YOR152C	None	"A | 0.089 0.015 0.630 0.011 0.011 0.801 0.692 
C | 0.069 0.166 0.215 0.914 0.238 0.045 0.150 
G | 0.132 0.030 0.086 0.063 0.073 0.036 0.059 
T | 0.710 0.789 0.069 0.012 0.678 0.118 0.099 
"
YAP5	YIR018W	Morozov et. al.	http://www.ncbi.nlm.nih.gov/pubmed/17438293	CTAGGCTAAGC	8.26815e-13	9.15	12.6946	11.81	"Basic leucine zipper (bZIP) transcription factor
"	YBL107C, YBL108W, YBL109W, YBL111C, YBL112C, YBL113C, YBR057C, YBR190W, YBR191W, YCL045C, YCL065W, YCL066W, YCL067C, YCL068C, YCL074W, YCR028C, YCR039C, YCR040W, YCR041W, YCR105W, YCR107W, YDL082W, YDL083C, YDL114W, YDL115C, YDL155W, YDL191W, YDL223C, YDL224C, YDR252W, YDR366C, YDR368W, YDR370C, YDR371W, YDR449C, YDR450W, YDR470C, YDR471W, YDR543C, YDR544C, YDR545W, YEL054C, YEL074W, YEL075C, YEL076C, YEL076C-A, YER056C-A, YER074W, YER116C, YER117W, YER189W, YER190W, YFL062W, YFL063W, YFL064C, YFL065C, YGL030W, YGL031C, YGL093W, YGL094C, YGL103W, YGL104C, YGL115W, YGL189C, YGR117C, YGR118W, YGR148C, YGR149W, YGR175C, YGR176W, YGR254W, YGR295C, YGR296W, YHL048W, YHL049C, YHR021C, YHR021W-A, YHR036W, YHR063C, YHR087W, YHR091C, YHR141C, YHR142W, YHR203C, YHR204W, YIL018W, YIL128W, YIL129C, YIL133C, YIL148W, YIL149C, YIL173W, YIL174W, YIL175W, YIL177C, YJL042W, YJL134W, YJL135W, YJL136C, YJL188C, YJL189W, YJL190C, YJL225C, YJR044C, YJR070C, YJR161C, YKL049C, YKL079W, YLL063C, YLL065W, YLL066C, YLL067C, YLR047C, YLR048W, YLR185W, YLR207W, YLR447C, YLR448W, YLR462W, YLR463C, YLR464W, YLR465C, YLR466W, YLR467W, YML024W, YML025C, YML026C, YML063W, YML064C, YML073C, YML111W, YML124C, YML132W, YML133C, YMR015C, YMR135W-A, YMR142C, YMR143W, YMR165C, YNL069C, YNL236W, YNL302C, YNL336W, YNL337W, YNL338W, YNL339C, YNR029C, YNR030W, YOL120C, YOR234C, YOR292C, YOR293W, YOR318C, YOR319W, YPL079W, YPL080C, YPL090C, YPL200W, YPL201C, YPL283C, YPR061C, YPR062W, YPR080W, YPR131C, YPR132W, YPR202W, YPR203W	YMR192W, YPL240C, YHR145C, YPL016W, YPL283C, YNL339C, YDR157W, YDR528W, YGR064W, YDR281C, YER057C, YML058W, YOR043W, YGR161W-B, YJL124C, YBR245C, YLR312W-A, YDL202W, YLR345W, YPR053C, YLR264W, YEL026W, YMR242C, YER072W, YHR219W, YIR018W, YMR037C, YNL046W, YBR185C, YHR136C, YLR424W, YCR031C, YER138W-A, YIL133C, YMR034C, YOL040C, YPL075W, YDR156W, YIR022W, YBL051C, YFL068W, YPR071W	None	"A | 0.024 0.034 0.366 0.002 0.382 0.004 0.007 0.699 0.945 0.025 0.010 
C | 0.544 0.185 0.264 0.010 0.148 0.974 0.036 0.266 0.020 0.167 0.969 
G | 0.407 0.248 0.007 0.544 0.465 0.015 0.044 0.018 0.006 0.784 0.013 
T | 0.025 0.533 0.364 0.444 0.005 0.007 0.913 0.017 0.029 0.024 0.008 
"
YAP6	YDR259C, HAL7	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	TTACGTAAAC	9.744327e-14	6.04	8.66249	9.9	"Putative basic leucine zipper (bZIP) transcription factor; overexpression increases sodium and lithium tolerance; computational analysis suggests a role in regulation of expression of genes involved in carbohydrate metabolism
"	YAL064W, YBL029W, YBL030C, YBR157C, YBR158W, YDL037C, YDL245C, YDL246C, YDR042C, YDR077W, YDR259C, YDR441C, YDR442W, YDR524C, YDR525W, YEL006W, YEL007W, YEL040W, YEL044W, YEL045C, YEL046C, YEL047C, YEL055C, YEL069C, YEL070W, YER001W, YER007C-A, YER028C, YER045C, YER073W, YER158C, YFL004W, YFL034C-B, YGL005C, YGL135W, YGL136C, YGL158W, YGR035C, YGR060W, YGR108W, YGR190C, YGR192C, YGR221C, YGR234W, YGR238C, YGR249W, YHL034C, YHL041W, YHR047C, YHR049W, YIL012W, YIL013C, YIL015C-A, YIL056W, YIL099W, YIL118W, YIL119C, YIL122W, YIL170W, YIL171W, YIL172C, YIR013C, YIR014W, YIR017C, YIR018W, YIR019C, YIR020C, YIR021W, YIR022W, YIR023W, YIR034C, YIR035C, YIR038C, YJL048C, YJL105W, YJL148W, YJL191W, YJL192C, YJL216C, YJL217W, YJL219W, YJL221C, YJR094C, YJR094W-A, YJR100C, YJR145C, YJR146W, YJR147W, YJR158W, YJR159W, YKL044W, YKL109W, YKL110C, YKR039W, YKR102W, YLL052C, YLL053C, YLR028C, YLR074C, YLR075W, YLR081W, YLR105C, YLR121C, YLR294C, YLR295C, YLR296W, YLR304C, YLR354C, YLR367W, YLR368W, YLR413W, YML116W, YML131W, YMR014W, YMR017W, YMR082C, YMR125W, YMR135C, YMR136W, YMR319C, YMR320W, YNL066W, YNL087W, YNL145W, YNL178W, YNL179C, YNL180C, YNL337W, YNL338W, YNL339C, YNR050C, YNR067C, YOL121C, YOL151W, YOL154W, YOL155C, YOL156W, YOL157C, YOL158C, YOR028C, YOR029W, YOR032C, YOR042W, YOR049C, YOR153W, YOR167C, YOR168W, YOR170W, YOR178C, YOR179C, YOR180C, YOR181W, YOR223W, YOR236W, YOR272W, YOR277C, YOR278W, YOR315W, YOR369C, YOR381W, YPL143W, YPL198W, YPR013C, YPR065W, YPR148C, YPR149W, YPR192W	YMR192W, YBL097W, YFL013W-A, YGL075C, YKL139W, YBR093C, YDR281C, YHR127W, YOR043W, YJR148W, YFL051C, YOR141C, YDL233W, YER159C, YBR144C, YPL130W, YGR016W, YGL191W, YKR101W, YDR061W, YMR034C, YDR485C	None	"A | 0.102 0.009 0.889 0.005 0.424 0.035 0.885 0.734 0.323 0.151 
C | 0.067 0.020 0.036 0.834 0.031 0.075 0.068 0.052 0.217 0.657 
G | 0.086 0.017 0.038 0.020 0.536 0.055 0.022 0.044 0.224 0.074 
T | 0.745 0.956 0.037 0.143 0.009 0.834 0.026 0.171 0.236 0.118 
"
YAP7	YOL028C	Aligned Matrix	http://ural.wustl.edu/TFDB/about/	GCTTACTAAT	1.7012655e-77	7.87	10.9934	10.78	"Putative basic leucine zipper (bZIP) transcription factor
"	YBR272C, YDR468C, YDR469W, YER172C, YER173W, YHL009C, YHR001W-A, YJL029C, YLR067C, YLR068W, YLR321C, YMR073C, YMR131C, YMR316C-B, YOL069W, YOL070C, YOL071W, YOR121C	YCR012W, YCR040W, YDR432W, YGR282C, YIL148W, YKR012C, YMR046W-A, YOL047C, YOR225W, YFR032C-A, YGL009C, YHR174W, YLR056W, YNL211C, YBR031W, YCR013C, YDR034C-A, YDR063W, YER117W, YGR279C, YIL082W, YKR042W, YKR013W, YNL080C, YOR226C, YAL069W, YDL061C, YJL052W, YJL118W, YOR066W, YPL048W, YOR380W, YOR382W, YDR160W, YFR007W, YHR025W, YIL174W, YIL176C, YIR034C, YJR116W, YJR147W, YLL028W, YLR340W, YLR372W, YLR374C, YMR071C, YNL147W, YNL149C, YOR347C, YOR351C, YPL187W, YAR068W, YBR283C, YGL103W, YGR180C, YHR208W, YHR210C, YNL335W, YNL337W, YPL142C, YBR091C, YBR067C, YDR461W, YGR034W, YJR146W, YJR117W, YLR339C, YNL146W, YPR013C, YNL251C, YBL026W, YCL018W, YBR256C, YDL191W, YDR281C, YGL102C, YGR185C, YIL015W, YML026C, YML086C, YPL145C, YPL147W, YDR378C, YJR094W-A, YLR287C-A, YNL089C, YNL030W, YAL013W, YDL133C-A, YDL136W, YHR123W, YHR188C, YJL121C, YMR230W, YNL279W, YOR045W, YBR009C, YDR077W, YER154W, YGR285C, YHL021C, YIL153W, YNL027W, YNL057W, YOR234C, YAL012W, YBR196C, YKL081W, YOR390W, YER097W, YDR539W, YGR037C, YLR344W, YLR348C, YOL144W, YOL086C, YOR293W, YBL062W, YBL003C, YKL147C, YKL178C, YDR471W, YJL025W, YLL010C, YLR343W, YLR379W, YMR079W, YMR081C, YNL150W, YOL143C, YPL279C, YOR221C, YIL027C, YJL158C, YKL177W, YMR323W, YHR010W, YKR057W, YKR093W, YMR057C, YOL029C, YIL114C, YHR190W, YKL060C, YLR040C, YLR420W, YNL285W, YOR081C, YOR085W, YOR393W, YCL066W, YDR447C, YHR005C-A, YML126C, YOL028C, YOL030W, YOR210W, YHR189W, YKL120W, YLR041W, YLR043C, YFL026W, YHR072W-A, YLR388W, YMR147W, YOL126C, YDR322C-A, YER043C, YGL089C, YGR234W, YBR145W, YFR018C, YLL018C, YNL190W, YNL162W, YOL155C, YPL281C, YJR004C, YKL216W, YKL156W, YLR167W, YNR044W, YNL322C, YDR454C, YGL191W, YHL004W, YLR303W, YMR006C, YOR247W, YAL033W, YER019C-A, YGL031C, YHR136C, YHR141C, YJL141C, YPL076W, YBR053C, YCR028C-A, YIL169C, YLR300W, YLR302C, YNL070W, YNL074C, YNL045W, YOR248W, YDL121C, YGL032C, YGR118W, YJL136C, YLR421C, YMR215W, YFL037W, YJR135W-A, YLR332W, YLR334C, YMR158C-B, YOR369C, YOR375C, YDL184C, YKL164C, YLR180W, YLR390W-A, YOL127W, YBL018C, YER048W-A, YGR209C, YOR182C	INO2	"A | 0.064 0.403 0.017 0.008 0.972 0.014 0.021 0.802 0.964 0.088 
C | 0.062 0.564 0.010 0.020 0.008 0.767 0.016 0.180 0.008 0.021 
G | 0.661 0.017 0.012 0.229 0.014 0.105 0.009 0.011 0.012 0.229 
T | 0.213 0.017 0.962 0.743 0.008 0.113 0.954 0.007 0.017 0.661 
"
YDR026C		Pachkov et al	http://www.ncbi.nlm.nih.gov/pubmed/17130146	TTTACCCGGC	2.917984e-23	11.39	17.1571	13.52		No Data	YNL051W, YPL240C, YPL016W, YNL143C, YJL209W, YDR281C, YJR148W, YKR023W, YDR102C, YLR345W, YNL039W, YBR296C, YNR001C, YOL002C, YOL119C, YOL095C, YOR027W, YCR031C, YGL255W, YMR034C, YPL075W, YPR044C, YOL101C	CBF1, GIS1, MBP1, MSN2, RGM1, RPN4, SWI6, USV1	"A | 0.091 0.001 0.001 0.997 0.001 0.001 0.064 0.001 0.027 0.384 
C | 0.001 0.001 0.055 0.001 0.997 0.997 0.934 0.001 0.001 0.415 
G | 0.144 0.022 0.001 0.001 0.001 0.001 0.001 0.997 0.971 0.058 
T | 0.764 0.976 0.943 0.001 0.001 0.001 0.001 0.001 0.001 0.143 
"
YER130C		Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	CCCCTAT	0.001015208	6.51	10.8161	9.19		YAR009C, YBL018C, YBL025W, YBR065C, YBR097W, YBR099C, YBR109C, YBR110W, YBR298C, YBR299W, YCL002C, YCL006C, YCL007C, YCL008C, YCL009C, YCL010C, YCL055W, YCL056C, YCR002C, YCR004C, YCR005C, YCR006C, YCR008W, YCR012W, YCR028C, YCR032W, YDL034W, YDL036C, YDL091C, YDL092W, YDL094C, YDL179W, YDL240W, YDR030C, YDR031W, YDR056C, YDR057W, YDR061W, YDR066C, YDR080W, YDR125C, YDR126W, YDR135C, YDR137W, YDR183W, YDR253C, YDR254W, YDR279W, YDR282C, YDR286C, YDR287W, YDR292C, YDR314C, YDR324C, YDR325W, YDR372C, YDR373W, YDR404C, YDR405W, YEL002C, YEL015W, YEL016C, YER044C, YER066C-A, YER068W, YER133W, YER138C, YER181C, YFR007W, YFR041C, YFR042W, YGL059W, YGL060W, YGL061C, YGL113W, YGL116W, YGL133W, YGL183C, YGR004W, YGR059W, YGR076C, YGR126W, YGR184C, YGR188C, YGR289C, YHL023C, YHL044W, YHR044C, YHR045W, YHR062C, YHR171W, YIL014W, YIL048W, YIL089W, YIL139C, YJL023C, YJL148W, YJL193W, YJL195C, YJR012C, YJR013W, YJR088C, YJR089W, YJR098C, YJR099W, YJR100C, YJR108W, YJR109C, YJR110W, YJR142W, YKL061W, YKL072W, YKL077W, YKR015C, YKR016W, YKR026C, YKR036C, YKR051W, YLL014W, YLR018C, YLR019W, YLR055C, YLR056W, YLR097C, YLR105C, YLR199C, YLR200W, YLR265C, YLR287C, YLR330W, YLR365W, YLR366W, YLR395C, YLR446W, YLR452C, YMR125W, YMR283C, YNL012W, YNL013C, YNL101W, YNL129W, YNL130C, YNL146W, YNL258C, YNL259C, YNL284C, YNL286W, YNR054C, YOL042W, YOL043C, YOL049W, YOL050C, YOR059C, YOR093C, YOR094W, YOR115C, YOR209C, YOR210W, YOR241W, YOR263C, YOR265W, YOR280C, YOR282W, YOR365C, YOR367W, YOR368W, YOR387C, YPL147W, YPL148C, YPL208W, YPL209C, YPL213W, YPL214C, YPR107C, YPR108W, YPR122W, YPR139C, YPR140W	YBR006W, YPL014W, YGR033C, YMR103C, YMR105C, YDR280W, YER053C, YGR248W, YGR250C, YBR093C, YJL017W, YMR104C, YER029C, YCR021C, YDR074W, YBR163W, YBR169C, YGL053W, YKL051W, YOR043W, YER150W, YMR023C, YML100W, YKL050C, YFR015C, YFR017C, YMR084W, YMR145C, YDL234C, YER038C, YGR008C, YIR035C, YLR375W, YOR324C, YOR354C, YMR321C, YPL087W, YIL068C, YOR273C, YDL214C, YGR138C, YER158C, YLR258W, YGR139W, YDR481C, YHR068W, YNL160W, YER067W, YBR054W, YLR297W, YGL067W, YHR136C, YDR055W, YMR034C, YMR181C, YMR250W, YCR099C, YLL026W, YCL040W, YCL042W, YKR003W, YNR019W	MIG3, RSF2, SUT1, TEC1	"A | 0.010 0.010 0.010 0.010 0.010 0.590 0.210 
C | 0.960 0.890 0.970 0.970 0.010 0.010 0.010 
G | 0.010 0.010 0.010 0.010 0.010 0.080 0.040 
T | 0.020 0.090 0.010 0.010 0.970 0.320 0.740 
"
YER184C		Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	TCCGGA	0.5394168	4.34	9.48236	8.03		YAL047C, YAR050W, YBL077W, YBL078C, YBR120C, YBR280C, YBR281C, YBR282W, YDR090C, YDR136C, YDR138W, YDR294C, YDR430C, YDR432W, YDR433W, YER142C, YER143W, YGR167W, YIL035C, YIR024C, YIR025W, YKR072C, YLR140W, YLR141W, YLR273C, YLR274W, YNL120C, YNL187W, YNL210W, YNL211C, YNL222W, YNL230C, YOL149W, YOL150C, YOR198C, YOR199W, YOR200W	YAL034W-A, YDR207C, YOL048C, YEL011W, YGR125W, YPL014W, YPL016W, YDR342C, YMR103C, YMR105C, YPL283C, YGR248W, YGR250C, YPL112C, YJL017W, YMR104C, YNL116W, YBL024W, YDR309C, YGR211W, YLR183C, YCR021C, YDR074W, YOR267C, YBR169C, YDL072C, YKL051W, YOR043W, YDR011W, YER150W, YER154W, YML120C, YMR023C, YJR148W, YKL219W, YML100W, YBR166C, YFR015C, YFR017C, YMR084W, YDL234C, YER038C, YCR083W, YGR008C, YIR035C, YPL087W, YGR138C, YLR258W, YAR027W, YGR139W, YKL120W, YLR444C, YJL038C, YOR361C, YNL160W, YER067W, YBR054W, YLR297W, YDL124W, YDR055W, YMR001C, YMR034C, YHR135C, YLR452C, YMR181C, YMR250W, YLL026W, YCL040W, YCL042W, YLR178C, YFL068W, YHR045W, YLR327C	CST6, DAL82, GIS1, MIG3, MSN4, PDR3, PDR8, PHD1, RGM1, RPH1, RSC3, STP1, SUT1, SUT2, USV1	"A | 0.020 0.010 0.010 0.010 0.010 0.680 
C | 0.170 0.760 0.970 0.010 0.010 0.300 
G | 0.100 0.150 0.010 0.970 0.970 0.010 
T | 0.710 0.080 0.010 0.010 0.010 0.010 
"
YGR067C		Zhao and Stormo	http://www.ncbi.nlm.nih.gov/pubmed/21654662	GTGGGG	0.0004672496	4.68	7.27304	8.15		YBR276C, YBR278W, YDR026C, YGR042W, YGR182C, YHL047C, YHR118C, YHR119W, YJL014W, YJL016W, YJR030C, YJR140C, YJR141W, YKL047W, YKL048C, YKL197C, YLR125W, YLR293C, YLR319C, YLR320W, YMR004W, YOL136C, YOL137W, YOL138C, YPL001W, YPL002C, YPR019W	YGL205W, YHR146W, YJL115W, YKL043W, YLR404W, YBR005W, YGL166W, YOL016C, YOR220W, YBR126C, YHR053C, YOR317W, YMR314W, YMR316C-A, YMR316W, YNL305C, YBR093C, YFR004W, YDL219W, YDR281C, YKL142W, YKL206C, YIL124W, YOR385W, YOR230W, YFR041C, YLR099C, YOR357C, YLR194C, YNR035C, YBR071W, YBR101C, YFL016C, YOR298C-A, YNL310C, YNL312W, YKR024C, YNL065W, YAR028W, YDR210W, YGR136W, YNL289W, YNL098C, YAR027W, YDR209C, YEL060C, YER014W, YGR137W, YOR052C, YPL004C, YJL038C, YKL001C, YOR367W, YHR219W, YBR056W, YOR027W, YMR068W, YBR244W, YKL065C, YLR079W, YDL023C, YCL040W, YDL022W, YGR026W, YOL101C, YNL007C	None	"A | 0.091 0.227 0.057 0.089 0.120 0.152 
C | 0.055 0.339 0.049 0.051 0.023 0.051 
G | 0.784 0.055 0.858 0.859 0.829 0.733 
T | 0.070 0.378 0.036 0.001 0.028 0.064 
"
YHP1	YDR451C	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	TAATTG	0.06082567	7.18	9.0887	7.18	"One of two homeobox transcriptional repressors (see also Yox1p), that bind to Mcm1p and to early cell cycle box (ECB) elements of cell cycle regulated genes, thereby restricting ECB-mediated transcription to the M/G1 interval
"	YAR009C, YAR018C, YBR174C, YBR176W, YBR248C, YBR292C, YCR028C, YDL017W, YDL018C, YDL064W, YDL065C, YDL092W, YDL094C, YDL146W, YDR028C, YDR029W, YDR080W, YDR117C, YDR118W, YDR127W, YDR136C, YDR138W, YDR190C, YDR191W, YDR210W-D, YDR273W, YDR279W, YEL032W, YER013W, YER133W, YER135C, YER138C, YFR023W, YGL137W, YGL138C, YGL159W, YGR004W, YGR056W, YGR092W, YGR150C, YHR001W, YHR028C, YHR062C, YIL048W, YIL075C, YJL037W, YJL038C, YJL145W, YJR010C-A, YKL161C, YKL177W, YKL179C, YLL016W, YLR011W, YLR020C, YLR021W, YLR085C, YLR086W, YLR222C, YLR275W, YLR311C, YLR312C, YLR312W-A, YLR330W, YMR106C, YMR197C, YMR198W, YMR257C, YMR270C, YMR283C, YNL131W, YNL187W, YNL210W, YNL211C, YNR006W, YNR067C, YOL115W, YOR004W, YOR059C, YOR102W, YOR148C, YOR188W, YOR214C, YOR297C, YOR298W, YOR353C, YPL159C, YPL208W, YPL209C, YPR047W, YPR092W, YPR118W	YBR006W, YDR222W, YPL015C, YOR381W, YDR034C-A, YDR365W-B, YDR399W, YML113W, YPL014W, YPL016W, YLR374C, YMR103C, YGR250C, YLR120C, YNL303W, YNL305C, YJL017W, YMR104C, YDR340W, YLR121C, YCR021C, YDR074W, YOR267C, YPL247C, YKL051W, YLR251W, YML120C, YMR023C, YOR384W, YPR150W, YFR017C, YMR084W, YMR145C, YGR008C, YIR035C, YLR375W, YOL083W, YER064C, YNR034W, YPL087W, YOR273C, YGR138C, YLR414C, YOR019W, YNL033W, YGR139W, YOL158C, YNL160W, YBR054W, YLR297W, YEL067C, YLR428C, YDR055W, YMR034C, YBR214W, YMR181C, YMR250W, YOR092W, YGR057C, YCL040W, YHR110W, YNR019W	None	"A | 0.012 0.964 0.964 0.012 0.012 0.012 
C | 0.012 0.012 0.012 0.012 0.012 0.012 
G | 0.012 0.012 0.012 0.012 0.012 0.964 
T | 0.964 0.012 0.012 0.964 0.964 0.012 
"
YKL222C		Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	AACGGAAATAA	0.3338341	7.52	11.3767	10.86		YBR258C, YBR259W, YCR082W, YDL038C, YDL039C, YDL089W, YDL090C, YDL137W, YGL155W, YGR182C, YHL002W, YHL003C, YHR104W, YIL124W, YJR093C, YJR133W, YJR140C, YJR141W, YKL201C, YKL221W, YKL222C, YLL028W, YLR293C, YLR319C, YLR320W, YMR268C, YMR269W, YNL025C, YNL212W, YNL213C, YNL249C, YOL137W, YOL138C, YOR249C, YPL180W, YPL182C	YLR467W, YBL079W, YPL016W, YOL075C, YPL272C, YCL014W, YER029C, YGR296W, YBR201W, YCR087W, YDL011C, YGR041W, YOL002C, YGL029W, YDL077C, YKL093W, YHR219W, YKL222C, YMR034C, YDR153C, YFL068W, YLR177W	None	"A | 0.480 0.525 0.010 0.010 0.010 0.830 0.490 0.760 0.110 0.590 0.600 
C | 0.250 0.178 0.970 0.010 0.010 0.010 0.050 0.030 0.020 0.080 0.110 
G | 0.230 0.287 0.010 0.970 0.970 0.150 0.430 0.020 0.010 0.040 0.170 
T | 0.040 0.010 0.010 0.010 0.010 0.010 0.030 0.190 0.860 0.290 0.120 
"
YLL054C		Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	TCCGTAAAAAAAAACGGA		10.89	12.8335	14.53		No Data	No Data	None	"A | 0.020 0.030 0.010 0.020 0.202 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.010 0.020 0.040 0.750 
C | 0.120 0.910 0.810 0.040 0.253 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.930 0.160 0.020 0.110 
G | 0.110 0.020 0.160 0.930 0.192 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.040 0.810 0.910 0.120 
T | 0.750 0.040 0.020 0.010 0.354 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.250 0.020 0.010 0.030 0.020 
"
YLR278C		Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	CGGAGTT	0.004544991	5.06	10.3557	9.08		YAR007C, YAR008W, YAR050W, YBL016W, YBL017C, YBL050W, YBL051C, YBL074C, YBL101W-B, YBR060C, YBR062C, YBR064W, YBR121C, YBR154C, YBR155W, YBR232C, YBR236C, YBR237W, YCR026C, YCR027C, YCR099C, YCR100C, YDL017W, YDL018C, YDL038C, YDL039C, YDL045W-A, YDL073W, YDL074C, YDL077C, YDL137W, YDL156W, YDL157C, YDL158C, YDL195W, YDR027C, YDR089W, YDR090C, YDR177W, YDR310C, YDR311W, YDR440W, YDR494W, YEL012W, YER060W, YER183C, YGL095C, YGL144C, YGR215W, YGR220C, YGR268C, YGR270W, YGR283C, YHL002W, YHL003C, YHL047C, YHR005C-A, YHR022C, YHR023W, YHR067W, YHR118C, YHR119W, YHR120W, YIL075C, YJR067C, YJR068W, YJR135C, YJR139C, YLR273C, YLR274W, YLR457C, YLR459W, YMR041C, YMR119W, YMR119W-A, YMR188C, YMR189W, YMR268C, YMR269W, YMR308C, YNL010W, YNL011C, YNL048W, YNL049C, YNL181W, YNL182C, YNL187W, YNL191W, YNL212W, YNL213C, YNL290W, YNL291C, YNR063W, YOL063C, YOL137W, YOL138C, YOL151W, YOR103C, YOR104W, YOR105W, YOR174W, YOR215C, YPL005W, YPL052W, YPL053C, YPL076W, YPL077C, YPR001W, YPR019W, YPR021C, YPR110C, YPR111W	YLR278C, YNL079C, YPL239W, YKL122C, YMR016C, YDR220C, YDR222W, YHR146W, YHR148W, YJL115W, YKL043W, YMR220W, YOR033C, YOR004W, YDR397C, YML113W, YFR033C, YKL110C, YLR026C, YOR038C, YPL014W, YJR112W, YLR374C, YMR103C, YMR105C, YOR287C, YOR347C, YGR250C, YLR120C, YLR156W, YML027W, YOR135C, YPL112C, YBR093C, YJL017W, YMR070W, YMR104C, YMR136W, YNL180C, YBL058W, YER029C, YGL106W, YJL148W, YLR121C, YLR183C, YNR029C, YPL109C, YCR021C, YDR074W, YOR261C, YOR263C, YOR267C, YPL247C, YBR169C, YHR127W, YKL113C, YLR033W, YLR438C-A, YOR073W, YOR075W, YPL055C, YCR047C, YER150W, YHL021C, YKR080W, YML120C, YNL090W, YNR066C, YOR264W, YOR202W, YML100W, YBR164C, YDL135C, YFR041C, YHR149C, YJL122W, YJL124C, YLR095C, YLR101C, YOR074C, YOR078W, YOR384W, YDL041W, YLR314C, YMR145C, YNL155W, YOR357C, YPR060C, YGL111W, YGR220C, YKL149C, YLR192C, YML093W, YML064C, YNL309W, YPL118W, YDR505C, YGR012W, YIR035C, YIR010W, YMR081C, YMR144W, YNL124W, YOL149W, YOR294W, YPR025C, YBL028C, YBR264C, YDL201W, YER031C, YER064C, YGR187C, YGR251W, YGR253C, YJL184W, YNL308C, YNR001C, YNL310C, YPL087W, YER127W, YNL099C, YOR273C, YAR028W, YAL025C, YGL055W, YGR138C, YHR196W, YLR074C, YLR414C, YMR236W, YNL289W, YPL068C, YDR019C, YER158C, YKR025W, YLR258W, YLR262C, YPL255W, YAR018C, YDR209C, YGR135W, YGR139W, YGR167W, YLR073C, YMR235C, YMR239C, YNL290W, YDL048C, YGR079W, YOL122C, YOR367W, YDR481C, YGR078C, YLR321C, YLR387C, YNL160W, YOL119C, YOL151W, YOL093W, YOL123W, YCL031C, YPL129W, YBR054W, YIL138C, YLR297W, YNL107W, YOL041C, YHR200W, YJL079C, YOR025W, YOR091W, YDR055W, YDR087C, YGL255W, YLR300W, YMR001C, YMR034C, YMR005W, YMR038C, YNL104C, YOL038W, YPL202C, YBR214W, YEL037C, YGL068W, YGR173W, YHR169W, YKL134C, YLR079W, YLR049C, YLR051C, YMR181C, YMR250W, YNL232W, YOR026W, YOR092W, YDL023C, YDR152W, YCL040W, YIL011W, YML080W, YPL166W, YDL022W, YDR121W, YNL166C, YBR278W, YDR299W, YNR019W	None	"A | 0.010 0.010 0.010 0.940 0.040 0.230 0.270 
C | 0.970 0.010 0.010 0.010 0.140 0.020 0.050 
G | 0.010 0.970 0.970 0.040 0.810 0.050 0.050 
T | 0.010 0.010 0.010 0.010 0.010 0.700 0.630 
"
YML081W		Zhao and Stormo	http://www.ncbi.nlm.nih.gov/pubmed/21654662	CCCCGC	0.001047257	4.38	8.22023	8.46		YCR018C-A, YCR019W, YCR024C-A, YDR040C, YDR041W, YDR042C, YDR194C, YDR195W, YDR278C, YDR472W, YEL007W, YEL033W, YEL034W, YEL035C, YER002W, YER007C-A, YGL001C, YGR060W, YHL009C, YHR144C, YIL015C-A, YJL148W, YJL191W, YJL192C, YJL200C, YKL096W-A, YKL097C, YKR040C, YKR042W, YLL004W, YLL005C, YLR011W, YLR046C, YLR112W, YLR334C, YLR367W, YMR014W, YMR186W, YMR193W, YNL030W, YNL031C, YNL066W, YNR050C, YOR153W, YOR192C-A, YOR192C-B, YOR236W, YPL062W	YER145C, YAL005C, YLR056W, YNL241C, YPL017C, YOR381W, YHL047C, YMR042W, YMR015C, YGL038C, YGL012W, YGR151C, YOR066W, YPL016W, YPL018W, YOR382W, YHR053C, YHR055C, YPL272C, YER028C, YLR154C, YML027W, YHR183W, YBR093C, YBR067C, YBR129C, YGR060W, YIL175W, YMR136W, YNL180C, YOL109W, YOR316C, YDR281C, YER029C, YIL015W, YMR316C-B, YOR132W, YDR044W, YNL058C, YOR203W, YAR015W, YKL051W, YLR100W, YMR023C, YNL057W, YNR068C, YMR199W, YOR010C, YJR151C, YOL150C, YGR256W, YHR215W, YMR142C, YOL143C, YAR071W, YMR317W, YGL062W, YOR237W, YBR207W, YFR054C, YLR420W, YNL289W, YOR051C, YIL131C, YNL037C, YAR018C, YDR209C, YHR163W, YPL061W, YMR120C, YOL122C, YOR367W, YOR383C, YLR136C, YBR083W, YDR174W, YDR481C, YMR146C, YDL241W, YDR297W, YER044C, YNR044W, YMR006C, YDR270W, YEL065W, YGR146C, YGR176W, YCR005C, YMR034C, YBR244W, YGL032C, YGR177C, YLR047C, YLR049C, YNL264C, YML081W, YLR359W, YOR306C, YOR338W, YDR305C, YMR307W	None	"A | 0.194 0.034 0.001 0.064 0.286 0.075 
C | 0.718 0.825 0.956 0.899 0.019 0.801 
G | 0.019 0.001 0.001 0.001 0.397 0.037 
T | 0.069 0.140 0.042 0.036 0.297 0.087 
"
YNR063W		Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	TCGGAGAT	0.07170702	6.74	11.2833	10.03		YAR007C, YAR008W, YBL050W, YBL051C, YBL074C, YBR060C, YBR062C, YBR064W, YBR120C, YBR154C, YBR155W, YBR254C, YBR255W, YBR292C, YCR017C, YCR054C, YCR099C, YCR100C, YDL001W, YDL002C, YDL156W, YDL157C, YDL158C, YDR089W, YDR091C, YDR092W, YDR318W, YDR355C, YDR440W, YDR461W, YER183C, YGL137W, YGL138C, YGR015C, YGR016W, YGR084C, YGR215W, YGR221C, YGR222W, YHL002W, YHL003C, YHR022C, YHR023W, YHR110W, YHR118C, YHR119W, YHR120W, YIR024C, YIR025W, YIR030C, YJL012C, YJL014W, YJL016W, YKL143W, YKL144C, YKL201C, YLR065C, YLR066W, YLR087C, YLR088W, YLR242C, YLR243W, YLR309C, YMR177W, YMR209C, YMR210W, YMR287C, YMR288W, YNL212W, YNL213C, YNL290W, YNL291C, YNR063W, YNR068C, YOL137W, YOL138C, YOR275C, YOR276W, YOR343C-A, YOR343C-B, YPL005W, YPL243W, YPL244C, YPL257W-A, YPL257W-B, YPL267W, YPR001W, YPR082C, YPR083W, YPR110C, YPR111W	YNR063W, YKR070W, YPL016W, YOR131C, YFR006W, YMR238W, YLR131C, YOR043W, YGR013W, YBR259W, YDL170W, YOL119C, YGL092W, YJL194W, YLR297W, YAR047C, YOR034C	None	"A | 0.079 0.010 0.010 0.010 0.970 0.100 0.880 0.320 
C | 0.079 0.970 0.010 0.010 0.010 0.010 0.010 0.030 
G | 0.178 0.010 0.970 0.970 0.010 0.790 0.010 0.030 
T | 0.663 0.010 0.010 0.010 0.010 0.100 0.100 0.620 
"
YOX1	YML027W	Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	TTAATTAA	0.001884855	4.97	8.26789	7.48	"Homeodomain-containing transcriptional repressor, binds to Mcm1p and to early cell cycle boxes (ECBs) in the promoters of cell cycle-regulated genes expressed in M/G1 phase; expression is cell cycle-regulated; potential Cdc28p substrate
"	YAR018C, YBR089W, YBR099C, YBR202W, YCL054W, YCR018C-A, YCR019W, YCR024C-A, YCR096C, YDL068W, YDL071C, YDR003W, YDR034C-A, YDR040C, YDR041W, YDR042C, YDR077W, YDR084C, YDR098C-A, YDR098C-B, YDR144C, YDR145W, YDR190C, YDR191W, YDR210W-D, YDR278C, YDR434W, YDR495C, YDR496C, YEL032W, YER002W, YER013W, YER033C, YER034W, YER044C-A, YER071C, YER072W, YER135C, YFR002W, YGL001C, YGL004C, YGR071C, YGR072W, YGR092W, YGR218W, YGR273C, YHR011W, YHR043C, YHR085W, YHR098C, YHR099W, YHR151C, YHR152W, YHR182W, YIL014W, YIL119C, YIR005W, YJL030W, YJL031C, YJL139C, YJL175W, YJL191W, YJL192C, YJL194W, YJL196C, YJL203W, YJL204C, YJR011C, YJR051W, YJR094C, YKR004C, YKR040C, YKR042W, YKR056W, YLR011W, YLR023C, YLR047C, YLR048W, YLR254C, YLR261C, YLR262C, YLR273C, YLR274W, YLR428C, YLR430W, YMR019W, YMR098C, YMR193W, YMR194W, YMR258C, YNL001W, YNL002C, YNL038W, YNL050C, YNL070W, YNL145W, YNL146W, YNL258C, YOL003C, YOL115W, YOL159C, YOL160W, YOR058C, YOR066W, YOR148C, YPL051W, YPL106C, YPL188W, YPL216W, YPL217C, YPR104C	YLR274W, YLR463C, YLR465C, YLR467W, YPL015C, YBR220C, YLR462W, YLR464W, YPL014W, YDL037C, YJR112W, YLL066C, YLR374C, YMR103C, YML027W, YNL303W, YMR104C, YPR019W, YBL026W, YBR250W, YLR121C, YCR021C, YKL051W, YOR043W, YHL049C, YLR281C, YMR017W, YMR023C, YNR066C, YOR228C, YOR384W, YKL022C, YHR215W, YIR035C, YLL067C, YAR071W, YJL188C, YDR026C, YKR061W, YKR093W, YML133C, YGR138C, YLR414C, YDR019C, YNL037C, YGR108W, YGR139W, YNL127W, YCL038C, YJL225C, YJL196C, YNR044W, YPL163C, YBR054W, YBL111C, YLR297W, YLR428C, YCR005C, YDR055W, YLR269C, YMR034C, YMR181C, YGR057C, YLR398C, YPR040W, YFL064C, YNR019W	None	"A | 0.010 0.010 0.970 0.970 0.010 0.010 0.610 0.550 
C | 0.250 0.010 0.010 0.010 0.010 0.010 0.030 0.130 
G | 0.070 0.010 0.010 0.010 0.010 0.010 0.150 0.130 
T | 0.670 0.970 0.010 0.010 0.970 0.970 0.210 0.190 
"
YPR013C		Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	AACGTAAATCA		8.39	12.9383	11.2		No Data	No Data	None	"A | 0.550 0.440 0.010 0.010 0.010 0.960 0.710 0.970 0.010 0.010 0.640 
C | 0.080 0.210 0.525 0.010 0.020 0.020 0.010 0.010 0.010 0.970 0.300 
G | 0.240 0.230 0.010 0.970 0.010 0.010 0.270 0.010 0.010 0.010 0.020 
T | 0.130 0.120 0.455 0.010 0.960 0.010 0.010 0.010 0.970 0.010 0.040 
"
YPR015C		Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	TGAAGACGTAAATCCT		11.36	14.7805	15.13		No Data	No Data	None	"A | 0.080 0.160 0.384 0.376 0.273 0.550 0.020 0.010 0.010 0.970 0.870 0.970 0.010 0.010 0.327 0.090 
C | 0.240 0.200 0.172 0.238 0.051 0.170 0.743 0.010 0.020 0.010 0.010 0.010 0.010 0.970 0.574 0.220 
G | 0.140 0.340 0.172 0.139 0.465 0.240 0.020 0.970 0.010 0.010 0.110 0.010 0.010 0.010 0.059 0.080 
T | 0.540 0.300 0.273 0.248 0.212 0.040 0.218 0.010 0.960 0.010 0.010 0.010 0.970 0.010 0.040 0.610 
"
YPR022C		Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	CCCCAC	0.362031	5.11	11.1213	9.1		YAR007C, YAR008W, YAR050W, YBL050W, YBL051C, YBL074C, YBR062C, YBR064W, YCR054C, YCR082W, YDL001W, YDL002C, YDL137W, YDL156W, YDL157C, YDL158C, YDR310C, YDR311W, YDR355C, YGL205W, YGL206C, YGR015C, YGR016W, YGR053C, YGR054W, YGR084C, YGR215W, YGR222W, YHL002W, YHL003C, YHR005C-A, YHR022C, YHR023W, YHR067W, YIL084C, YJL014W, YJL016W, YJR030C, YKL143W, YKL144C, YKL201C, YLL040C, YLR065C, YLR066W, YLR242C, YLR243W, YLR309C, YLR345W, YLR440C, YML129C, YMR066W, YMR119W, YMR119W-A, YMR154C, YMR155W, YMR188C, YMR189W, YMR268C, YMR269W, YMR287C, YMR288W, YNL021W, YNL022C, YNL025C, YNL145W, YOR343C-A, YOR343C-B, YPL005W, YPL196W, YPL197C, YPL198W, YPR001W, YPR082C, YPR083W, YPR110C, YPR111W	YBR004C, YOR381W, YBL083C, YDR433W, YPL014W, YPR138C, YLR374C, YMR103C, YGR250C, YJL017W, YMR104C, YLR121C, YCR021C, YOR267C, YKL051W, YPL055C, YPL029W, YMR023C, YOR384W, YMR145C, YOR297C, YPR022C, YBR261C, YBR293W, YBR295W, YCL028W, YDR286C, YIR035C, YLR375W, YJL188C, YPL087W, YDR386W, YKR057W, YKR030W, YNL065W, YGR138C, YLR414C, YGR139W, YCL038C, YKL031W, YNL160W, YOL155C, YBR054W, YLR297W, YDR055W, YMR034C, YLR047C, YMR181C, YMR250W, YBR281C, YDR304C	None	"A | 0.149 0.010 0.010 0.010 0.970 0.010 
C | 0.644 0.970 0.970 0.970 0.010 0.970 
G | 0.010 0.010 0.010 0.010 0.010 0.010 
T | 0.198 0.010 0.010 0.010 0.010 0.010 
"
YPR196W		Badis et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19111667	ATTTCTCCG	0.05160491	4.82	9.05423	9.47		YAR019C, YBL095W, YCR018C-A, YCR019W, YDR543C, YER189W, YER190W, YGL258W, YHR073W, YHR091C, YJL134W, YJL135W, YJL136C, YLR463C, YLR465C, YLR467W, YNL337W, YNL338W, YNL339C, YOL160W	YDR370C, YOL015W, YOL047C, YDR222W, YHR146W, YJL115W, YDL127W, YPL014W, YMR103C, YGR250C, YBR129C, YJL017W, YMR104C, YMR136W, YER029C, YLR183C, YCR021C, YDR074W, YOR267C, YKL051W, YLR438C-A, YMR199W, YOR074C, YOR384W, YFR017C, YMR145C, YNL309W, YIR035C, YMR144W, YNL120C, YOL149W, YPL275W, YBR264C, YER064C, YNL310C, YOR273C, YGR138C, YHR160C, YNL289W, YGR139W, YDL048C, YGR079W, YLR384C, YOR305W, YOR367W, YNL160W, YBR054W, YLR297W, YHR200W, YDR055W, YMR034C, YMR181C, YMR250W, YDL025C, YDL056W, YDR488C, YGR023W, YGR051C, YHR079C-A, YJR141W, YNL169C, YOL101C, YNR019W	CIN5, GSM1, IME1, MIG3, OAF1, PDR8, RGT1, UME6	"A | 0.600 0.310 0.170 0.240 0.170 0.120 0.010 0.010 0.030 
C | 0.010 0.010 0.010 0.040 0.440 0.320 0.910 0.970 0.010 
G | 0.260 0.010 0.010 0.020 0.110 0.070 0.070 0.010 0.910 
T | 0.130 0.670 0.810 0.700 0.280 0.490 0.010 0.010 0.050 
"
YRM1	YOR172W	Zhu et. al.	http://www.ncbi.nlm.nih.gov/pubmed/19158363	CACTCGCGGAAATAAGACGGT		13.41	10.7223	17.88	"Zn2-Cys6 zinc-finger transcription factor that activates genes involved in multidrug resistance; paralog of Yrr1p, acting on an overlapping set of target genes
"	No Data	No Data	CAT8, MIG3, PDR1, SKN7	"A | 0.089 0.485 0.150 0.280 0.270 0.380 0.061 0.080 0.030 0.690 0.606 0.790 0.220 0.620 0.580 0.240 0.320 0.222 0.188 0.070 0.307 
C | 0.525 0.089 0.330 0.250 0.440 0.150 0.768 0.030 0.020 0.050 0.030 0.050 0.030 0.020 0.170 0.210 0.120 0.475 0.248 0.100 0.139 
G | 0.287 0.218 0.190 0.180 0.150 0.440 0.101 0.840 0.889 0.200 0.152 0.050 0.050 0.120 0.130 0.390 0.300 0.162 0.436 0.590 0.069 
T | 0.099 0.208 0.330 0.290 0.140 0.030 0.071 0.050 0.061 0.060 0.212 0.110 0.700 0.240 0.120 0.160 0.260 0.141 0.129 0.240 0.485 
"
YRR1	YOR162C, PDR2	Macisaac et. al	http://www.ncbi.nlm.nih.gov/pubmed/16522208	TTTTGTTACCCG	4.898371e-07	13.12	16.4462	14.39	"Zn2-Cys6 zinc-finger transcription factor that activates genes involved in multidrug resistance; paralog of Yrm1p, acting on an overlapping set of target genes
"	YAL062W, YAR007C, YAR008W, YBL068W, YBL070C, YBL089W, YBL108W, YBR076W, YBR109C, YBR110W, YBR167C, YBR168W, YBR185C, YBR186W, YBR204C, YBR205W, YBR206W, YCL002C, YCL006C, YCL007C, YCL008C, YCL009C, YCL010C, YCR002C, YCR004C, YCR005C, YCR006C, YCR008W, YCR012W, YCR030C, YCR096C, YDL091C, YDL092W, YDL094C, YDL104C, YDL114W, YDL115C, YDR020C, YDR021W, YDR030C, YDR031W, YDR061W, YDR066C, YDR080W, YDR098C-A, YDR098C-B, YDR102C, YDR103W, YDR136C, YDR138W, YDR279W, YDR286C, YDR287W, YDR292C, YDR318W, YDR322W, YDR473C, YER013W, YER133W, YER134C, YER138C, YFL066C, YFL067W, YFR007W, YFR056C, YGL178W, YGL192W, YGL194C, YGR091W, YGR093W, YGR184C, YGR188C, YGR287C, YGR288W, YHL012W, YHL013C, YHL050C, YHR041C, YHR042W, YHR044C, YHR045W, YHR123W, YHR171W, YIL043C, YIL048W, YIL075C, YJL023C, YJR010C-A, YJR088C, YJR089W, YJR098C, YJR099W, YJR100C, YJR154W, YKR003W, YKR094C, YKR095W, YLL014W, YLR055C, YLR056W, YLR083C, YLR097C, YLR103C, YLR104W, YLR265C, YLR269C, YLR271W, YLR360W, YLR373C, YLR375W, YLR412W, YLR428C, YLR430W, YML072C, YML112W, YMR060C, YMR061W, YMR071C, YMR072W, YMR099C, YMR100W, YMR126C, YMR187C, YMR204C, YNL048W, YNL049C, YNL083W, YNL084C, YNL126W, YNL272C, YNL323W, YNL325C, YNR011C, YNR012W, YNR054C, YOL099C, YOL144W, YOL145C, YOR090C, YOR091W, YOR115C, YOR188W, YOR353C, YOR368W, YOR386W, YPL070W, YPL071C, YPL073C, YPL159C, YPR007C, YPR068C, YPR087W, YPR092W, YPR107C, YPR108W, YPR118W, YPR198W	YDR068W, YKR012C, YHR146W, YJL115W, YDL127W, YMR189W, YPL014W, YML027W, YBR129C, YFR006W, YGR286C, YAR007C, YMR199W, YOR074C, YMR145C, YNR016C, YIL054W, YNL309W, YNR035C, YBR135W, YNL310C, YIR015W, YNL065W, YOL002C, YGL055W, YLR108C, YLR046C, YNL289W, YGR139W, YNL290W, YDR482C, YLL013C, YLL044W, YLR326W, YLR358C, YLR390W, YNL195C, YOR304C-A, YOR367W, YBL037W, YCL002C, YCL038C, YDR357C, YJL167W, YNR047W, YBR054W, YLR297W, YOR027W, YMR034C, YBR244W, YMR181C, YOL101C, YPL165C	None	"A | 0.001 0.211 0.263 0.001 0.053 0.053 0.001 0.945 0.001 0.001 0.001 0.315 
C | 0.001 0.105 0.053 0.158 0.053 0.001 0.105 0.001 0.945 0.736 0.997 0.001 
G | 0.053 0.001 0.001 0.001 0.893 0.001 0.001 0.001 0.001 0.262 0.001 0.631 
T | 0.945 0.683 0.683 0.840 0.001 0.945 0.893 0.053 0.053 0.001 0.001 0.053 
"
ZAP1	YJL056C, ZRG10	Harbison et. al.	http://www.ncbi.nlm.nih.gov/pubmed/15343339	ACCCTAAAGGTTAT	7.48592e-14	14.96	22.6011	17.5	"Zinc-regulated transcription factor; binds to zinc-responsive promoters to induce transcription of certain genes in presence of zinc, represses other genes in low zinc; regulates its own transcription; contains seven zinc-finger domains
"	YAL001C, YBL109W, YBL111C, YBL112C, YBL113C, YBR048W, YBR254C, YBR255W, YCL065W, YCL066W, YCL067C, YCL068C, YCL074W, YCR039C, YCR040W, YCR041W, YCR105W, YDL044C, YDR042C, YDR064W, YDR065W, YDR066C, YDR098C, YDR526C, YDR543C, YEL012W, YER065C, YFL062W, YGL022W, YGL023C, YGL134W, YGL255W, YGR024C, YGR084C, YGR222W, YGR296W, YHR091C, YHR145C, YHR193C, YHR194W, YIL070C, YIL133C, YJL015C, YJL055W, YJL056C, YJL188C, YJL191W, YJL192C, YKL072W, YKL175W, YKL176C, YLR061W, YLR073C, YLR130C, YLR131C, YLR368W, YML065W, YML066C, YML132W, YML133C, YNL253W, YNL254C, YNL337W, YOL026C, YOL121C, YOL166C, YPL283C, YPR202W, YPR203W	YHL012W, YPL207W, YMR040W, YPL240C, YKL073W, YKL104C, YPL016W, YKR103W, YGR032W, YMR315W, YGL181W, YML006C, YNL281W, YIL117C, YJR025C, YJR148W, YDR195W, YLR348C, YLR130C, YPL088W, YFL014W, YLR349W, YOL143C, YOR298C-A, YBR296C, YKR061W, YKR093W, YOL031C, YGL055W, YHR134W, YPR096C, YLR231C, YML130C, YNL064C, YOR080W, YPL061W, YJR130C, YKL001C, YOL156W, YLR355C, YNL160W, YOL119C, YHR018C, YIL170W, YJR104C, YDL124W, YJL079C, YLR453C, YMR184W, YOR027W, YGL255W, YIL101C, YMR062C, YMR034C, YNL104C, YLR049C, YLR423C, YNL234W, YAL029C, YFR030W	None	"A | 0.997 0.001 0.001 0.001 0.001 0.400 0.997 0.997 0.001 0.001 0.001 0.065 0.400 0.001 
C | 0.001 0.997 0.997 0.798 0.001 0.400 0.001 0.001 0.001 0.001 0.001 0.235 0.200 0.001 
G | 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.997 0.997 0.001 0.035 0.400 0.001 
T | 0.001 0.001 0.001 0.200 0.997 0.200 0.001 0.001 0.001 0.001 0.997 0.665 0.001 0.997 
"